Ggra4510.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4510.t1
Unique Name	Ggra4510.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	745

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:723243..725477 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	592015.HMPREF1705_01175
Preferred name	pnp
PFAMs	KH_1,PNPase,RNase_PH,RNase_PH_C,S1
Max annot lvl	508458\|Synergistetes
KEGG rclass	RC02795
KEGG ko	ko:K00962
KEGG Reaction	R00437,R00438,R00439,R00440
KEGG Pathway	ko00230,ko00240,ko03018,map00230,map00240,map03018
KEGG Module	M00394
Evalue	4.3e-88
EggNOG OGs	COG1185@1\|root,COG1185@2\|Bacteria,3T9RU@508458\|Synergistetes
EC	2.7.7.8
Description	Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4510	Ggra4510	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 723243..725477 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4510.t1.stop1	Ggra4510.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 723243..723245 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4510.t1.CDS1	Ggra4510.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 723243..725477 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4510.t1.exon1	Ggra4510.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 723243..725477 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4510.t1.start1	Ggra4510.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 725475..725477 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4510.t1	Ggra4510.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 723243..725477 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:723243..725477-
coding sequence from alignment at tig00000898_pilon:723243..725477-

mRNA sequence

>Ggra4510.t1 ID=Ggra4510.t1|Name=Ggra4510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=745bp
MWGRTTASRALSASVQLSSSHSPLSSKLTLSTNRLARLAPSSTVLSCGDA
TILATATPHSYLAIDFRSKAAAVGVIPLTWSRKEQQPALRETITARLIDR
SLRPATPAAHICVNVFGTRRASDPPLDALAVNAASAATAGLSNWSGPIAA
ARVSYVDGRFVPFASESISSQAQLSTFVAINERQRVLCVSIQAANAPDSL
VIDAVAEAIEAAVPIVQLQKDYHQMLLDLREREGLSSFPRRNPQQQQKSD
PLPVPDESVTDQIQKHAFEVYDEAFVKCRDHPGKAHRAHILTTAQEQILH
SFESYSPSHVSHITDAAAREAFRSRILNDRIRLDGRAPSQIRPLRAEAPV
LPGDVHGSALFERGDTQVLAHATIGLIARAAKVEEYIDGADQRPFFFHYA
FPSYATGEPGGPSSFSSRREIGHGALAEDAIAPVLDSCPYALRVSAEVLA
SDGSSSMAAVCAGSMALRDAGAPITQDVAGVAMGLVTNGDEEVILTDILG
VEDHYGDMDMKVAGTRDGITACQLDTKHPEGLSQQTLSKALHQSRDAHEY
ILDHMQGQQTQGMPKHAPRVAEVPVEGNGTRTLLRDRAAILKDIEERTDS
KLWYDPRKQVVFVEAPNEEAAQRACELISEAAGDLELGVKVDATVMEVRQ
SYALVQTDSGVQGVLHVSKMMVNPVIGGERFPDARRVLTKGDRLEVVVVE
ADQQRGTLRFGLTKRPERAIQLENGINDVLAAIATSGDPQEGKA*

spliced messenger RNA

>Ggra4510.t1 ID=Ggra4510.t1|Name=Ggra4510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2235bp|location=Sequence derived from alignment at tig00000898_pilon:723243..725477- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGGTCGCACTACTGCGTCGCGCGCTTTAAGCGCATCGGTGCAACT
CTCTTCCTCCCACTCGCCTCTTTCGTCTAAACTCACTCTCTCCACGAATC
GTCTGGCACGTCTTGCTCCCTCATCGACCGTCCTCAGTTGCGGTGATGCT
ACTATCCTCGCCACCGCTACTCCACACTCCTACCTGGCCATCGACTTCCG
CTCCAAAGCTGCCGCTGTTGGAGTGATTCCCCTTACATGGAGTCGCAAAG
AGCAACAACCGGCACTTCGGGAAACGATTACAGCTCGACTGATTGATCGC
TCATTGCGTCCTGCGACGCCTGCTGCACATATCTGCGTGAACGTTTTTGG
CACTCGACGAGCTTCAGATCCGCCCTTAGATGCGCTTGCTGTCAATGCTG
CTTCTGCAGCTACGGCAGGCCTATCAAACTGGAGTGGGCCTATTGCAGCT
GCGCGTGTTTCGTACGTGGATGGTCGATTTGTTCCGTTTGCATCTGAGTC
TATTTCATCACAAGCACAGCTGTCTACCTTTGTTGCCATAAACGAGAGAC
AGCGCGTGCTCTGCGTTTCGATTCAGGCTGCAAATGCGCCGGATTCTCTT
GTTATTGATGCGGTAGCAGAGGCCATAGAAGCGGCGGTTCCCATAGTTCA
GCTGCAAAAGGATTATCATCAAATGTTGTTAGATCTGCGAGAGCGAGAAG
GTTTATCTTCTTTTCCCAGAAGAAACCCACAGCAACAACAGAAGTCCGAT
CCCCTTCCCGTTCCGGACGAATCAGTCACGGACCAAATCCAAAAGCATGC
ATTTGAAGTATATGACGAGGCCTTCGTTAAGTGCAGAGATCATCCGGGAA
AGGCACACCGAGCACATATCTTGACAACTGCCCAGGAGCAAATACTCCAT
AGTTTCGAATCATACAGCCCCTCTCATGTTTCCCATATCACAGACGCAGC
CGCACGCGAAGCATTTCGTTCTAGGATACTCAATGACCGCATTCGGCTTG
ATGGACGTGCACCTTCTCAAATTCGTCCATTGAGAGCAGAAGCTCCTGTA
CTGCCGGGTGACGTTCATGGCTCGGCCTTGTTTGAGCGAGGGGATACCCA
AGTGCTCGCTCATGCAACTATCGGGCTCATCGCTCGGGCAGCAAAAGTTG
AAGAGTACATTGACGGAGCCGACCAACGACCCTTTTTCTTTCACTATGCA
TTTCCTTCCTACGCAACCGGAGAGCCTGGTGGTCCGTCTTCGTTTTCGAG
CAGGCGAGAAATCGGCCACGGAGCGCTTGCAGAGGATGCGATTGCTCCTG
TCTTGGATTCTTGTCCGTATGCACTCCGAGTATCTGCGGAGGTGTTAGCA
TCCGATGGGAGTAGTTCTATGGCAGCAGTTTGTGCTGGTTCTATGGCACT
ACGCGACGCTGGAGCTCCTATCACTCAAGATGTGGCTGGCGTTGCAATGG
GTTTGGTAACAAATGGTGATGAGGAAGTCATTCTTACTGACATACTGGGC
GTAGAGGATCACTATGGGGACATGGATATGAAGGTGGCAGGCACAAGGGA
TGGTATCACTGCCTGCCAGCTGGATACCAAGCACCCAGAGGGTCTTTCTC
AACAAACTCTAAGCAAGGCACTACATCAGTCAAGAGACGCACATGAGTAT
ATTTTGGACCATATGCAGGGACAGCAAACCCAAGGTATGCCCAAGCATGC
GCCAAGAGTGGCCGAAGTACCTGTTGAGGGAAATGGTACGCGAACCTTGC
TCAGGGATCGGGCAGCAATTTTGAAAGATATAGAGGAACGGACGGACTCT
AAACTTTGGTACGACCCGCGGAAGCAAGTGGTTTTTGTTGAGGCTCCGAA
CGAAGAGGCTGCGCAACGGGCTTGCGAACTCATCTCTGAAGCTGCGGGTG
ATTTAGAGCTTGGCGTAAAGGTTGATGCTACTGTGATGGAAGTTCGACAA
TCTTACGCCTTGGTTCAGACCGATAGTGGTGTTCAAGGAGTTCTGCATGT
TTCGAAAATGATGGTGAACCCTGTCATCGGAGGAGAACGGTTTCCGGACG
CACGAAGAGTCCTCACAAAAGGCGATAGGTTGGAAGTCGTCGTTGTCGAA
GCAGATCAACAGCGCGGAACCCTTCGATTTGGACTGACAAAGCGACCAGA
GCGTGCTATCCAGTTGGAGAATGGAATAAATGATGTTCTGGCAGCGATTG
CAACCTCTGGCGATCCTCAAGAAGGCAAGGCCTGA

protein sequence of Ggra4510.t1

>Ggra4510.t1 ID=Ggra4510.t1|Name=Ggra4510.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=745bp
MWGRTTASRALSASVQLSSSHSPLSSKLTLSTNRLARLAPSSTVLSCGDA
TILATATPHSYLAIDFRSKAAAVGVIPLTWSRKEQQPALRETITARLIDR
SLRPATPAAHICVNVFGTRRASDPPLDALAVNAASAATAGLSNWSGPIAA
ARVSYVDGRFVPFASESISSQAQLSTFVAINERQRVLCVSIQAANAPDSL
VIDAVAEAIEAAVPIVQLQKDYHQMLLDLREREGLSSFPRRNPQQQQKSD
PLPVPDESVTDQIQKHAFEVYDEAFVKCRDHPGKAHRAHILTTAQEQILH
SFESYSPSHVSHITDAAAREAFRSRILNDRIRLDGRAPSQIRPLRAEAPV
LPGDVHGSALFERGDTQVLAHATIGLIARAAKVEEYIDGADQRPFFFHYA
FPSYATGEPGGPSSFSSRREIGHGALAEDAIAPVLDSCPYALRVSAEVLA
SDGSSSMAAVCAGSMALRDAGAPITQDVAGVAMGLVTNGDEEVILTDILG
VEDHYGDMDMKVAGTRDGITACQLDTKHPEGLSQQTLSKALHQSRDAHEY
ILDHMQGQQTQGMPKHAPRVAEVPVEGNGTRTLLRDRAAILKDIEERTDS
KLWYDPRKQVVFVEAPNEEAAQRACELISEAAGDLELGVKVDATVMEVRQ
SYALVQTDSGVQGVLHVSKMMVNPVIGGERFPDARRVLTKGDRLEVVVVE
ADQQRGTLRFGLTKRPERAIQLENGINDVLAAIATSGDPQEGKA*

mRNA from alignment at tig00000898_pilon:723243..725477-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4510.t1 ID=Ggra4510.t1|Name=Ggra4510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2235bp|location=Sequence derived from alignment at tig00000898_pilon:723243..725477- (Gracilaria gracilis GNS1m male)
ATGTGGGGTCGCACTACTGCGTCGCGCGCTTTAAGCGCATCGGTGCAACT
CTCTTCCTCCCACTCGCCTCTTTCGTCTAAACTCACTCTCTCCACGAATC
GTCTGGCACGTCTTGCTCCCTCATCGACCGTCCTCAGTTGCGGTGATGCT
ACTATCCTCGCCACCGCTACTCCACACTCCTACCTGGCCATCGACTTCCG
CTCCAAAGCTGCCGCTGTTGGAGTGATTCCCCTTACATGGAGTCGCAAAG
AGCAACAACCGGCACTTCGGGAAACGATTACAGCTCGACTGATTGATCGC
TCATTGCGTCCTGCGACGCCTGCTGCACATATCTGCGTGAACGTTTTTGG
CACTCGACGAGCTTCAGATCCGCCCTTAGATGCGCTTGCTGTCAATGCTG
CTTCTGCAGCTACGGCAGGCCTATCAAACTGGAGTGGGCCTATTGCAGCT
GCGCGTGTTTCGTACGTGGATGGTCGATTTGTTCCGTTTGCATCTGAGTC
TATTTCATCACAAGCACAGCTGTCTACCTTTGTTGCCATAAACGAGAGAC
AGCGCGTGCTCTGCGTTTCGATTCAGGCTGCAAATGCGCCGGATTCTCTT
GTTATTGATGCGGTAGCAGAGGCCATAGAAGCGGCGGTTCCCATAGTTCA
GCTGCAAAAGGATTATCATCAAATGTTGTTAGATCTGCGAGAGCGAGAAG
GTTTATCTTCTTTTCCCAGAAGAAACCCACAGCAACAACAGAAGTCCGAT
CCCCTTCCCGTTCCGGACGAATCAGTCACGGACCAAATCCAAAAGCATGC
ATTTGAAGTATATGACGAGGCCTTCGTTAAGTGCAGAGATCATCCGGGAA
AGGCACACCGAGCACATATCTTGACAACTGCCCAGGAGCAAATACTCCAT
AGTTTCGAATCATACAGCCCCTCTCATGTTTCCCATATCACAGACGCAGC
CGCACGCGAAGCATTTCGTTCTAGGATACTCAATGACCGCATTCGGCTTG
ATGGACGTGCACCTTCTCAAATTCGTCCATTGAGAGCAGAAGCTCCTGTA
CTGCCGGGTGACGTTCATGGCTCGGCCTTGTTTGAGCGAGGGGATACCCA
AGTGCTCGCTCATGCAACTATCGGGCTCATCGCTCGGGCAGCAAAAGTTG
AAGAGTACATTGACGGAGCCGACCAACGACCCTTTTTCTTTCACTATGCA
TTTCCTTCCTACGCAACCGGAGAGCCTGGTGGTCCGTCTTCGTTTTCGAG
CAGGCGAGAAATCGGCCACGGAGCGCTTGCAGAGGATGCGATTGCTCCTG
TCTTGGATTCTTGTCCGTATGCACTCCGAGTATCTGCGGAGGTGTTAGCA
TCCGATGGGAGTAGTTCTATGGCAGCAGTTTGTGCTGGTTCTATGGCACT
ACGCGACGCTGGAGCTCCTATCACTCAAGATGTGGCTGGCGTTGCAATGG
GTTTGGTAACAAATGGTGATGAGGAAGTCATTCTTACTGACATACTGGGC
GTAGAGGATCACTATGGGGACATGGATATGAAGGTGGCAGGCACAAGGGA
TGGTATCACTGCCTGCCAGCTGGATACCAAGCACCCAGAGGGTCTTTCTC
AACAAACTCTAAGCAAGGCACTACATCAGTCAAGAGACGCACATGAGTAT
ATTTTGGACCATATGCAGGGACAGCAAACCCAAGGTATGCCCAAGCATGC
GCCAAGAGTGGCCGAAGTACCTGTTGAGGGAAATGGTACGCGAACCTTGC
TCAGGGATCGGGCAGCAATTTTGAAAGATATAGAGGAACGGACGGACTCT
AAACTTTGGTACGACCCGCGGAAGCAAGTGGTTTTTGTTGAGGCTCCGAA
CGAAGAGGCTGCGCAACGGGCTTGCGAACTCATCTCTGAAGCTGCGGGTG
ATTTAGAGCTTGGCGTAAAGGTTGATGCTACTGTGATGGAAGTTCGACAA
TCTTACGCCTTGGTTCAGACCGATAGTGGTGTTCAAGGAGTTCTGCATGT
TTCGAAAATGATGGTGAACCCTGTCATCGGAGGAGAACGGTTTCCGGACG
CACGAAGAGTCCTCACAAAAGGCGATAGGTTGGAAGTCGTCGTTGTCGAA
GCAGATCAACAGCGCGGAACCCTTCGATTTGGACTGACAAAGCGACCAGA
GCGTGCTATCCAGTTGGAGAATGGAATAAATGATGTTCTGGCAGCGATTG
CAACCTCTGGCGATCCTCAAGAAGGCAAGGCCTGA

Coding sequence (CDS) from alignment at tig00000898_pilon:723243..725477-

>Ggra4510.t1 ID=Ggra4510.t1|Name=Ggra4510.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2235bp|location=Sequence derived from alignment at tig00000898_pilon:723243..725477- (Gracilaria gracilis GNS1m male)
ATGTGGGGTCGCACTACTGCGTCGCGCGCTTTAAGCGCATCGGTGCAACT
CTCTTCCTCCCACTCGCCTCTTTCGTCTAAACTCACTCTCTCCACGAATC
GTCTGGCACGTCTTGCTCCCTCATCGACCGTCCTCAGTTGCGGTGATGCT
ACTATCCTCGCCACCGCTACTCCACACTCCTACCTGGCCATCGACTTCCG
CTCCAAAGCTGCCGCTGTTGGAGTGATTCCCCTTACATGGAGTCGCAAAG
AGCAACAACCGGCACTTCGGGAAACGATTACAGCTCGACTGATTGATCGC
TCATTGCGTCCTGCGACGCCTGCTGCACATATCTGCGTGAACGTTTTTGG
CACTCGACGAGCTTCAGATCCGCCCTTAGATGCGCTTGCTGTCAATGCTG
CTTCTGCAGCTACGGCAGGCCTATCAAACTGGAGTGGGCCTATTGCAGCT
GCGCGTGTTTCGTACGTGGATGGTCGATTTGTTCCGTTTGCATCTGAGTC
TATTTCATCACAAGCACAGCTGTCTACCTTTGTTGCCATAAACGAGAGAC
AGCGCGTGCTCTGCGTTTCGATTCAGGCTGCAAATGCGCCGGATTCTCTT
GTTATTGATGCGGTAGCAGAGGCCATAGAAGCGGCGGTTCCCATAGTTCA
GCTGCAAAAGGATTATCATCAAATGTTGTTAGATCTGCGAGAGCGAGAAG
GTTTATCTTCTTTTCCCAGAAGAAACCCACAGCAACAACAGAAGTCCGAT
CCCCTTCCCGTTCCGGACGAATCAGTCACGGACCAAATCCAAAAGCATGC
ATTTGAAGTATATGACGAGGCCTTCGTTAAGTGCAGAGATCATCCGGGAA
AGGCACACCGAGCACATATCTTGACAACTGCCCAGGAGCAAATACTCCAT
AGTTTCGAATCATACAGCCCCTCTCATGTTTCCCATATCACAGACGCAGC
CGCACGCGAAGCATTTCGTTCTAGGATACTCAATGACCGCATTCGGCTTG
ATGGACGTGCACCTTCTCAAATTCGTCCATTGAGAGCAGAAGCTCCTGTA
CTGCCGGGTGACGTTCATGGCTCGGCCTTGTTTGAGCGAGGGGATACCCA
AGTGCTCGCTCATGCAACTATCGGGCTCATCGCTCGGGCAGCAAAAGTTG
AAGAGTACATTGACGGAGCCGACCAACGACCCTTTTTCTTTCACTATGCA
TTTCCTTCCTACGCAACCGGAGAGCCTGGTGGTCCGTCTTCGTTTTCGAG
CAGGCGAGAAATCGGCCACGGAGCGCTTGCAGAGGATGCGATTGCTCCTG
TCTTGGATTCTTGTCCGTATGCACTCCGAGTATCTGCGGAGGTGTTAGCA
TCCGATGGGAGTAGTTCTATGGCAGCAGTTTGTGCTGGTTCTATGGCACT
ACGCGACGCTGGAGCTCCTATCACTCAAGATGTGGCTGGCGTTGCAATGG
GTTTGGTAACAAATGGTGATGAGGAAGTCATTCTTACTGACATACTGGGC
GTAGAGGATCACTATGGGGACATGGATATGAAGGTGGCAGGCACAAGGGA
TGGTATCACTGCCTGCCAGCTGGATACCAAGCACCCAGAGGGTCTTTCTC
AACAAACTCTAAGCAAGGCACTACATCAGTCAAGAGACGCACATGAGTAT
ATTTTGGACCATATGCAGGGACAGCAAACCCAAGGTATGCCCAAGCATGC
GCCAAGAGTGGCCGAAGTACCTGTTGAGGGAAATGGTACGCGAACCTTGC
TCAGGGATCGGGCAGCAATTTTGAAAGATATAGAGGAACGGACGGACTCT
AAACTTTGGTACGACCCGCGGAAGCAAGTGGTTTTTGTTGAGGCTCCGAA
CGAAGAGGCTGCGCAACGGGCTTGCGAACTCATCTCTGAAGCTGCGGGTG
ATTTAGAGCTTGGCGTAAAGGTTGATGCTACTGTGATGGAAGTTCGACAA
TCTTACGCCTTGGTTCAGACCGATAGTGGTGTTCAAGGAGTTCTGCATGT
TTCGAAAATGATGGTGAACCCTGTCATCGGAGGAGAACGGTTTCCGGACG
CACGAAGAGTCCTCACAAAAGGCGATAGGTTGGAAGTCGTCGTTGTCGAA
GCAGATCAACAGCGCGGAACCCTTCGATTTGGACTGACAAAGCGACCAGA
GCGTGCTATCCAGTTGGAGAATGGAATAAATGATGTTCTGGCAGCGATTG
CAACCTCTGGCGATCCTCAAGAAGGCAAGGCCTGA