Ggra4506.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4506.t1
Unique Name	Ggra4506.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	562

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:713080..714765 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4506	Ggra4506	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 713080..714765 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4506.t1.start1	Ggra4506.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 713080..713082 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4506.t1.CDS1	Ggra4506.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 713080..714765 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4506.t1.exon1	Ggra4506.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 713080..714765 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4506.t1.stop1	Ggra4506.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 714763..714765 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4506.t1	Ggra4506.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 713080..714765 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:713080..714765+
coding sequence from alignment at tig00000898_pilon:713080..714765+

mRNA sequence

>Ggra4506.t1 ID=Ggra4506.t1|Name=Ggra4506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=562bp
MRRPKRDIGIGSRSDNRMHTLQVPTIEQEVPVLDESHRMPDRPRGLNTRT
RTASPVSPPHSSDPLGGMTHIVSDDVEFFDEAQEVNSAGSSLSGVFAPLR
RMTREFEPKSQPSSPNWPNVGFPRHRSEPHVAANQIADISSLLELANTPS
ALMDRARETRRHGTQEGVRDRAKEISKELEGCQSPSAAYSMLRSMMDFAF
GIVEFTALLERQQALDDYGAFRKMVEIQNSYLEHAGVQKLSCTILGSLRI
DESIGGLKLGMMQTVDTIVQCLREHGRVASICREGIRALTALSKMNDVRT
RVIPTCNAIGVTVGCMELHAGDEDVQKEGSKFFSHASLHSETNKSHIAMH
GGLRRALRAAREFPASRALHTHLCTTIRNITLGRPDVVAQAEVLESVEAL
MDTLKRHGQASTTAIHALAALHHLATSTESIRRILRYDSWEHIIIGTARR
HSSKPNVQALVMAVSGSLVDAGAEHTPERLVRAGAVKAALTAMHRFVNRR
AVLLTGSHLVKVLLLGCEEGMDDLHQCGGIERLLDLLYCTVVAPTSGEER
YSGYADSLDNS*

spliced messenger RNA

>Ggra4506.t1 ID=Ggra4506.t1|Name=Ggra4506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000898_pilon:713080..714765+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGTCCTAAGCGAGATATCGGTATCGGTAGTCGCTCTGACAACCG
TATGCACACTCTGCAGGTGCCGACGATTGAACAAGAAGTGCCCGTCTTAG
ATGAATCCCATCGCATGCCCGATAGGCCTCGTGGCCTGAACACACGCACT
AGAACCGCTTCGCCAGTTTCCCCACCTCACAGTTCTGACCCGCTAGGAGG
TATGACACATATTGTGAGCGATGACGTCGAGTTTTTTGACGAAGCCCAGG
AAGTCAACTCTGCCGGTTCTTCATTGTCCGGAGTTTTCGCTCCCTTGCGA
AGGATGACTCGAGAATTTGAGCCCAAGTCCCAGCCTTCATCTCCGAACTG
GCCTAATGTAGGATTTCCAAGACACAGAAGTGAGCCACATGTGGCCGCCA
ACCAAATCGCTGATATATCCTCACTTCTGGAACTGGCAAACACACCGTCT
GCGCTTATGGATCGAGCTCGCGAGACACGGCGACATGGTACGCAGGAAGG
AGTTCGTGATCGTGCGAAAGAGATCTCGAAAGAACTGGAAGGATGTCAGT
CGCCATCTGCTGCGTACTCTATGTTGAGGAGTATGATGGACTTCGCTTTT
GGTATTGTTGAATTCACAGCACTACTAGAACGACAACAAGCGCTTGATGA
TTACGGTGCGTTTCGAAAGATGGTAGAGATTCAGAACAGCTACCTAGAAC
ACGCAGGGGTGCAGAAGCTTTCATGTACGATTCTTGGGTCTTTGCGTATA
GATGAGAGCATAGGCGGCCTCAAGCTCGGTATGATGCAAACCGTGGACAC
AATAGTGCAATGCCTCAGGGAACACGGAAGAGTTGCTAGCATATGCCGGG
AAGGCATCCGTGCGCTAACGGCGCTATCCAAAATGAATGATGTGCGCACA
AGGGTTATTCCAACATGTAATGCAATTGGGGTCACGGTTGGTTGTATGGA
GCTCCACGCGGGTGATGAGGATGTGCAGAAGGAAGGCTCAAAGTTTTTTT
CACATGCATCACTTCATTCTGAGACAAACAAATCACACATTGCGATGCAT
GGTGGTCTTCGTCGCGCACTTCGGGCTGCCCGTGAATTCCCGGCGAGCCG
TGCTTTGCACACACATTTATGTACAACTATTAGAAACATTACTTTGGGTC
GACCTGACGTTGTGGCCCAGGCGGAGGTGCTTGAAAGCGTAGAAGCATTG
ATGGATACTTTGAAGCGACATGGTCAAGCGTCCACCACTGCGATACATGC
ATTGGCAGCTTTGCATCATCTGGCAACCTCTACTGAAAGCATCAGACGAA
TCCTTCGCTACGATTCATGGGAACATATCATTATTGGCACGGCAAGAAGG
CATAGCAGCAAACCAAATGTCCAAGCCCTAGTAATGGCGGTTTCTGGAAG
CCTAGTTGATGCTGGAGCGGAGCACACACCAGAGCGTTTGGTGCGAGCTG
GTGCTGTCAAAGCAGCTTTAACGGCGATGCATCGATTTGTTAACAGAAGA
GCAGTGTTACTTACTGGCTCTCATCTCGTTAAAGTCTTGTTGCTTGGGTG
TGAGGAAGGAATGGATGACCTTCACCAATGTGGGGGGATTGAGCGGTTGT
TGGATTTGCTGTATTGTACGGTAGTAGCACCTACCTCTGGAGAGGAACGG
TATAGTGGCTACGCGGATTCCTTAGACAATAGCTGA

protein sequence of Ggra4506.t1

>Ggra4506.t1 ID=Ggra4506.t1|Name=Ggra4506.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=562bp
MRRPKRDIGIGSRSDNRMHTLQVPTIEQEVPVLDESHRMPDRPRGLNTRT
RTASPVSPPHSSDPLGGMTHIVSDDVEFFDEAQEVNSAGSSLSGVFAPLR
RMTREFEPKSQPSSPNWPNVGFPRHRSEPHVAANQIADISSLLELANTPS
ALMDRARETRRHGTQEGVRDRAKEISKELEGCQSPSAAYSMLRSMMDFAF
GIVEFTALLERQQALDDYGAFRKMVEIQNSYLEHAGVQKLSCTILGSLRI
DESIGGLKLGMMQTVDTIVQCLREHGRVASICREGIRALTALSKMNDVRT
RVIPTCNAIGVTVGCMELHAGDEDVQKEGSKFFSHASLHSETNKSHIAMH
GGLRRALRAAREFPASRALHTHLCTTIRNITLGRPDVVAQAEVLESVEAL
MDTLKRHGQASTTAIHALAALHHLATSTESIRRILRYDSWEHIIIGTARR
HSSKPNVQALVMAVSGSLVDAGAEHTPERLVRAGAVKAALTAMHRFVNRR
AVLLTGSHLVKVLLLGCEEGMDDLHQCGGIERLLDLLYCTVVAPTSGEER
YSGYADSLDNS*

mRNA from alignment at tig00000898_pilon:713080..714765+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4506.t1 ID=Ggra4506.t1|Name=Ggra4506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000898_pilon:713080..714765+ (Gracilaria gracilis GNS1m male)
ATGAGGCGTCCTAAGCGAGATATCGGTATCGGTAGTCGCTCTGACAACCG
TATGCACACTCTGCAGGTGCCGACGATTGAACAAGAAGTGCCCGTCTTAG
ATGAATCCCATCGCATGCCCGATAGGCCTCGTGGCCTGAACACACGCACT
AGAACCGCTTCGCCAGTTTCCCCACCTCACAGTTCTGACCCGCTAGGAGG
TATGACACATATTGTGAGCGATGACGTCGAGTTTTTTGACGAAGCCCAGG
AAGTCAACTCTGCCGGTTCTTCATTGTCCGGAGTTTTCGCTCCCTTGCGA
AGGATGACTCGAGAATTTGAGCCCAAGTCCCAGCCTTCATCTCCGAACTG
GCCTAATGTAGGATTTCCAAGACACAGAAGTGAGCCACATGTGGCCGCCA
ACCAAATCGCTGATATATCCTCACTTCTGGAACTGGCAAACACACCGTCT
GCGCTTATGGATCGAGCTCGCGAGACACGGCGACATGGTACGCAGGAAGG
AGTTCGTGATCGTGCGAAAGAGATCTCGAAAGAACTGGAAGGATGTCAGT
CGCCATCTGCTGCGTACTCTATGTTGAGGAGTATGATGGACTTCGCTTTT
GGTATTGTTGAATTCACAGCACTACTAGAACGACAACAAGCGCTTGATGA
TTACGGTGCGTTTCGAAAGATGGTAGAGATTCAGAACAGCTACCTAGAAC
ACGCAGGGGTGCAGAAGCTTTCATGTACGATTCTTGGGTCTTTGCGTATA
GATGAGAGCATAGGCGGCCTCAAGCTCGGTATGATGCAAACCGTGGACAC
AATAGTGCAATGCCTCAGGGAACACGGAAGAGTTGCTAGCATATGCCGGG
AAGGCATCCGTGCGCTAACGGCGCTATCCAAAATGAATGATGTGCGCACA
AGGGTTATTCCAACATGTAATGCAATTGGGGTCACGGTTGGTTGTATGGA
GCTCCACGCGGGTGATGAGGATGTGCAGAAGGAAGGCTCAAAGTTTTTTT
CACATGCATCACTTCATTCTGAGACAAACAAATCACACATTGCGATGCAT
GGTGGTCTTCGTCGCGCACTTCGGGCTGCCCGTGAATTCCCGGCGAGCCG
TGCTTTGCACACACATTTATGTACAACTATTAGAAACATTACTTTGGGTC
GACCTGACGTTGTGGCCCAGGCGGAGGTGCTTGAAAGCGTAGAAGCATTG
ATGGATACTTTGAAGCGACATGGTCAAGCGTCCACCACTGCGATACATGC
ATTGGCAGCTTTGCATCATCTGGCAACCTCTACTGAAAGCATCAGACGAA
TCCTTCGCTACGATTCATGGGAACATATCATTATTGGCACGGCAAGAAGG
CATAGCAGCAAACCAAATGTCCAAGCCCTAGTAATGGCGGTTTCTGGAAG
CCTAGTTGATGCTGGAGCGGAGCACACACCAGAGCGTTTGGTGCGAGCTG
GTGCTGTCAAAGCAGCTTTAACGGCGATGCATCGATTTGTTAACAGAAGA
GCAGTGTTACTTACTGGCTCTCATCTCGTTAAAGTCTTGTTGCTTGGGTG
TGAGGAAGGAATGGATGACCTTCACCAATGTGGGGGGATTGAGCGGTTGT
TGGATTTGCTGTATTGTACGGTAGTAGCACCTACCTCTGGAGAGGAACGG
TATAGTGGCTACGCGGATTCCTTAGACAATAGCTGA

Coding sequence (CDS) from alignment at tig00000898_pilon:713080..714765+

>Ggra4506.t1 ID=Ggra4506.t1|Name=Ggra4506.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1686bp|location=Sequence derived from alignment at tig00000898_pilon:713080..714765+ (Gracilaria gracilis GNS1m male)
ATGAGGCGTCCTAAGCGAGATATCGGTATCGGTAGTCGCTCTGACAACCG
TATGCACACTCTGCAGGTGCCGACGATTGAACAAGAAGTGCCCGTCTTAG
ATGAATCCCATCGCATGCCCGATAGGCCTCGTGGCCTGAACACACGCACT
AGAACCGCTTCGCCAGTTTCCCCACCTCACAGTTCTGACCCGCTAGGAGG
TATGACACATATTGTGAGCGATGACGTCGAGTTTTTTGACGAAGCCCAGG
AAGTCAACTCTGCCGGTTCTTCATTGTCCGGAGTTTTCGCTCCCTTGCGA
AGGATGACTCGAGAATTTGAGCCCAAGTCCCAGCCTTCATCTCCGAACTG
GCCTAATGTAGGATTTCCAAGACACAGAAGTGAGCCACATGTGGCCGCCA
ACCAAATCGCTGATATATCCTCACTTCTGGAACTGGCAAACACACCGTCT
GCGCTTATGGATCGAGCTCGCGAGACACGGCGACATGGTACGCAGGAAGG
AGTTCGTGATCGTGCGAAAGAGATCTCGAAAGAACTGGAAGGATGTCAGT
CGCCATCTGCTGCGTACTCTATGTTGAGGAGTATGATGGACTTCGCTTTT
GGTATTGTTGAATTCACAGCACTACTAGAACGACAACAAGCGCTTGATGA
TTACGGTGCGTTTCGAAAGATGGTAGAGATTCAGAACAGCTACCTAGAAC
ACGCAGGGGTGCAGAAGCTTTCATGTACGATTCTTGGGTCTTTGCGTATA
GATGAGAGCATAGGCGGCCTCAAGCTCGGTATGATGCAAACCGTGGACAC
AATAGTGCAATGCCTCAGGGAACACGGAAGAGTTGCTAGCATATGCCGGG
AAGGCATCCGTGCGCTAACGGCGCTATCCAAAATGAATGATGTGCGCACA
AGGGTTATTCCAACATGTAATGCAATTGGGGTCACGGTTGGTTGTATGGA
GCTCCACGCGGGTGATGAGGATGTGCAGAAGGAAGGCTCAAAGTTTTTTT
CACATGCATCACTTCATTCTGAGACAAACAAATCACACATTGCGATGCAT
GGTGGTCTTCGTCGCGCACTTCGGGCTGCCCGTGAATTCCCGGCGAGCCG
TGCTTTGCACACACATTTATGTACAACTATTAGAAACATTACTTTGGGTC
GACCTGACGTTGTGGCCCAGGCGGAGGTGCTTGAAAGCGTAGAAGCATTG
ATGGATACTTTGAAGCGACATGGTCAAGCGTCCACCACTGCGATACATGC
ATTGGCAGCTTTGCATCATCTGGCAACCTCTACTGAAAGCATCAGACGAA
TCCTTCGCTACGATTCATGGGAACATATCATTATTGGCACGGCAAGAAGG
CATAGCAGCAAACCAAATGTCCAAGCCCTAGTAATGGCGGTTTCTGGAAG
CCTAGTTGATGCTGGAGCGGAGCACACACCAGAGCGTTTGGTGCGAGCTG
GTGCTGTCAAAGCAGCTTTAACGGCGATGCATCGATTTGTTAACAGAAGA
GCAGTGTTACTTACTGGCTCTCATCTCGTTAAAGTCTTGTTGCTTGGGTG
TGAGGAAGGAATGGATGACCTTCACCAATGTGGGGGGATTGAGCGGTTGT
TGGATTTGCTGTATTGTACGGTAGTAGCACCTACCTCTGGAGAGGAACGG
TATAGTGGCTACGCGGATTCCTTAGACAATAGCTGA