Ggra4498.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4498.t1
Unique Name	Ggra4498.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	354

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:689053..690114 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	118163.Ple7327_0137
Preferred name	menA
PFAMs	UbiA
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC02935,RC02936,RC03264
KEGG ko	ko:K02548
KEGG Reaction	R05617,R06858,R10757
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00116
GOs	GO:0003674,GO:0003824,GO:0004659,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006766,GO:0006775,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009233,GO:0009234,GO:0009987,GO:0016740,GO:0016765,GO:0032194,GO:0042180,GO:0042181,GO:0042362,GO:0042371,GO:0042373,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Evalue	1.03e-68
EggNOG OGs	COG1575@1\|root,COG1575@2\|Bacteria,1G0WR@1117\|Cyanobacteria,3VI2U@52604\|Pleurocapsales
EC	2.5.1.74
Description	Involved in the synthesis of phylloquinone (vitamin K1). Catalyzes the transfer of a prenyl chain to 2-carboxy-1,4- naphthoquinone
COG category	H
BiGG Reaction	iJN678.menA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4498	Ggra4498	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 689053..690114 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4498.t1.start1	Ggra4498.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 689053..689055 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4498.t1.CDS1	Ggra4498.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 689053..690114 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4498.t1.exon1	Ggra4498.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 689053..690114 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4498.t1.stop1	Ggra4498.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 690112..690114 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4498.t1	Ggra4498.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 689053..690114 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:689053..690114+
coding sequence from alignment at tig00000898_pilon:689053..690114+

mRNA sequence

>Ggra4498.t1 ID=Ggra4498.t1|Name=Ggra4498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp
MSRAVRNRHQAAAPVTQLEYPPSSLAAPSSNKHLWLAALKPPMYTVAVTP
MTVGSLASFCHTNQFDLGRAVMLVSAAILVIAWLNLSNDAFDFDTGVDRN
KKESIVNLLGGTRNMRHVVLTVAFFFLAAAFTLFYLLFRNDMAPFCAIAV
AVFGGYMYQSPPFRLSYKGLGEVICFTSFFIATVAAYYSQANPFLHESLS
LSERLVALFLLPFHNQYVLCASSLVAYPTALILFCSHFHQIRDDAAVGKL
SPIVRMGTFVASRVLCVLVCLLFVLQTYFFYTNVLPIFPFFLSFFAFPVL
FNLAMFVYMYHDQPRIVRVSKYKAVLFHFVHGALLSLGYLLEGFDVLSLR
EGK*

spliced messenger RNA

>Ggra4498.t1 ID=Ggra4498.t1|Name=Ggra4498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000898_pilon:689053..690114+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCGCCGTACGCAACCGACATCAAGCAGCTGCGCCTGTCACACA
GCTTGAGTACCCACCTTCTTCTCTCGCTGCGCCTTCCTCGAACAAGCATC
TATGGTTAGCCGCACTCAAACCACCCATGTACACGGTGGCCGTCACTCCA
ATGACCGTCGGATCCTTAGCTTCTTTTTGTCACACCAATCAGTTCGACCT
TGGAAGGGCTGTCATGCTTGTCTCGGCTGCCATACTAGTCATTGCATGGC
TCAATCTTTCAAACGATGCGTTCGATTTTGACACTGGTGTTGATCGAAAC
AAGAAAGAGAGCATCGTCAATCTGCTTGGTGGCACACGCAACATGAGGCA
TGTGGTTCTCACTGTTGCCTTTTTCTTTCTTGCAGCTGCCTTCACTCTGT
TTTACCTTTTGTTCAGGAATGATATGGCACCGTTCTGCGCTATCGCCGTT
GCCGTCTTTGGCGGTTACATGTATCAAAGTCCCCCTTTCCGCCTCAGTTA
CAAAGGTCTTGGAGAAGTTATTTGTTTCACCTCCTTTTTCATTGCAACCG
TTGCCGCGTATTATTCCCAAGCCAATCCGTTCTTGCATGAATCCCTCTCT
CTTTCGGAACGATTGGTTGCTTTGTTTTTACTACCGTTCCATAACCAATA
CGTGCTATGTGCGTCGTCTCTCGTCGCCTACCCAACCGCTCTCATTCTTT
TTTGTTCCCATTTTCATCAAATCCGTGACGATGCAGCGGTTGGCAAGCTA
TCTCCTATTGTTCGAATGGGAACTTTTGTTGCATCACGAGTACTCTGCGT
CCTAGTTTGTTTATTGTTCGTATTGCAGACTTACTTCTTTTACACCAATG
TTTTGCCTATCTTCCCGTTCTTTCTTTCGTTCTTTGCCTTTCCAGTTCTC
TTTAATTTGGCTATGTTTGTTTACATGTATCATGATCAACCGAGGATTGT
TAGAGTTTCAAAATATAAGGCTGTTCTGTTTCACTTTGTACACGGTGCGT
TGCTTTCGTTGGGCTATCTTTTGGAAGGATTTGATGTACTTTCTCTGAGG
GAAGGAAAGTAA

protein sequence of Ggra4498.t1

>Ggra4498.t1 ID=Ggra4498.t1|Name=Ggra4498.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=354bp
MSRAVRNRHQAAAPVTQLEYPPSSLAAPSSNKHLWLAALKPPMYTVAVTP
MTVGSLASFCHTNQFDLGRAVMLVSAAILVIAWLNLSNDAFDFDTGVDRN
KKESIVNLLGGTRNMRHVVLTVAFFFLAAAFTLFYLLFRNDMAPFCAIAV
AVFGGYMYQSPPFRLSYKGLGEVICFTSFFIATVAAYYSQANPFLHESLS
LSERLVALFLLPFHNQYVLCASSLVAYPTALILFCSHFHQIRDDAAVGKL
SPIVRMGTFVASRVLCVLVCLLFVLQTYFFYTNVLPIFPFFLSFFAFPVL
FNLAMFVYMYHDQPRIVRVSKYKAVLFHFVHGALLSLGYLLEGFDVLSLR
EGK*

mRNA from alignment at tig00000898_pilon:689053..690114+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4498.t1 ID=Ggra4498.t1|Name=Ggra4498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000898_pilon:689053..690114+ (Gracilaria gracilis GNS1m male)
ATGAGTCGCGCCGTACGCAACCGACATCAAGCAGCTGCGCCTGTCACACA
GCTTGAGTACCCACCTTCTTCTCTCGCTGCGCCTTCCTCGAACAAGCATC
TATGGTTAGCCGCACTCAAACCACCCATGTACACGGTGGCCGTCACTCCA
ATGACCGTCGGATCCTTAGCTTCTTTTTGTCACACCAATCAGTTCGACCT
TGGAAGGGCTGTCATGCTTGTCTCGGCTGCCATACTAGTCATTGCATGGC
TCAATCTTTCAAACGATGCGTTCGATTTTGACACTGGTGTTGATCGAAAC
AAGAAAGAGAGCATCGTCAATCTGCTTGGTGGCACACGCAACATGAGGCA
TGTGGTTCTCACTGTTGCCTTTTTCTTTCTTGCAGCTGCCTTCACTCTGT
TTTACCTTTTGTTCAGGAATGATATGGCACCGTTCTGCGCTATCGCCGTT
GCCGTCTTTGGCGGTTACATGTATCAAAGTCCCCCTTTCCGCCTCAGTTA
CAAAGGTCTTGGAGAAGTTATTTGTTTCACCTCCTTTTTCATTGCAACCG
TTGCCGCGTATTATTCCCAAGCCAATCCGTTCTTGCATGAATCCCTCTCT
CTTTCGGAACGATTGGTTGCTTTGTTTTTACTACCGTTCCATAACCAATA
CGTGCTATGTGCGTCGTCTCTCGTCGCCTACCCAACCGCTCTCATTCTTT
TTTGTTCCCATTTTCATCAAATCCGTGACGATGCAGCGGTTGGCAAGCTA
TCTCCTATTGTTCGAATGGGAACTTTTGTTGCATCACGAGTACTCTGCGT
CCTAGTTTGTTTATTGTTCGTATTGCAGACTTACTTCTTTTACACCAATG
TTTTGCCTATCTTCCCGTTCTTTCTTTCGTTCTTTGCCTTTCCAGTTCTC
TTTAATTTGGCTATGTTTGTTTACATGTATCATGATCAACCGAGGATTGT
TAGAGTTTCAAAATATAAGGCTGTTCTGTTTCACTTTGTACACGGTGCGT
TGCTTTCGTTGGGCTATCTTTTGGAAGGATTTGATGTACTTTCTCTGAGG
GAAGGAAAGTAA

Coding sequence (CDS) from alignment at tig00000898_pilon:689053..690114+

>Ggra4498.t1 ID=Ggra4498.t1|Name=Ggra4498.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00000898_pilon:689053..690114+ (Gracilaria gracilis GNS1m male)
ATGAGTCGCGCCGTACGCAACCGACATCAAGCAGCTGCGCCTGTCACACA
GCTTGAGTACCCACCTTCTTCTCTCGCTGCGCCTTCCTCGAACAAGCATC
TATGGTTAGCCGCACTCAAACCACCCATGTACACGGTGGCCGTCACTCCA
ATGACCGTCGGATCCTTAGCTTCTTTTTGTCACACCAATCAGTTCGACCT
TGGAAGGGCTGTCATGCTTGTCTCGGCTGCCATACTAGTCATTGCATGGC
TCAATCTTTCAAACGATGCGTTCGATTTTGACACTGGTGTTGATCGAAAC
AAGAAAGAGAGCATCGTCAATCTGCTTGGTGGCACACGCAACATGAGGCA
TGTGGTTCTCACTGTTGCCTTTTTCTTTCTTGCAGCTGCCTTCACTCTGT
TTTACCTTTTGTTCAGGAATGATATGGCACCGTTCTGCGCTATCGCCGTT
GCCGTCTTTGGCGGTTACATGTATCAAAGTCCCCCTTTCCGCCTCAGTTA
CAAAGGTCTTGGAGAAGTTATTTGTTTCACCTCCTTTTTCATTGCAACCG
TTGCCGCGTATTATTCCCAAGCCAATCCGTTCTTGCATGAATCCCTCTCT
CTTTCGGAACGATTGGTTGCTTTGTTTTTACTACCGTTCCATAACCAATA
CGTGCTATGTGCGTCGTCTCTCGTCGCCTACCCAACCGCTCTCATTCTTT
TTTGTTCCCATTTTCATCAAATCCGTGACGATGCAGCGGTTGGCAAGCTA
TCTCCTATTGTTCGAATGGGAACTTTTGTTGCATCACGAGTACTCTGCGT
CCTAGTTTGTTTATTGTTCGTATTGCAGACTTACTTCTTTTACACCAATG
TTTTGCCTATCTTCCCGTTCTTTCTTTCGTTCTTTGCCTTTCCAGTTCTC
TTTAATTTGGCTATGTTTGTTTACATGTATCATGATCAACCGAGGATTGT
TAGAGTTTCAAAATATAAGGCTGTTCTGTTTCACTTTGTACACGGTGCGT
TGCTTTCGTTGGGCTATCTTTTGGAAGGATTTGATGTACTTTCTCTGAGG
GAAGGAAAGTAA