Ggra4491.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4491.t1
Unique NameGgra4491.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:636686..642184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue6.54e-12
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4491Ggra4491Gracilaria gracilis GNS1m malegenetig00000898_pilon 636686..642184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4491.t1Ggra4491.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 636686..642184 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4491.t1.start1Ggra4491.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 636686..636688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4491.t1.CDS1Ggra4491.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 636686..637191 +
Ggra4491.t1.CDS2Ggra4491.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 637348..637862 +
Ggra4491.t1.CDS3Ggra4491.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 641957..642002 +
Ggra4491.t1.CDS4Ggra4491.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000898_pilon 642109..642184 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4491.t1.exon1Ggra4491.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 636686..637191 +
Ggra4491.t1.exon2Ggra4491.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 637348..637862 +
Ggra4491.t1.exon3Ggra4491.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 641957..642002 +
Ggra4491.t1.exon4Ggra4491.t1.exon4Gracilaria gracilis GNS1m maleexontig00000898_pilon 642109..642184 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4491.t1.intron1Ggra4491.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 637192..637347 +
Ggra4491.t1.intron2Ggra4491.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 637863..641956 +
Ggra4491.t1.intron3Ggra4491.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000898_pilon 642003..642108 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4491.t1.stop1Ggra4491.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 642182..642184 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4491.t1 ID=Ggra4491.t1|Name=Ggra4491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MDDGTFPTLPSLIALDPVPTPLVVSSRGCSKLIPVKLVFAVVADILGDFP
VLKARGFTSEENAGYAHLVLVEPHIESFQTPSGYEWKDVAFMKSLKEDEE
YDRAYFASIKRAVHFLEKKPKLLRRFLEPRLQSGWSKRSNHWLRDTVHED
GAEVTGKTIEVNASSTSSLGFDDNPEEERDQFGMVRLLAEQQIASVAERA
TLLQGRLQLRGPKELQAELSKWAVDEDFCKVFGMRIKSFNELIPTIISIL
CRIEEYGIPITLVHGDFEERNIGYRPEKGRQPQHMIMFDWQYACISHPFF
DMHEFRAESSTDVTDEYLNKWSEYGSMEQIREVYDLSPGLAIYVGRSPST
APFSRFSMLHVLLTSLSSHVSRANKDSSED*
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spliced messenger RNA

>Ggra4491.t1 ID=Ggra4491.t1|Name=Ggra4491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000898_pilon:636686..642184+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGATGGGACTTTCCCTACTTTGCCTTCCTTGATTGCTCTCGATCC
TGTTCCGACACCACTTGTTGTGAGCTCCAGAGGGTGCTCCAAGTTGATTC
CGGTGAAACTTGTTTTCGCTGTCGTTGCTGATATTCTCGGGGACTTTCCG
GTCTTGAAAGCGCGTGGGTTCACCTCGGAGGAAAACGCTGGTTATGCTCA
CTTAGTGCTCGTTGAGCCTCATATTGAATCATTTCAAACTCCTAGCGGAT
ACGAATGGAAAGATGTTGCGTTCATGAAATCTTTGAAAGAGGATGAAGAG
TATGACCGAGCCTATTTCGCTTCTATTAAGAGGGCTGTGCACTTTTTGGA
AAAGAAGCCCAAATTGCTGCGAAGATTTCTTGAACCGCGCTTGCAAAGCG
GTTGGTCCAAGCGTTCTAATCATTGGTTGCGCGACACAGTTCATGAAGAT
GGAGCGGAAGTGACTGGAAAGACGATCGAAGTAAATGCCAGTTCAACATC
CAGCTTAGGCTTTGACGACAACCCAGAAGAAGAACGCGACCAATTCGGCA
TGGTTCGTCTCCTGGCTGAGCAGCAAATTGCCTCGGTGGCCGAGAGAGCA
ACGCTTCTACAAGGGCGTCTGCAGTTAAGGGGCCCAAAGGAACTGCAAGC
GGAGCTGAGCAAATGGGCAGTGGATGAAGACTTCTGTAAAGTATTTGGGA
TGAGGATCAAAAGCTTCAATGAGTTAATTCCCACAATCATAAGCATACTT
TGCCGCATAGAAGAATATGGTATCCCAATAACACTTGTACATGGAGATTT
TGAAGAAAGGAACATCGGTTACCGTCCTGAAAAAGGGAGACAACCCCAGC
ACATGATTATGTTTGATTGGCAATACGCTTGTATATCTCATCCGTTTTTT
GACATGCATGAGTTTAGAGCGGAGTCCAGCACCGACGTTACTGATGAATA
CCTGAATAAATGGAGTGAATATGGAAGCATGGAGCAGATAAGAGAAGTGT
ACGATCTATCACCTGGACTTGCCATTTATGTTGGTCGCTCACCATCAACA
GCTCCTTTTTCCCGTTTCTCTATGCTTCACGTTTTGTTAACTTCACTTTC
GAGCCACGTCTCGAGAGCCAACAAGGACTCTTCTGAGGACTAA
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protein sequence of Ggra4491.t1

>Ggra4491.t1 ID=Ggra4491.t1|Name=Ggra4491.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MDDGTFPTLPSLIALDPVPTPLVVSSRGCSKLIPVKLVFAVVADILGDFP
VLKARGFTSEENAGYAHLVLVEPHIESFQTPSGYEWKDVAFMKSLKEDEE
YDRAYFASIKRAVHFLEKKPKLLRRFLEPRLQSGWSKRSNHWLRDTVHED
GAEVTGKTIEVNASSTSSLGFDDNPEEERDQFGMVRLLAEQQIASVAERA
TLLQGRLQLRGPKELQAELSKWAVDEDFCKVFGMRIKSFNELIPTIISIL
CRIEEYGIPITLVHGDFEERNIGYRPEKGRQPQHMIMFDWQYACISHPFF
DMHEFRAESSTDVTDEYLNKWSEYGSMEQIREVYDLSPGLAIYVGRSPST
APFSRFSMLHVLLTSLSSHVSRANKDSSED*
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mRNA from alignment at tig00000898_pilon:636686..642184+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4491.t1 ID=Ggra4491.t1|Name=Ggra4491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=5499bp|location=Sequence derived from alignment at tig00000898_pilon:636686..642184+ (Gracilaria gracilis GNS1m male)
ATGGACGATGGGACTTTCCCTACTTTGCCTTCCTTGATTGCTCTCGATCC
TGTTCCGACACCACTTGTTGTGAGCTCCAGAGGGTGCTCCAAGTTGATTC
CGGTGAAACTTGTTTTCGCTGTCGTTGCTGATATTCTCGGGGACTTTCCG
GTCTTGAAAGCGCGTGGGTTCACCTCGGAGGAAAACGCTGGTTATGCTCA
CTTAGTGCTCGTTGAGCCTCATATTGAATCATTTCAAACTCCTAGCGGAT
ACGAATGGAAAGATGTTGCGTTCATGAAATCTTTGAAAGAGGATGAAGAG
TATGACCGAGCCTATTTCGCTTCTATTAAGAGGGCTGTGCACTTTTTGGA
AAAGAAGCCCAAATTGCTGCGAAGATTTCTTGAACCGCGCTTGCAAAGCG
GTTGGTCCAAGCGTTCTAATCATTGGTTGCGCGACACAGTTCATGAAGAT
GGAGCGGAAGTGACTGGAAAGACGATCGAAGTAAATGCCAGTTCAACATC
CAGCTTGTATAAAGTGAAATCTACACAAGGATGGTAATTTTTGAAGGCTC
CAGGCGCTGGCTGCCGTGAAATGGAGATAACCGTAACTCTCGCGCGGTTA
TTCCCATGGGCAACGGTTGATGTCGTGGCTTACAGCGAACAGCTCTGAGG
CTTTGTTACTAGAGGCTTTGACGACAACCCAGAAGAAGAACGCGACCAAT
TCGGCATGGTTCGTCTCCTGGCTGAGCAGCAAATTGCCTCGGTGGCCGAG
AGAGCAACGCTTCTACAAGGGCGTCTGCAGTTAAGGGGCCCAAAGGAACT
GCAAGCGGAGCTGAGCAAATGGGCAGTGGATGAAGACTTCTGTAAAGTAT
TTGGGATGAGGATCAAAAGCTTCAATGAGTTAATTCCCACAATCATAAGC
ATACTTTGCCGCATAGAAGAATATGGTATCCCAATAACACTTGTACATGG
AGATTTTGAAGAAAGGAACATCGGTTACCGTCCTGAAAAAGGGAGACAAC
CCCAGCACATGATTATGTTTGATTGGCAATACGCTTGTATATCTCATCCG
TTTTTTGACATGCATGAGTTTAGAGCGGAGTCCAGCACCGACGTTACTGA
TGAATACCTGAATAAATGGAGTGAATATGGAAGCATGGAGCAGATAAGAG
AAGTGTACGATCTATCACCTGGACTTGGTTGGCTACTGAAGATGTGGACA
TCATTTGAAAGCTACAAAGCGTCTCAGTACCAGTTGTATTCACCTGTATC
CGAATTCATGTTCCAATGCTTCGAGGCCATGGAACAAGAACTGAGAGGTT
GACTTGATCAAAAGGACTAAATGCTCAACGAGTACCGGAGTCACAGGCAG
ACCCCactcttcgctccacgcatcagacattgagtgcagatccaacctct
ctttcaaacctggatcaggacctccccaactatgcctcaaccgcgccatc
tattgacggggttcttctttagtatggacgctgtgttccaattcctaaca
catcagagagctatcctacagatacttctcttcctaaggaagaccagaat
ctttttcggtgtcttcaatatgatgaactatagacttttttctcgttgag
catggaaaagctcgcggcgactcccatttgtaagggcacaccgtagtgct
acgtgatcacagtctttcttcactgctatcgcgcaatcacaacgtaactt
tttgttgtcgacatagctTGTTCCAATCTCTGACCTGCCCCAAGAATGGC
TGGTGTCAGGGTTGGTGCGACGATGAGAGCCTAGACAGAGCAAAGGCGGC
TGATTTGTGCAAGAAACTTAATGACAAAGAAACCAAAGTTCTCTAGCGCA
ACGCGGTTCATCCGAGAATGGGTATTTTCGGTGGTTTATGACAACGTTGC
CAGTGATCTGACGAGGAACTATACGATATATACAATCTTATGCTGCACCA
AATAGAACCTCAGAAAGTACATCATGTGACGCATCAGGTTATGTTAAGAT
GAACTAATCATACTAATGAGGCCGTAATGGCCATCGTTGGCATCAAAGAA
GAAGCGCCAGCTATTGAAGTTAACCCTTCGTACTTCATTCACATGGTACG
AACTTCGTACTACAGATCTAGAGCGTTACGAAGGTACCAACGATACCTTC
GTGGCGTGGCAAGTTTCCATAACCGTTACCTCTGTGGCGGCCTCTACAGT
TTCCTCTTTTGGCTGCTGCTGCTGCTGATAGGCAGGAATTGTCTTCGTAT
CCGGATATCTCGTCTTGATGTGTGGTTAGCTGCTAACCACTGCCAACTTG
GCAGTACTTGTGGTTTCTGAGTGAGCGCTAGCCTCAGAATTGTCTGCAAG
GTCATTGAGAACTCATGGCCACAAACTGGCCGAAAGCAAGGCGCATAAAA
AGGGCGACACAGTCCCAGTGAAGACATAGGGAAGGAGAAAGCATACGTTC
TTGGGCATGCTCGTGTAACTCGCAACGCGCAATACCATTTTAGTTCTGCA
TGTTGTGGACTATCAGCCTATGGTTACGAAGGCAATGAAATGGAAGTGCA
GACATCCCCTTGTGTAAAGCTAGTATACTGCGGCAGTATTTCTGCCTGAT
GCAAGGATGTGGAAGGTAGAGGGGAATGCAGGCAAAAAGGTTAAGGCTAA
AATAGTTCTGTTCGCCCGTAAGACTAAATAACTATCTAGGTTTGCCGTAC
Tttttcttattcttcttcttaattgtgagcgagatacacctatttattct
cgtgtcgcgtggggttcataaaaggaatccccaatacctataacgcgtct
ttgataagctagctacaaactaaaactcctcagctgtgttacgctcactg
aggtatgttttgttacgaaaaacagcgttaggtcttagaggtactctcgg
ctgcgtgagcatttcgctaccgacaatcatcgccattgtatcccatgttc
ctattcatgttcgtcgtacctcttcattcaccctcgttatgggtcatcgg
cagaggggcacaccacgacaaggcgctctgcacgggccacgttgtgccac
ccttgagaccatgacagcatccccttttctaacccccatgccttcggcaa
cattagataaagagaaccagcACTCGTCGGCCGTACCTTTTGCTGCGATA
AAATCGACGAAACCCAACAGAGAACGACGCTCCGTAAGTTGTGAAGCTCA
AAAGGAACTTCGGGTTTTGGCAATCTTGTTCCATCTTAAAAACAATCGAT
TGCACATTAAAATTTtatggtttattactccctattttgaagcaataaga
gaactacagtattacatataaccctctctcctaagaaaggccaaaaactt
tgaaggccattctctaatcatatcaatcatagtcttgtcttttgtttcct
ctagagtcggtaactcattccgtctcgaacaatttgtcaatgggcaccga
aacaaaacatggtctactccctttttcacttctgtatcacattggcatct
tgatagctttttgtctacgtaggtagagactgggtgaaggttgtaaacgt
ggctagttgaaaactgagccaagaccacttccgccttccgtgcctccaag
tcgtttgcaattgacgttaggcagtcctgtgcaatactctttgtgctttt
cgtggtcttcagtagcgccttaatgtcagataagtctgctggcacttcga
actgaacctgaagcggtagagctagacctgatttggccaattcatcaCAT
ttatttctattacaacacacataaactttcagtgttgaaagggttaaCAG
CAATACAAAATTGCAATTCCTGGTTCGGAGCTATCGCTGATTGTAAAGGG
GTCATTGCAATCGATTGTTCACCCAATCGATTGCAATCCGTCCTTGTGAA
AGCTACAACAGTGCTAAAACAGCACTAAAGTTCTAGTGCTCAAAGGCTGT
GGGGTACAGCACAACAGCACACATGAAGCAACCTTAGTTAACTTTTACTC
TCTGACGACACACATGTAACAAAAAGGTTTTTGTTTTTGAAAGCTATAAA
AACAACAAAATGGGTGCCACTGTGCTCATAGAGAGAGGTGGAGAGGGAGA
GTACGAGGATATCTAATTGCTCTTTTACTAGCCCGAGGCTCACCGGGGGC
CAATAGTATCAAATTGATCGTGGCATTGCTCTTCGATGGAGTGTTATCAA
TAGCTTTAAGTACACACATTTTCGAGCAGTCCcttcttcttttttattgt
ggtcaaccgcccctgatttcgaggcggcagtagttctatctagagatagt
tctctctcttgaagaaggccaaaaaccgtaacgagcagtgccttTTCTCA
TGGAATCAACAGCTTCTACACGATAACTGGGCTGAACGAACTCCAAACTC
TCAGACGATACGAATGGCAATGGTGTAATATAGATAGGAGCGATAGCCCT
CTTCTCCCTCTTACACAATAACtgcaacagagacttctgacggaggcgag
taggagctgacagtgagtggagctcggcgcacggaaacaggccagcgtga
cctggaaatgcaggcaccgtgcacacagtcgcgtaatctagcccggaagc
actcaggagagtgatgtcgtggcgggtcaattgtagttttgtagttactt
ctagagtgcaactccaggcggcggtgttcccgccactttgggagagggct
gacacgcaatggagcgcgctttaagcgctgacatgcagccgacggggaac
ttcaccccttcaaatagcctggagggcgagacagtagtcgaccctcggag
gaggggtatcgaagaacagacgaaaggacgatcagtaaacatCAGTTGTT
AAAATAACAGCTGCAGAAAAGCAGAGATATATTCCCGAGATAAAAACTTT
ACAATTTATTGTACCAATAATATGCAGTAGTTCTtctcttctctctctct
ctctctttgtggactttaattcttctattcctggagttaaggaaaacttt
gtctacacttcttctcttctACGGTCCTGGGAAATAATTGTTGTGTCGCT
AGCAGTCAAACCCTTCTATCCTGGTTTTCAAAGCCAGCAAACGGTTGCTC
AACCTTCGTTTTGTTGATGGCGGCTCCGAGCTGCTGCAGCAGCTACTACA
AGAGAGGCTTTAGAAGCTACTGACGAGTCAGCTGACCCGCCTCGATATCG
ATATCTCAATTCAGTTCCGCTGTAAATGCTTGAAAGGCAAAGGGCGTCGA
CTGAAGATTTATAGACCGCAGCCATTTATGTTGGTCGCTCACCATCAACA
GCTCCTTTTTCCCGTTTGTGAGTCATGAACCTCCTCTTCGACTGACAAAC
GTAATCAATATCGCTTGTCTTGTTCTTTATTTAAGCTAACCCTCTTACCT
CTTGTCGACCATCAATCTCACAGCTCTATGCTTCACGTTTTGTTAACTTC
ACTTTCGAGCCACGTCTCGAGAGCCAACAAGGACTCTTCTGAGGACTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:636686..642184+

>Ggra4491.t1 ID=Ggra4491.t1|Name=Ggra4491.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000898_pilon:636686..642184+ (Gracilaria gracilis GNS1m male)
ATGGACGATGGGACTTTCCCTACTTTGCCTTCCTTGATTGCTCTCGATCC
TGTTCCGACACCACTTGTTGTGAGCTCCAGAGGGTGCTCCAAGTTGATTC
CGGTGAAACTTGTTTTCGCTGTCGTTGCTGATATTCTCGGGGACTTTCCG
GTCTTGAAAGCGCGTGGGTTCACCTCGGAGGAAAACGCTGGTTATGCTCA
CTTAGTGCTCGTTGAGCCTCATATTGAATCATTTCAAACTCCTAGCGGAT
ACGAATGGAAAGATGTTGCGTTCATGAAATCTTTGAAAGAGGATGAAGAG
TATGACCGAGCCTATTTCGCTTCTATTAAGAGGGCTGTGCACTTTTTGGA
AAAGAAGCCCAAATTGCTGCGAAGATTTCTTGAACCGCGCTTGCAAAGCG
GTTGGTCCAAGCGTTCTAATCATTGGTTGCGCGACACAGTTCATGAAGAT
GGAGCGGAAGTGACTGGAAAGACGATCGAAGTAAATGCCAGTTCAACATC
CAGCTTAGGCTTTGACGACAACCCAGAAGAAGAACGCGACCAATTCGGCA
TGGTTCGTCTCCTGGCTGAGCAGCAAATTGCCTCGGTGGCCGAGAGAGCA
ACGCTTCTACAAGGGCGTCTGCAGTTAAGGGGCCCAAAGGAACTGCAAGC
GGAGCTGAGCAAATGGGCAGTGGATGAAGACTTCTGTAAAGTATTTGGGA
TGAGGATCAAAAGCTTCAATGAGTTAATTCCCACAATCATAAGCATACTT
TGCCGCATAGAAGAATATGGTATCCCAATAACACTTGTACATGGAGATTT
TGAAGAAAGGAACATCGGTTACCGTCCTGAAAAAGGGAGACAACCCCAGC
ACATGATTATGTTTGATTGGCAATACGCTTGTATATCTCATCCGTTTTTT
GACATGCATGAGTTTAGAGCGGAGTCCAGCACCGACGTTACTGATGAATA
CCTGAATAAATGGAGTGAATATGGAAGCATGGAGCAGATAAGAGAAGTGT
ACGATCTATCACCTGGACTTGCCATTTATGTTGGTCGCTCACCATCAACA
GCTCCTTTTTCCCGTTTCTCTATGCTTCACGTTTTGTTAACTTCACTTTC
GAGCCACGTCTCGAGAGCCAACAAGGACTCTTCTGAGGACTAA
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