Ggra4488.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4488.t1
Unique NameGgra4488.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length737
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:628600..630810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_07499T0
PFAMsAlk_phosphatase
Max annot lvl4751|Fungi
Evalue8.15e-135
EggNOG OGsCOG1785@1|root,KOG4126@2759|Eukaryota,38GD6@33154|Opisthokonta,3NU5V@4751|Fungi,1GSSH@112252|Fungi incertae sedis
DescriptionMortierella verticillata NRRL 6337
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4488Ggra4488Gracilaria gracilis GNS1m malegenetig00000898_pilon 628600..630810 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4488.t1.stop1Ggra4488.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 628600..628602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4488.t1.CDS1Ggra4488.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 628600..630810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4488.t1.exon1Ggra4488.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 628600..630810 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4488.t1.start1Ggra4488.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 630808..630810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4488.t1Ggra4488.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 628600..630810 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4488.t1 ID=Ggra4488.t1|Name=Ggra4488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=737bp
MKFANFVLVSAALCASAYALQKPERHFGCPSGKNVCIYPIDDANLQCETF
FDFQVALHIPEDATINKEFRQAMDIKLTLPSGDVLTPEALFGKEPELRNW
TLEAFEDQADETPEGFKSYAVMYRNVFIDKKYGKGPAKVTVFARGVTTEV
TYIVREPTKRRAKNVVLFVGDGMSLPMMAAARLVSRGMVHGKYKDLLHME
KMPYFGLQNPSGVDSIITDSANSATSMNTGQKSSVNALGVYADSGDDDFA
HPKQETIAEHIKRKFGMSVGVVTTAEIQDATPAAVWAHVRRRAEKAAITA
QAINGCKDCVLPVQPDVIMGGGGKYFKPDRSIDGSNMYSNFSSKGYTVTH
TRAEMIAAAEDATTEKLLTVSHNGNMEVWLDRNVYTDNMDDADNSPTVDG
PAPVDQPNLDEMVMSAIKVLSKNENGFYLMVEAASVDKSAHPLDVPRTLS
DLIEMDNTVSQVKTWAKENGDDTLIIATADHGHGFDVFGTVDTKIWDDAV
AASEENPIADVDNYCGAVVANDGTVFNASVEETSGMTIRESNRARRTAIG
TYSNAGYPDYADSDGDGFPDTWDVRTTLAAGMNNFPDHTEDYKVSTSIKK
PALRTELGYFNNPEDDPNGIFLSGNIGSTGSTGVHTMQDVGVFGYGPGAE
KVGGNMDNTEIFHIIASALGFGTDGEIDTDEYLYSDVVKCKHDDKLCHCG
EVGEGYACACSKNGPTSFVLPNNKLCYIKDGSVMPM*
back to top

spliced messenger RNA

>Ggra4488.t1 ID=Ggra4488.t1|Name=Ggra4488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2211bp|location=Sequence derived from alignment at tig00000898_pilon:628600..630810- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTCGCTAACTTCGTTCTTGTTTCTGCTGCTCTCTGTGCATCTGC
GTATGCTCTACAGAAGCCTGAGCGTCATTTCGGCTGTCCGTCAGGCAAGA
ACGTGTGTATTTATCCCATTGATGATGCTAACCTGCAGTGTGAAACGTTT
TTTGACTTTCAAGTTGCTCTTCACATCCCGGAGGATGCAACTATTAACAA
GGAATTCCGTCAGGCAATGGATATCAAACTAACCCTCCCGTCCGGTGACG
TTCTCACTCCGGAGGCTCTTTTCGGCAAGGAACCTGAGCTCAGGAATTGG
ACGCTCGAGGCCTTCGAGGATCAGGCTGATGAGACTCCGGAAGGCTTCAA
GTCCTATGCTGTTATGTACCGTAACGTCTTCATCGACAAGAAGTACGGTA
AGGGCCCTGCCAAGGTCACCGTCTTTGCCCGCGGTGTCACCACCGAAGTC
ACCTACATTGTGCGTGAGCCCACAAAGAGACGTGCTAAGAACGTCGTACT
CTTTGTTGGTGACGGTATGTCGCTCCCGATGATGGCCGCGGCTCGTCTCG
TTTCTCGTGGTATGGTGCACGGAAAGTATAAGGATCTTCTCCATATGGAG
AAGATGCCCTACTTCGGCCTTCAGAACCCGTCTGGTGTTGACTCTATTAT
CACTGATTCCGCCAACTCGGCTACCTCCATGAATACTGGACAGAAATCAT
CTGTCAATGCCCTCGGTGTGTATGCAGATTCTGGTGATGACGACTTTGCT
CACCCGAAGCAGGAGACCATTGCCGAGCACATCAAGCGCAAATTTGGTAT
GTCAGTGGGTGTTGTCACCACCGCAGAGATTCAAGACGCCACTCCGGCTG
CCGTCTGGGCTCACGTCCGTCGTCGTGCTGAGAAGGCTGCTATCACTGCT
CAGGCTATCAACGGCTGCAAGGACTGCGTGTTGCCGGTGCAACCTGATGT
CATCATGGGAGGTGGTGGCAAGTACTTCAAGCCGGACCGCTCCATCGATG
GCTCTAACATGTACTCGAACTTCTCGTCGAAGGGCTATACCGTCACTCAC
ACTCGCGCAGAGATGATAGCTGCCGCAGAAGATGCAACCACTGAGAAGCT
TCTCACCGTCTCTCACAACGGCAACATGGAGGTGTGGCTTGATAGAAATG
TCTACACTGACAACATGGACGATGCCGACAACTCTCCGACTGTTGACGGT
CCGGCTCCGGTTGACCAGCCCAACCTCGATGAGATGGTTATGTCCGCCAT
CAAAGTGCTCTCCAAGAATGAGAATGGTTTCTATCTCATGGTCGAGGCTG
CCTCTGTTGACAAATCTGCCCATCCGCTCGATGTGCCACGTACACTCTCT
GACTTGATTGAGATGGATAACACTGTCAGTCAAGTCAAGACCTGGGCCAA
GGAGAACGGTGATGATACCCTCATTATCGCCACAGCTGATCATGGCCATG
GTTTCGATGTTTTTGGTACTGTCGATACCAAGATCTGGGACGATGCTGTC
GCCGCCAGCGAGGAGAACCCTATCGCTGATGTCGACAACTACTGCGGTGC
AGTAGTCGCCAACGACGGCACCGTTTTCAACGCGTCCGTGGAAGAAACTT
CTGGTATGACTATTCGCGAATCTAACCGTGCTCGTCGTACTGCTATCGGT
ACCTATTCCAACGCTGGTTATCCCGATTACGCTGACAGTGATGGCGACGG
TTTTCCGGATACCTGGGATGTCCGCACTACTCTTGCGGCGGGTATGAACA
ATTTCCCTGACCACACTGAGGACTACAAGGTGTCCACTTCTATCAAGAAG
CCAGCTCTCCGAACTGAGCTTGGCTATTTCAACAACCCGGAAGATGATCC
GAACGGCATTTTCCTTTCCGGTAACATTGGTTCGACAGGCTCCACTGGTG
TACACACCATGCAAGACGTCGGTGTATTTGGATACGGCCCAGGGGCTGAG
AAGGTTGGCGGTAACATGGACAATACTGAAATCTTCCATATCATTGCGTC
AGCCCTTGGTTTCGGTACTGACGGTGAGATAGACACTGACGAGTATCTCT
ACAGCGACGTTGTGAAGTGCAAGCATGATGATAAGTTATGCCATTGCGGG
GAAGTAGGAGAGGGCTACGCCTGCGCCTGTTCGAAAAATGGTCCGACTTC
CTTCGTACTTCCGAATAACAAGCTGTGCTACATTAAGGATGGTAGCGTGA
TGCCGATGTAA
back to top

protein sequence of Ggra4488.t1

>Ggra4488.t1 ID=Ggra4488.t1|Name=Ggra4488.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=737bp
MKFANFVLVSAALCASAYALQKPERHFGCPSGKNVCIYPIDDANLQCETF
FDFQVALHIPEDATINKEFRQAMDIKLTLPSGDVLTPEALFGKEPELRNW
TLEAFEDQADETPEGFKSYAVMYRNVFIDKKYGKGPAKVTVFARGVTTEV
TYIVREPTKRRAKNVVLFVGDGMSLPMMAAARLVSRGMVHGKYKDLLHME
KMPYFGLQNPSGVDSIITDSANSATSMNTGQKSSVNALGVYADSGDDDFA
HPKQETIAEHIKRKFGMSVGVVTTAEIQDATPAAVWAHVRRRAEKAAITA
QAINGCKDCVLPVQPDVIMGGGGKYFKPDRSIDGSNMYSNFSSKGYTVTH
TRAEMIAAAEDATTEKLLTVSHNGNMEVWLDRNVYTDNMDDADNSPTVDG
PAPVDQPNLDEMVMSAIKVLSKNENGFYLMVEAASVDKSAHPLDVPRTLS
DLIEMDNTVSQVKTWAKENGDDTLIIATADHGHGFDVFGTVDTKIWDDAV
AASEENPIADVDNYCGAVVANDGTVFNASVEETSGMTIRESNRARRTAIG
TYSNAGYPDYADSDGDGFPDTWDVRTTLAAGMNNFPDHTEDYKVSTSIKK
PALRTELGYFNNPEDDPNGIFLSGNIGSTGSTGVHTMQDVGVFGYGPGAE
KVGGNMDNTEIFHIIASALGFGTDGEIDTDEYLYSDVVKCKHDDKLCHCG
EVGEGYACACSKNGPTSFVLPNNKLCYIKDGSVMPM*
back to top

mRNA from alignment at tig00000898_pilon:628600..630810-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4488.t1 ID=Ggra4488.t1|Name=Ggra4488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2211bp|location=Sequence derived from alignment at tig00000898_pilon:628600..630810- (Gracilaria gracilis GNS1m male)
ATGAAGTTCGCTAACTTCGTTCTTGTTTCTGCTGCTCTCTGTGCATCTGC
GTATGCTCTACAGAAGCCTGAGCGTCATTTCGGCTGTCCGTCAGGCAAGA
ACGTGTGTATTTATCCCATTGATGATGCTAACCTGCAGTGTGAAACGTTT
TTTGACTTTCAAGTTGCTCTTCACATCCCGGAGGATGCAACTATTAACAA
GGAATTCCGTCAGGCAATGGATATCAAACTAACCCTCCCGTCCGGTGACG
TTCTCACTCCGGAGGCTCTTTTCGGCAAGGAACCTGAGCTCAGGAATTGG
ACGCTCGAGGCCTTCGAGGATCAGGCTGATGAGACTCCGGAAGGCTTCAA
GTCCTATGCTGTTATGTACCGTAACGTCTTCATCGACAAGAAGTACGGTA
AGGGCCCTGCCAAGGTCACCGTCTTTGCCCGCGGTGTCACCACCGAAGTC
ACCTACATTGTGCGTGAGCCCACAAAGAGACGTGCTAAGAACGTCGTACT
CTTTGTTGGTGACGGTATGTCGCTCCCGATGATGGCCGCGGCTCGTCTCG
TTTCTCGTGGTATGGTGCACGGAAAGTATAAGGATCTTCTCCATATGGAG
AAGATGCCCTACTTCGGCCTTCAGAACCCGTCTGGTGTTGACTCTATTAT
CACTGATTCCGCCAACTCGGCTACCTCCATGAATACTGGACAGAAATCAT
CTGTCAATGCCCTCGGTGTGTATGCAGATTCTGGTGATGACGACTTTGCT
CACCCGAAGCAGGAGACCATTGCCGAGCACATCAAGCGCAAATTTGGTAT
GTCAGTGGGTGTTGTCACCACCGCAGAGATTCAAGACGCCACTCCGGCTG
CCGTCTGGGCTCACGTCCGTCGTCGTGCTGAGAAGGCTGCTATCACTGCT
CAGGCTATCAACGGCTGCAAGGACTGCGTGTTGCCGGTGCAACCTGATGT
CATCATGGGAGGTGGTGGCAAGTACTTCAAGCCGGACCGCTCCATCGATG
GCTCTAACATGTACTCGAACTTCTCGTCGAAGGGCTATACCGTCACTCAC
ACTCGCGCAGAGATGATAGCTGCCGCAGAAGATGCAACCACTGAGAAGCT
TCTCACCGTCTCTCACAACGGCAACATGGAGGTGTGGCTTGATAGAAATG
TCTACACTGACAACATGGACGATGCCGACAACTCTCCGACTGTTGACGGT
CCGGCTCCGGTTGACCAGCCCAACCTCGATGAGATGGTTATGTCCGCCAT
CAAAGTGCTCTCCAAGAATGAGAATGGTTTCTATCTCATGGTCGAGGCTG
CCTCTGTTGACAAATCTGCCCATCCGCTCGATGTGCCACGTACACTCTCT
GACTTGATTGAGATGGATAACACTGTCAGTCAAGTCAAGACCTGGGCCAA
GGAGAACGGTGATGATACCCTCATTATCGCCACAGCTGATCATGGCCATG
GTTTCGATGTTTTTGGTACTGTCGATACCAAGATCTGGGACGATGCTGTC
GCCGCCAGCGAGGAGAACCCTATCGCTGATGTCGACAACTACTGCGGTGC
AGTAGTCGCCAACGACGGCACCGTTTTCAACGCGTCCGTGGAAGAAACTT
CTGGTATGACTATTCGCGAATCTAACCGTGCTCGTCGTACTGCTATCGGT
ACCTATTCCAACGCTGGTTATCCCGATTACGCTGACAGTGATGGCGACGG
TTTTCCGGATACCTGGGATGTCCGCACTACTCTTGCGGCGGGTATGAACA
ATTTCCCTGACCACACTGAGGACTACAAGGTGTCCACTTCTATCAAGAAG
CCAGCTCTCCGAACTGAGCTTGGCTATTTCAACAACCCGGAAGATGATCC
GAACGGCATTTTCCTTTCCGGTAACATTGGTTCGACAGGCTCCACTGGTG
TACACACCATGCAAGACGTCGGTGTATTTGGATACGGCCCAGGGGCTGAG
AAGGTTGGCGGTAACATGGACAATACTGAAATCTTCCATATCATTGCGTC
AGCCCTTGGTTTCGGTACTGACGGTGAGATAGACACTGACGAGTATCTCT
ACAGCGACGTTGTGAAGTGCAAGCATGATGATAAGTTATGCCATTGCGGG
GAAGTAGGAGAGGGCTACGCCTGCGCCTGTTCGAAAAATGGTCCGACTTC
CTTCGTACTTCCGAATAACAAGCTGTGCTACATTAAGGATGGTAGCGTGA
TGCCGATGTAA
back to top

Coding sequence (CDS) from alignment at tig00000898_pilon:628600..630810-

>Ggra4488.t1 ID=Ggra4488.t1|Name=Ggra4488.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2211bp|location=Sequence derived from alignment at tig00000898_pilon:628600..630810- (Gracilaria gracilis GNS1m male)
ATGAAGTTCGCTAACTTCGTTCTTGTTTCTGCTGCTCTCTGTGCATCTGC
GTATGCTCTACAGAAGCCTGAGCGTCATTTCGGCTGTCCGTCAGGCAAGA
ACGTGTGTATTTATCCCATTGATGATGCTAACCTGCAGTGTGAAACGTTT
TTTGACTTTCAAGTTGCTCTTCACATCCCGGAGGATGCAACTATTAACAA
GGAATTCCGTCAGGCAATGGATATCAAACTAACCCTCCCGTCCGGTGACG
TTCTCACTCCGGAGGCTCTTTTCGGCAAGGAACCTGAGCTCAGGAATTGG
ACGCTCGAGGCCTTCGAGGATCAGGCTGATGAGACTCCGGAAGGCTTCAA
GTCCTATGCTGTTATGTACCGTAACGTCTTCATCGACAAGAAGTACGGTA
AGGGCCCTGCCAAGGTCACCGTCTTTGCCCGCGGTGTCACCACCGAAGTC
ACCTACATTGTGCGTGAGCCCACAAAGAGACGTGCTAAGAACGTCGTACT
CTTTGTTGGTGACGGTATGTCGCTCCCGATGATGGCCGCGGCTCGTCTCG
TTTCTCGTGGTATGGTGCACGGAAAGTATAAGGATCTTCTCCATATGGAG
AAGATGCCCTACTTCGGCCTTCAGAACCCGTCTGGTGTTGACTCTATTAT
CACTGATTCCGCCAACTCGGCTACCTCCATGAATACTGGACAGAAATCAT
CTGTCAATGCCCTCGGTGTGTATGCAGATTCTGGTGATGACGACTTTGCT
CACCCGAAGCAGGAGACCATTGCCGAGCACATCAAGCGCAAATTTGGTAT
GTCAGTGGGTGTTGTCACCACCGCAGAGATTCAAGACGCCACTCCGGCTG
CCGTCTGGGCTCACGTCCGTCGTCGTGCTGAGAAGGCTGCTATCACTGCT
CAGGCTATCAACGGCTGCAAGGACTGCGTGTTGCCGGTGCAACCTGATGT
CATCATGGGAGGTGGTGGCAAGTACTTCAAGCCGGACCGCTCCATCGATG
GCTCTAACATGTACTCGAACTTCTCGTCGAAGGGCTATACCGTCACTCAC
ACTCGCGCAGAGATGATAGCTGCCGCAGAAGATGCAACCACTGAGAAGCT
TCTCACCGTCTCTCACAACGGCAACATGGAGGTGTGGCTTGATAGAAATG
TCTACACTGACAACATGGACGATGCCGACAACTCTCCGACTGTTGACGGT
CCGGCTCCGGTTGACCAGCCCAACCTCGATGAGATGGTTATGTCCGCCAT
CAAAGTGCTCTCCAAGAATGAGAATGGTTTCTATCTCATGGTCGAGGCTG
CCTCTGTTGACAAATCTGCCCATCCGCTCGATGTGCCACGTACACTCTCT
GACTTGATTGAGATGGATAACACTGTCAGTCAAGTCAAGACCTGGGCCAA
GGAGAACGGTGATGATACCCTCATTATCGCCACAGCTGATCATGGCCATG
GTTTCGATGTTTTTGGTACTGTCGATACCAAGATCTGGGACGATGCTGTC
GCCGCCAGCGAGGAGAACCCTATCGCTGATGTCGACAACTACTGCGGTGC
AGTAGTCGCCAACGACGGCACCGTTTTCAACGCGTCCGTGGAAGAAACTT
CTGGTATGACTATTCGCGAATCTAACCGTGCTCGTCGTACTGCTATCGGT
ACCTATTCCAACGCTGGTTATCCCGATTACGCTGACAGTGATGGCGACGG
TTTTCCGGATACCTGGGATGTCCGCACTACTCTTGCGGCGGGTATGAACA
ATTTCCCTGACCACACTGAGGACTACAAGGTGTCCACTTCTATCAAGAAG
CCAGCTCTCCGAACTGAGCTTGGCTATTTCAACAACCCGGAAGATGATCC
GAACGGCATTTTCCTTTCCGGTAACATTGGTTCGACAGGCTCCACTGGTG
TACACACCATGCAAGACGTCGGTGTATTTGGATACGGCCCAGGGGCTGAG
AAGGTTGGCGGTAACATGGACAATACTGAAATCTTCCATATCATTGCGTC
AGCCCTTGGTTTCGGTACTGACGGTGAGATAGACACTGACGAGTATCTCT
ACAGCGACGTTGTGAAGTGCAAGCATGATGATAAGTTATGCCATTGCGGG
GAAGTAGGAGAGGGCTACGCCTGCGCCTGTTCGAAAAATGGTCCGACTTC
CTTCGTACTTCCGAATAACAAGCTGTGCTACATTAAGGATGGTAGCGTGA
TGCCGATGTAA
back to top