Ggra4486.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4486.t1
Unique NameGgra4486.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:622750..623658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4486Ggra4486Gracilaria gracilis GNS1m malegenetig00000898_pilon 622750..623658 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4486.t1.start1Ggra4486.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 622750..622752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4486.t1.CDS1Ggra4486.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 622750..623658 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4486.t1.exon1Ggra4486.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 622750..623658 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4486.t1.stop1Ggra4486.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 623656..623658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4486.t1Ggra4486.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 622750..623658 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4486.t1 ID=Ggra4486.t1|Name=Ggra4486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MRCQRHAPAATARATGSPTSPACRRAVQFAAQLRSLPVALRPPTPRAPAV
AMQPPPSQLPLAEPQRFDWTNLPADVKQLILDAVSLPSLLHKLQQVFPRD
APLCVHTRIAALSELWRAWVVSPIDVRNVPSFRTQHARRACLPTQFCFLR
RLVLGSSSFRRLPVAITEFVELRVLHLDHNHLQQLPDCISACSSLVLLDL
SHNHFRAIPPVVLRLPSLKNLNLEHNPLETLPVQITTIPRLNTLVLNSCR
LTFLPSELLQLVQRADDFTLQVSNNRFPRHYILELTRSFPGLRYKLVHVM
YE*
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spliced messenger RNA

>Ggra4486.t1 ID=Ggra4486.t1|Name=Ggra4486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000898_pilon:622750..623658+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTGCCAGCGACACGCGCCCGCGGCCACCGCGCGAGCCACTGGCTC
GCCGACGTCACCGGCCTGTCGGCGTGCAGTGCAGTTCGCCGCACAGCTGC
GTTCGCTGCCCGTCGCATTGCGCCCGCCGACGCCCCGCGCGCCTGCCGTC
GCCATgcagccaccgccgtcgcagctgccgctcgccgagccgcagcGCTT
CGACTGGACTAATCTGCCCGCCGACGTCAAGCAGCTCATCTTGGATGCCG
TCTCTTTGCCAAGCTTGTTGCACAAGTTGCAACAAGTCTTTCCGCGAGAC
GCGCCGCTGTGCGTGCATACGCGAATCGCCGCGTTGAGCGAGTTGTGGCG
AGCTTGGGTTGTGTCTCCCATAGATGTTAGAAATGTGCCTTCGTTCCGCA
CGCAGCATGCCCGCCGCGCTTGTTTGCCCACGCAGTTCTGTTTCTTGAGG
CGACTCGTGCTGGGCAGCTCTTCCTTTCGCCGTTTGCCCGTTGCCATTAC
CGAGTTTGTCGAACTGCGCGTGCTGCATCTCGATCACAACCACCTGCAAC
AGCTACCTGATTGCATCAGCGCTTGCTCCAGTCTCGTGCTGCTAGACCTT
TCACACAACCACTTTCGCGCTATTCCCCCTGTTGTACTCCGCCTACCGTC
ATTGAAAAACCTCAACCTAGAACACAATCCCCTCGAAACTCTTCCTGTAC
AGATAACTACCATCCCGAGGCTCAACACGCTCGTACTCAACAGCTGTCGC
CTCACATTTTTGCCATCAGAGCTGCTCCAACTCGTGCAACGCGCAGATGA
CTTCACATTACAGGTCTCCAACAACCGCTTCCCCCGCCACTACATACTCG
AGCTCACTCGATCCTTCCCGGGCCTCAGATACAAACTCGTGCACGTCATG
TACGAATAG
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protein sequence of Ggra4486.t1

>Ggra4486.t1 ID=Ggra4486.t1|Name=Ggra4486.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MRCQRHAPAATARATGSPTSPACRRAVQFAAQLRSLPVALRPPTPRAPAV
AMQPPPSQLPLAEPQRFDWTNLPADVKQLILDAVSLPSLLHKLQQVFPRD
APLCVHTRIAALSELWRAWVVSPIDVRNVPSFRTQHARRACLPTQFCFLR
RLVLGSSSFRRLPVAITEFVELRVLHLDHNHLQQLPDCISACSSLVLLDL
SHNHFRAIPPVVLRLPSLKNLNLEHNPLETLPVQITTIPRLNTLVLNSCR
LTFLPSELLQLVQRADDFTLQVSNNRFPRHYILELTRSFPGLRYKLVHVM
YE*
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mRNA from alignment at tig00000898_pilon:622750..623658+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4486.t1 ID=Ggra4486.t1|Name=Ggra4486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000898_pilon:622750..623658+ (Gracilaria gracilis GNS1m male)
ATGCGCTGCCAGCGACACGCGCCCGCGGCCACCGCGCGAGCCACTGGCTC
GCCGACGTCACCGGCCTGTCGGCGTGCAGTGCAGTTCGCCGCACAGCTGC
GTTCGCTGCCCGTCGCATTGCGCCCGCCGACGCCCCGCGCGCCTGCCGTC
GCCATgcagccaccgccgtcgcagctgccgctcgccgagccgcagcGCTT
CGACTGGACTAATCTGCCCGCCGACGTCAAGCAGCTCATCTTGGATGCCG
TCTCTTTGCCAAGCTTGTTGCACAAGTTGCAACAAGTCTTTCCGCGAGAC
GCGCCGCTGTGCGTGCATACGCGAATCGCCGCGTTGAGCGAGTTGTGGCG
AGCTTGGGTTGTGTCTCCCATAGATGTTAGAAATGTGCCTTCGTTCCGCA
CGCAGCATGCCCGCCGCGCTTGTTTGCCCACGCAGTTCTGTTTCTTGAGG
CGACTCGTGCTGGGCAGCTCTTCCTTTCGCCGTTTGCCCGTTGCCATTAC
CGAGTTTGTCGAACTGCGCGTGCTGCATCTCGATCACAACCACCTGCAAC
AGCTACCTGATTGCATCAGCGCTTGCTCCAGTCTCGTGCTGCTAGACCTT
TCACACAACCACTTTCGCGCTATTCCCCCTGTTGTACTCCGCCTACCGTC
ATTGAAAAACCTCAACCTAGAACACAATCCCCTCGAAACTCTTCCTGTAC
AGATAACTACCATCCCGAGGCTCAACACGCTCGTACTCAACAGCTGTCGC
CTCACATTTTTGCCATCAGAGCTGCTCCAACTCGTGCAACGCGCAGATGA
CTTCACATTACAGGTCTCCAACAACCGCTTCCCCCGCCACTACATACTCG
AGCTCACTCGATCCTTCCCGGGCCTCAGATACAAACTCGTGCACGTCATG
TACGAATAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:622750..623658+

>Ggra4486.t1 ID=Ggra4486.t1|Name=Ggra4486.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000898_pilon:622750..623658+ (Gracilaria gracilis GNS1m male)
ATGCGCTGCCAGCGACACGCGCCCGCGGCCACCGCGCGAGCCACTGGCTC
GCCGACGTCACCGGCCTGTCGGCGTGCAGTGCAGTTCGCCGCACAGCTGC
GTTCGCTGCCCGTCGCATTGCGCCCGCCGACGCCCCGCGCGCCTGCCGTC
GCCATgcagccaccgccgtcgcagctgccgctcgccgagccgcagcGCTT
CGACTGGACTAATCTGCCCGCCGACGTCAAGCAGCTCATCTTGGATGCCG
TCTCTTTGCCAAGCTTGTTGCACAAGTTGCAACAAGTCTTTCCGCGAGAC
GCGCCGCTGTGCGTGCATACGCGAATCGCCGCGTTGAGCGAGTTGTGGCG
AGCTTGGGTTGTGTCTCCCATAGATGTTAGAAATGTGCCTTCGTTCCGCA
CGCAGCATGCCCGCCGCGCTTGTTTGCCCACGCAGTTCTGTTTCTTGAGG
CGACTCGTGCTGGGCAGCTCTTCCTTTCGCCGTTTGCCCGTTGCCATTAC
CGAGTTTGTCGAACTGCGCGTGCTGCATCTCGATCACAACCACCTGCAAC
AGCTACCTGATTGCATCAGCGCTTGCTCCAGTCTCGTGCTGCTAGACCTT
TCACACAACCACTTTCGCGCTATTCCCCCTGTTGTACTCCGCCTACCGTC
ATTGAAAAACCTCAACCTAGAACACAATCCCCTCGAAACTCTTCCTGTAC
AGATAACTACCATCCCGAGGCTCAACACGCTCGTACTCAACAGCTGTCGC
CTCACATTTTTGCCATCAGAGCTGCTCCAACTCGTGCAACGCGCAGATGA
CTTCACATTACAGGTCTCCAACAACCGCTTCCCCCGCCACTACATACTCG
AGCTCACTCGATCCTTCCCGGGCCTCAGATACAAACTCGTGCACGTCATG
TACGAATAG
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