Ggra4481.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4481.t1
Unique Name	Ggra4481.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	459

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:615319..616695 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42099.EPrPV00000018402
PFAMs	Met_10
Max annot lvl	121069\|Pythiales
Evalue	4.86e-90
EggNOG OGs	COG2520@1\|root,KOG2078@2759\|Eukaryota,1MFXM@121069\|Pythiales
Description	TRNA (Guanine-N(1)-)-methyltransferase. Source PGD
COG category	A

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4481	Ggra4481	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 615319..616695 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4481.t1.start1	Ggra4481.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 615319..615321 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4481.t1.CDS1	Ggra4481.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 615319..616695 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4481.t1.exon1	Ggra4481.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 615319..616695 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4481.t1.stop1	Ggra4481.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 616693..616695 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4481.t1	Ggra4481.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 615319..616695 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:615319..616695+
coding sequence from alignment at tig00000898_pilon:615319..616695+

mRNA sequence

>Ggra4481.t1 ID=Ggra4481.t1|Name=Ggra4481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=459bp
MPGSVSRSKPEVTSMDRSLFSEKYKVYALRVPAKLCHGTRKAIKHHALAM
HRVLSVLKPLPDEQRKPAIMFLLLKYLAEHPPASSTSSPRGNAEASLVEA
SNEDVANKLRESQVPASISAPVQSFLKQVKSDDIFTKEVQIDYTHWSIEA
ILNKLMPEGITIPASFESIGHIAHLNLREEQLPFKNLIGQVMLDKLGPRV
KTIVNKLENTGGPYRTFAMEVLAGDDNLITSVKENGCTFRMDFSKVYWNS
RLETEHRKIIGTLKKDDVLADAFCGIGPFTVPAAKQKKCRMVYANDLNPS
SVEYLRENVKLNKVEEESIVTSCSCARTFLTRLVKEEHIPITIVVMNFPA
GAPEFLDVFRGLYDDWEGELPTMPLIHCYCFVKGVDDLQSARERTRTALC
GHLDDAIRILPDTDILVRDVRDVAPRKRQVCVTVRVPREVAGKRELVEEP
LQKKARVK*

spliced messenger RNA

>Ggra4481.t1 ID=Ggra4481.t1|Name=Ggra4481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000898_pilon:615319..616695+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGGCTCAGTCAGCCGGTCGAAGCCTGAGGTAACTTCCATGGATAG
AAGTCTTTTTTCAGAGAAATATAAGGTATACGCCCTCCGAGTGCCGGCCA
AACTATGTCATGGAACCCGAAAAGCAATCAAGCACCACGCTTTGGCAATG
CATCGCGTCTTGTCTGTTTTAAAACCACTACCTGATGAGCAGCGTAAGCC
TGCTATCATGTTTCTACTTCTGAAATATCTTGCAGAACATCCCCCTGCAA
GTAGCACAAGTTCTCCTCGAGGTAACGCGGAAGCATCTTTGGTTGAAGCT
TCGAACGAGGATGTCGCCAACAAATTGCGGGAGTCCCAAGTCCCTGCGTC
TATCTCGGCTCCCGTGCAATCATTCCTGAAGCAAGTTAAATCTGATGACA
TCTTCACAAAGGAGGTACAGATAGACTACACACATTGGTCTATTGAGGCC
ATATTGAACAAACTAATGCCCGAAGGCATCACAATACCAGCATCATTTGA
ATCAATTGGACATATCGCTCATCTCAATTTGCGGGAGGAGCAGTTACCGT
TTAAAAACCTCATAGGTCAAGTGATGTTGGACAAACTCGGCCCAAGAGTG
AAAACAATCGTGAACAAACTTGAAAACACTGGGGGGCCGTATCGCACCTT
TGCTATGGAGGTTCTAGCTGGCGATGACAATTTGATCACGTCCGTGAAGG
AGAATGGGTGCACGTTTAGAATGGACTTCTCGAAGGTGTACTGGAACTCC
AGACTAGAAACAGAGCATCGAAAGATTATCGGTACCTTGAAGAAAGATGA
CGTTCTTGCCGATGCGTTTTGTGGCATCGGACCGTTCACAGTACCTGCGG
CCAAACAGAAAAAGTGCAGAATGGTGTACGCCAATGATCTTAATCCATCA
TCTGTAGAATATCTGAGGGAGAACGTGAAACTAAATAAGGTGGAAGAAGA
ATCTATCGTGACGTCTTGTTCATGTGCGAGGACGTTCTTAACGCGCTTAG
TGAAAGAGGAACACATACCTATCACCATAGTCGTTATGAACTTTCCTGCA
GGAGCGCCGGAGTTTTTAGACGTGTTCAGAGGTTTGTATGACGATTGGGA
GGGTGAGTTGCCGACAATGCCGCTCATTCATTGCTATTGTTTCGTGAAAG
GTGTGGACGACTTACAAAGTGCTCGGGAGAGAACAAGAACGGCTTTGTGC
GGGCATCTGGACGACGCGATACGAATTTTGCCAGACACAGACATACTCGT
AAGAGATGTTAGAGATGTTGCGCCACGGAAGCGACAGGTTTGCGTGACGG
TACGCGTGCCTAGAGAAGTTGCTGGCAAACGAGAACTTGTGGAAGAACCT
TTACAAAAGAAAGCGCGGGTAAAATGA

protein sequence of Ggra4481.t1

>Ggra4481.t1 ID=Ggra4481.t1|Name=Ggra4481.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=459bp
MPGSVSRSKPEVTSMDRSLFSEKYKVYALRVPAKLCHGTRKAIKHHALAM
HRVLSVLKPLPDEQRKPAIMFLLLKYLAEHPPASSTSSPRGNAEASLVEA
SNEDVANKLRESQVPASISAPVQSFLKQVKSDDIFTKEVQIDYTHWSIEA
ILNKLMPEGITIPASFESIGHIAHLNLREEQLPFKNLIGQVMLDKLGPRV
KTIVNKLENTGGPYRTFAMEVLAGDDNLITSVKENGCTFRMDFSKVYWNS
RLETEHRKIIGTLKKDDVLADAFCGIGPFTVPAAKQKKCRMVYANDLNPS
SVEYLRENVKLNKVEEESIVTSCSCARTFLTRLVKEEHIPITIVVMNFPA
GAPEFLDVFRGLYDDWEGELPTMPLIHCYCFVKGVDDLQSARERTRTALC
GHLDDAIRILPDTDILVRDVRDVAPRKRQVCVTVRVPREVAGKRELVEEP
LQKKARVK*

mRNA from alignment at tig00000898_pilon:615319..616695+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4481.t1 ID=Ggra4481.t1|Name=Ggra4481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000898_pilon:615319..616695+ (Gracilaria gracilis GNS1m male)
ATGCCCGGCTCAGTCAGCCGGTCGAAGCCTGAGGTAACTTCCATGGATAG
AAGTCTTTTTTCAGAGAAATATAAGGTATACGCCCTCCGAGTGCCGGCCA
AACTATGTCATGGAACCCGAAAAGCAATCAAGCACCACGCTTTGGCAATG
CATCGCGTCTTGTCTGTTTTAAAACCACTACCTGATGAGCAGCGTAAGCC
TGCTATCATGTTTCTACTTCTGAAATATCTTGCAGAACATCCCCCTGCAA
GTAGCACAAGTTCTCCTCGAGGTAACGCGGAAGCATCTTTGGTTGAAGCT
TCGAACGAGGATGTCGCCAACAAATTGCGGGAGTCCCAAGTCCCTGCGTC
TATCTCGGCTCCCGTGCAATCATTCCTGAAGCAAGTTAAATCTGATGACA
TCTTCACAAAGGAGGTACAGATAGACTACACACATTGGTCTATTGAGGCC
ATATTGAACAAACTAATGCCCGAAGGCATCACAATACCAGCATCATTTGA
ATCAATTGGACATATCGCTCATCTCAATTTGCGGGAGGAGCAGTTACCGT
TTAAAAACCTCATAGGTCAAGTGATGTTGGACAAACTCGGCCCAAGAGTG
AAAACAATCGTGAACAAACTTGAAAACACTGGGGGGCCGTATCGCACCTT
TGCTATGGAGGTTCTAGCTGGCGATGACAATTTGATCACGTCCGTGAAGG
AGAATGGGTGCACGTTTAGAATGGACTTCTCGAAGGTGTACTGGAACTCC
AGACTAGAAACAGAGCATCGAAAGATTATCGGTACCTTGAAGAAAGATGA
CGTTCTTGCCGATGCGTTTTGTGGCATCGGACCGTTCACAGTACCTGCGG
CCAAACAGAAAAAGTGCAGAATGGTGTACGCCAATGATCTTAATCCATCA
TCTGTAGAATATCTGAGGGAGAACGTGAAACTAAATAAGGTGGAAGAAGA
ATCTATCGTGACGTCTTGTTCATGTGCGAGGACGTTCTTAACGCGCTTAG
TGAAAGAGGAACACATACCTATCACCATAGTCGTTATGAACTTTCCTGCA
GGAGCGCCGGAGTTTTTAGACGTGTTCAGAGGTTTGTATGACGATTGGGA
GGGTGAGTTGCCGACAATGCCGCTCATTCATTGCTATTGTTTCGTGAAAG
GTGTGGACGACTTACAAAGTGCTCGGGAGAGAACAAGAACGGCTTTGTGC
GGGCATCTGGACGACGCGATACGAATTTTGCCAGACACAGACATACTCGT
AAGAGATGTTAGAGATGTTGCGCCACGGAAGCGACAGGTTTGCGTGACGG
TACGCGTGCCTAGAGAAGTTGCTGGCAAACGAGAACTTGTGGAAGAACCT
TTACAAAAGAAAGCGCGGGTAAAATGA

Coding sequence (CDS) from alignment at tig00000898_pilon:615319..616695+

>Ggra4481.t1 ID=Ggra4481.t1|Name=Ggra4481.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1377bp|location=Sequence derived from alignment at tig00000898_pilon:615319..616695+ (Gracilaria gracilis GNS1m male)
ATGCCCGGCTCAGTCAGCCGGTCGAAGCCTGAGGTAACTTCCATGGATAG
AAGTCTTTTTTCAGAGAAATATAAGGTATACGCCCTCCGAGTGCCGGCCA
AACTATGTCATGGAACCCGAAAAGCAATCAAGCACCACGCTTTGGCAATG
CATCGCGTCTTGTCTGTTTTAAAACCACTACCTGATGAGCAGCGTAAGCC
TGCTATCATGTTTCTACTTCTGAAATATCTTGCAGAACATCCCCCTGCAA
GTAGCACAAGTTCTCCTCGAGGTAACGCGGAAGCATCTTTGGTTGAAGCT
TCGAACGAGGATGTCGCCAACAAATTGCGGGAGTCCCAAGTCCCTGCGTC
TATCTCGGCTCCCGTGCAATCATTCCTGAAGCAAGTTAAATCTGATGACA
TCTTCACAAAGGAGGTACAGATAGACTACACACATTGGTCTATTGAGGCC
ATATTGAACAAACTAATGCCCGAAGGCATCACAATACCAGCATCATTTGA
ATCAATTGGACATATCGCTCATCTCAATTTGCGGGAGGAGCAGTTACCGT
TTAAAAACCTCATAGGTCAAGTGATGTTGGACAAACTCGGCCCAAGAGTG
AAAACAATCGTGAACAAACTTGAAAACACTGGGGGGCCGTATCGCACCTT
TGCTATGGAGGTTCTAGCTGGCGATGACAATTTGATCACGTCCGTGAAGG
AGAATGGGTGCACGTTTAGAATGGACTTCTCGAAGGTGTACTGGAACTCC
AGACTAGAAACAGAGCATCGAAAGATTATCGGTACCTTGAAGAAAGATGA
CGTTCTTGCCGATGCGTTTTGTGGCATCGGACCGTTCACAGTACCTGCGG
CCAAACAGAAAAAGTGCAGAATGGTGTACGCCAATGATCTTAATCCATCA
TCTGTAGAATATCTGAGGGAGAACGTGAAACTAAATAAGGTGGAAGAAGA
ATCTATCGTGACGTCTTGTTCATGTGCGAGGACGTTCTTAACGCGCTTAG
TGAAAGAGGAACACATACCTATCACCATAGTCGTTATGAACTTTCCTGCA
GGAGCGCCGGAGTTTTTAGACGTGTTCAGAGGTTTGTATGACGATTGGGA
GGGTGAGTTGCCGACAATGCCGCTCATTCATTGCTATTGTTTCGTGAAAG
GTGTGGACGACTTACAAAGTGCTCGGGAGAGAACAAGAACGGCTTTGTGC
GGGCATCTGGACGACGCGATACGAATTTTGCCAGACACAGACATACTCGT
AAGAGATGTTAGAGATGTTGCGCCACGGAAGCGACAGGTTTGCGTGACGG
TACGCGTGCCTAGAGAAGTTGCTGGCAAACGAGAACTTGTGGAAGAACCT
TTACAAAAGAAAGCGCGGGTAAAATGA