Ggra4476.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4476.t1
Unique NameGgra4476.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:605022..605922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4476Ggra4476Gracilaria gracilis GNS1m malegenetig00000898_pilon 605022..605922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4476.t1Ggra4476.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 605022..605922 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4476.t1.stop1Ggra4476.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 605022..605024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4476.t1.CDS1Ggra4476.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 605022..605725 -
Ggra4476.t1.CDS2Ggra4476.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 605823..605922 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4476.t1.exon1Ggra4476.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 605022..605725 -
Ggra4476.t1.exon2Ggra4476.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 605823..605922 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4476.t1.intron1Ggra4476.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 605726..605822 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4476.t1.start1Ggra4476.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 605920..605922 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4476.t1 ID=Ggra4476.t1|Name=Ggra4476.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MTQQSGGRATIKGAEARGGRRMKRIDIGLGGGTASYGKPDVAEDTDRRRR
SPLIPMTENLLYHVANAARDAENAWNTASSSGAQAVQSIFTSLQTLQLQA
SACAPAAAANRVLSTQRALEADIHQLKTTARRLSSIVNGLKRWQEELDTD
SSSALLRDWFDRLLSAFEKDLNTKRMVLDSIIDEGVFLLPVVEWRRFIAL
WSEQPNRLGTCGEAVAAIATAEQVMQDLNTNHAQLQQRRQSSASSNSTPT
MSPAMLSLKKRLAKTKT*
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spliced messenger RNA

>Ggra4476.t1 ID=Ggra4476.t1|Name=Ggra4476.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000898_pilon:605022..605922- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCAACAGTCGGGCGGCAGAGCGACAATCAAAGGCGCGGAAGCTCG
CGGTGGGCGAAGGATGAAGCGCATCGACATTGGGCTCGGAGGCGGAACTG
CTTCATACGGCAAACCGGATGTCGCTGAAGACACCGACCGGCGAAGAAGA
TCTCCTTTGATTCCGATGACTGAAAACTTGCTGTATCACGTTGCAAACGC
TGCGAGAGACGCGGAGAACGCGTGGAACACCGCGTCCTCCTCGGGCGCGC
AAGCTGTGCAGTCCATTTTCACATCGCTGCAAACGTTGCAGTTGCAGGCT
AGTGCGTGTGCGCCGGCGGCTGCTGCAAATCGCGTGCTGTCGACGCAGCG
TGCATTGGAGGCTGACATTCATCAATTGAAGACGACTGCTCGTCGACTCT
CTTCAATCGTAAATGGGCTGAAACGCTGGCAAGAGGAACTTGACACAGAT
TCATCATCTGCTCTGTTGAGAGACTGGTTCGATCGACTCTTGAGCGCTTT
TGAGAAGGACTTGAACACCAAGCGAATGGTGCTTGACTCCATTATTGACG
AAGGCGTTTTTTTGCTGCCCGTAGTGGAGTGGAGACGTTTTATTGCGTTG
TGGAGTGAACAACCGAATCGACTGGGTACTTGTGGAGAAGCTGTGGCTGC
AATTGCCACCGCGGAACAAGTTATGCAAGATTTAAACACAAACCACGCAC
AGCTTCAACAGCGGCGTCAATCTTCCGCTAGCTCAAACTCTACTCCTACA
ATGTCACCAGCAATGCTCTCCTTAAAGAAACGTCTTGCGAAAACAAAAAC
ATAG
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protein sequence of Ggra4476.t1

>Ggra4476.t1 ID=Ggra4476.t1|Name=Ggra4476.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MTQQSGGRATIKGAEARGGRRMKRIDIGLGGGTASYGKPDVAEDTDRRRR
SPLIPMTENLLYHVANAARDAENAWNTASSSGAQAVQSIFTSLQTLQLQA
SACAPAAAANRVLSTQRALEADIHQLKTTARRLSSIVNGLKRWQEELDTD
SSSALLRDWFDRLLSAFEKDLNTKRMVLDSIIDEGVFLLPVVEWRRFIAL
WSEQPNRLGTCGEAVAAIATAEQVMQDLNTNHAQLQQRRQSSASSNSTPT
MSPAMLSLKKRLAKTKT*
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mRNA from alignment at tig00000898_pilon:605022..605922-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4476.t1 ID=Ggra4476.t1|Name=Ggra4476.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=901bp|location=Sequence derived from alignment at tig00000898_pilon:605022..605922- (Gracilaria gracilis GNS1m male)
ATGACGCAACAGTCGGGCGGCAGAGCGACAATCAAAGGCGCGGAAGCTCG
CGGTGGGCGAAGGATGAAGCGCATCGACATTGGGCTCGGAGGCGGAACTG
GTGAGCAGCACCTGTTCGTTCCGAGGAGGTGCGCAAATATCTCGCAGCGT
CCAACAAAAATCCGCCACCTGTCACCGGTGTCCTCGCCCCGTCGAAGCTT
CATACGGCAAACCGGATGTCGCTGAAGACACCGACCGGCGAAGAAGATCT
CCTTTGATTCCGATGACTGAAAACTTGCTGTATCACGTTGCAAACGCTGC
GAGAGACGCGGAGAACGCGTGGAACACCGCGTCCTCCTCGGGCGCGCAAG
CTGTGCAGTCCATTTTCACATCGCTGCAAACGTTGCAGTTGCAGGCTAGT
GCGTGTGCGCCGGCGGCTGCTGCAAATCGCGTGCTGTCGACGCAGCGTGC
ATTGGAGGCTGACATTCATCAATTGAAGACGACTGCTCGTCGACTCTCTT
CAATCGTAAATGGGCTGAAACGCTGGCAAGAGGAACTTGACACAGATTCA
TCATCTGCTCTGTTGAGAGACTGGTTCGATCGACTCTTGAGCGCTTTTGA
GAAGGACTTGAACACCAAGCGAATGGTGCTTGACTCCATTATTGACGAAG
GCGTTTTTTTGCTGCCCGTAGTGGAGTGGAGACGTTTTATTGCGTTGTGG
AGTGAACAACCGAATCGACTGGGTACTTGTGGAGAAGCTGTGGCTGCAAT
TGCCACCGCGGAACAAGTTATGCAAGATTTAAACACAAACCACGCACAGC
TTCAACAGCGGCGTCAATCTTCCGCTAGCTCAAACTCTACTCCTACAATG
TCACCAGCAATGCTCTCCTTAAAGAAACGTCTTGCGAAAACAAAAACATA
G
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Coding sequence (CDS) from alignment at tig00000898_pilon:605022..605922-

>Ggra4476.t1 ID=Ggra4476.t1|Name=Ggra4476.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000898_pilon:605022..605922- (Gracilaria gracilis GNS1m male)
ATGACGCAACAGTCGGGCGGCAGAGCGACAATCAAAGGCGCGGAAGCTCG
CGGTGGGCGAAGGATGAAGCGCATCGACATTGGGCTCGGAGGCGGAACTG
CTTCATACGGCAAACCGGATGTCGCTGAAGACACCGACCGGCGAAGAAGA
TCTCCTTTGATTCCGATGACTGAAAACTTGCTGTATCACGTTGCAAACGC
TGCGAGAGACGCGGAGAACGCGTGGAACACCGCGTCCTCCTCGGGCGCGC
AAGCTGTGCAGTCCATTTTCACATCGCTGCAAACGTTGCAGTTGCAGGCT
AGTGCGTGTGCGCCGGCGGCTGCTGCAAATCGCGTGCTGTCGACGCAGCG
TGCATTGGAGGCTGACATTCATCAATTGAAGACGACTGCTCGTCGACTCT
CTTCAATCGTAAATGGGCTGAAACGCTGGCAAGAGGAACTTGACACAGAT
TCATCATCTGCTCTGTTGAGAGACTGGTTCGATCGACTCTTGAGCGCTTT
TGAGAAGGACTTGAACACCAAGCGAATGGTGCTTGACTCCATTATTGACG
AAGGCGTTTTTTTGCTGCCCGTAGTGGAGTGGAGACGTTTTATTGCGTTG
TGGAGTGAACAACCGAATCGACTGGGTACTTGTGGAGAAGCTGTGGCTGC
AATTGCCACCGCGGAACAAGTTATGCAAGATTTAAACACAAACCACGCAC
AGCTTCAACAGCGGCGTCAATCTTCCGCTAGCTCAAACTCTACTCCTACA
ATGTCACCAGCAATGCTCTCCTTAAAGAAACGTCTTGCGAAAACAAAAAC
ATAG
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