Ggra4475.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4475.t2
Unique NameGgra4475.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length81
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:604254..604880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705864.1
Preferred nameTIMM10
PFAMszf-Tim10_DDP
Max annot lvl2759|Eukaryota
KEGG koko:K17778,ko:K17781,ko:K17793
KEGG TC3.A.8.1
GOsGO:0000003,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008289,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0040008,GO:0040014,GO:0042719,GO:0042721,GO:0042802,GO:0042803,GO:0042886,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048638,GO:0050789,GO:0050793,GO:0050877,GO:0050954,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1990351,GO:1990542
Evalue3.22e-25
EggNOG OGsKOG3480@1|root,KOG3480@2759|Eukaryota
Descriptionprotein import into mitochondrial inner membrane
COG categoryO
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4475Ggra4475Gracilaria gracilis GNS1m malegenetig00000898_pilon 604254..604880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4475.t2Ggra4475.t2Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 604254..604880 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4475.t2.start1Ggra4475.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 604254..604256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4475.t2.CDS1Ggra4475.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 604254..604330 +
Ggra4475.t2.CDS2Ggra4475.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 604405..604472 +
Ggra4475.t2.CDS3Ggra4475.t2.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 604562..604573 +
Ggra4475.t2.CDS4Ggra4475.t2.CDS4Gracilaria gracilis GNS1m maleCDStig00000898_pilon 604696..604721 +
Ggra4475.t2.CDS5Ggra4475.t2.CDS5Gracilaria gracilis GNS1m maleCDStig00000898_pilon 604821..604880 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4475.t2.exon1Ggra4475.t2.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 604254..604330 +
Ggra4475.t2.exon2Ggra4475.t2.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 604405..604472 +
Ggra4475.t2.exon3Ggra4475.t2.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 604562..604573 +
Ggra4475.t2.exon4Ggra4475.t2.exon4Gracilaria gracilis GNS1m maleexontig00000898_pilon 604696..604721 +
Ggra4475.t2.exon5Ggra4475.t2.exon5Gracilaria gracilis GNS1m maleexontig00000898_pilon 604821..604880 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4475.t2.intron1Ggra4475.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 604331..604404 +
Ggra4475.t2.intron2Ggra4475.t2.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 604473..604561 +
Ggra4475.t2.intron3Ggra4475.t2.intron3Gracilaria gracilis GNS1m maleintrontig00000898_pilon 604574..604695 +
Ggra4475.t2.intron4Ggra4475.t2.intron4Gracilaria gracilis GNS1m maleintrontig00000898_pilon 604722..604820 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4475.t2.stop1Ggra4475.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 604878..604880 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4475.t2 ID=Ggra4475.t2|Name=Ggra4475.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=81bp
MNVPQQQGNLDAMKTEMIFVADLFNRMSETCFKKCVPRFHDGDLNTGELV
RDNRCVGKYVEATNKVGEVMQQLQQGQAPQ*
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spliced messenger RNA

>Ggra4475.t2 ID=Ggra4475.t2|Name=Ggra4475.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=243bp|location=Sequence derived from alignment at tig00000898_pilon:604254..604880+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTGCCTCAACAACAGGGCAACCTGGACGCCATGAAGACAGAGAT
GATCTTTGTGGCAGACCTTTTCAATCGAATGAGTGAGACTTGCTTCAAGA
AATGCGTGCCTAGGTTTCATGACGGCGACTTGAATACTGGCGAACTCGTA
CGTGATAATCGTTGCGTGGGAAAATATGTGGAAGCTACGAACAAAGTTGG
TGAGGTAATGCAGCAATTACAGCAGGGCCAAGCACCTCAGTAA
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protein sequence of Ggra4475.t2

>Ggra4475.t2 ID=Ggra4475.t2|Name=Ggra4475.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=81bp
MNVPQQQGNLDAMKTEMIFVADLFNRMSETCFKKCVPRFHDGDLNTGELV
RDNRCVGKYVEATNKVGEVMQQLQQGQAPQ*
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mRNA from alignment at tig00000898_pilon:604254..604880+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4475.t2 ID=Ggra4475.t2|Name=Ggra4475.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000898_pilon:604254..604880+ (Gracilaria gracilis GNS1m male)
ATGAACGTGCCTCAACAACAGGGCAACCTGGACGCCATGAAGACAGAGAT
GATCTTTGTGGCAGACCTTTTCAATCGGTACGGAATTCGTATATGTGGCC
GAGGCCATGTAGAAATTCGCTTTCAGAAGTCTAACCTTTAAAGAACAACA
GAATGAGTGAGACTTGCTTCAAGAAATGCGTGCCTAGGTTTCATGACGGC
GACTTGAATACTGGCGAACGTAAGTGATTCACTCAAAAGTGTTAGACAGA
ACCCTCTTGTACACAGTCGTTGAACTAACCAGCTTCATGTTTATCATGAC
TATTGTAGTCGTACGTGATAGTGATAATTCAGAGCATGAACGAACATGGA
AATGAGTTGCAAGATGATTAACAATGAAGCGTATATAACCTTTCTTTCTT
CATTCTTCATTCGTATCTTTATCGAAACATAGGTTTGTGCAGATCGTTGC
GTGGGAAAATATGTGGAAGTAAGTAACGGCCGTTGAAACTCAGCAAGACA
TTGATTGACAAGGACATGTTCTTGAAGTGCTAACCAATAAAACTATGTGA
CTCAAACTCGGGATCAGGCTACGAACAAAGTTGGTGAGGTAATGCAGCAA
TTACAGCAGGGCCAAGCACCTCAGTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:604254..604880+

>Ggra4475.t2 ID=Ggra4475.t2|Name=Ggra4475.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=243bp|location=Sequence derived from alignment at tig00000898_pilon:604254..604880+ (Gracilaria gracilis GNS1m male)
ATGAACGTGCCTCAACAACAGGGCAACCTGGACGCCATGAAGACAGAGAT
GATCTTTGTGGCAGACCTTTTCAATCGAATGAGTGAGACTTGCTTCAAGA
AATGCGTGCCTAGGTTTCATGACGGCGACTTGAATACTGGCGAACTCGTA
CGTGATAATCGTTGCGTGGGAAAATATGTGGAAGCTACGAACAAAGTTGG
TGAGGTAATGCAGCAATTACAGCAGGGCCAAGCACCTCAGTAA
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