Ggra4473.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4473.t1
Unique Name	Ggra4473.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:600235..601428 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0QZZ9
PFAMs	HA
Max annot lvl	2836\|Bacillariophyta
Evalue	3.34e-42
EggNOG OGs	2E1M9@1\|root,2S8XU@2759\|Eukaryota,2XH87@2836\|Bacillariophyta
Description	Helicase associated domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4473	Ggra4473	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 600235..601428 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4473.t1.start1	Ggra4473.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 600235..600237 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4473.t1.CDS1	Ggra4473.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 600235..601428 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4473.t1.exon1	Ggra4473.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 600235..601428 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4473.t1.stop1	Ggra4473.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 601426..601428 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4473.t1	Ggra4473.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 600235..601428 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:600235..601428+
coding sequence from alignment at tig00000898_pilon:600235..601428+

mRNA sequence

>Ggra4473.t1 ID=Ggra4473.t1|Name=Ggra4473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MDADADGSVLWARRYAELAQWHSLHGNCNVPKAEGKLGRWVVRQRELHKK
GKLEMHRKTQLDRLAFVWNTNEAAWENRYALLLRYYHHNGHCCVPISDPH
LGMWVAKMRANRRKDKLPLHRVRKLDAIGFIWNTAEADWMDKFSKLLHFR
AVHGHSCVPFNEGELGWWVNTQRQSKRKGKLSQQRERLLNEAAFVWNPQQ
FLAERRRRAARARAAAANAPLPSKRSLSQLSAPSSQCVTPQQPAPKRRKP
PQSPLIQKPLFHPMQSSPYADVASFQYSRSHHTPVSILNAPIAATPVAAP
ASCMLPSADRTDVQSIASLLSPSHESPCIPKLVLPSRAFDSANSAADTVT
AFAHSELPSFHGASTALRSVGTRRSPTTSFVLPPISSLKGLSNPTPF*

spliced messenger RNA

>Ggra4473.t1 ID=Ggra4473.t1|Name=Ggra4473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000898_pilon:600235..601428+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCGACGCCGATGGTTCCGTGTTGTGGGCGCGCCGCTACGCCGA
GCTCGCGCAGTGGCACTCCTTGCACGGCAATTGTAACGTGCCCAAGGCGG
AGGGCAAGCTCGGGCGCTGGGTGGTGCGTCAGCGCGAGCTGCACAAGAAG
GGAAAGCTCGAGATGCACCGCAAGACCCAATTGGACCGTCTCGCCTTTGT
GTGGAACACCAACGAGGCCGCCTGGGAGAATCGTTACGCACTCTTGTTGC
GCTACTATCATCACAATGGCCACTGCTGCGTGCCCATTTCTGACCCGCAC
CTGGGAATGTGGGTCGCAAAGATGCGCGCCAACCGCAGAAAGGATAAGCT
CCCGCTGCATCGCGTGCGAAAGCTCGACGCCATTGGATTCATCTGGAATA
CCGCCGAGGCTGACTGGATGGACAAGTTTAGCAAGCTGCTTCATTTCCGC
GCCGTGCACGGCCATTCCTGTGTCCCGTTTAACGAGGGTGAGCTTGGCTG
GTGGGTAAACACACAGCGTCAGAGCAAGCGCAAGGGAAAGCTGTCGCAGC
AACGCGAACGTCTGCTCAATGAAGCCGCCTTTGTATGGAACCCGCAGCAG
TTTCTCGCTGAGAGgcgtcgtcgcgccgctcgcgctcgcgccgccgctGC
CAATGCGCCCTTGCCGAGTAAGAGGTCGCTGTCGCAACTGTCTGCACCGT
CTTCTCAATGCGTCACCCCGCAGCAGCCAGCGCCCAAGCGCCGTAAGCCG
CCGCAATCACCCTTGATTCAGAAGCCGCTGTTTCATCCCATGCAGTCGTC
GCCGTATGCTGATGTTGCTTCGTTTCAGTACTCGCGTTCGCATCATACGC
CCGTCAGCATTCTCAATGCGCCTATtgctgctacgcctgtggctgctcct
gcttcatgcatgctgcCTTCCGCCGATAGGACCGACGTGCAATCCATTGC
CTCGTTGCTGTCGCCTTCGCATGAATCTCCATGCATTCCCAAGCTCGTGT
TGCCGTCACGTGCTTTCGACTCTGCCAATTCTGCCGCTGATACCGTCACC
GCTTTTGCTCATTCCGAACTACCGTCGTTCCATGGTGCGAGTACTGCTCT
CAGGTCGGTGGGTACCAGAAGGAGTCCGACCACGTCATTTGTGCTACCGC
CCATTTCCAGTCTCAAGGGTTTGAGCAATCCTACTCCATTTTAG

protein sequence of Ggra4473.t1

>Ggra4473.t1 ID=Ggra4473.t1|Name=Ggra4473.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MDADADGSVLWARRYAELAQWHSLHGNCNVPKAEGKLGRWVVRQRELHKK
GKLEMHRKTQLDRLAFVWNTNEAAWENRYALLLRYYHHNGHCCVPISDPH
LGMWVAKMRANRRKDKLPLHRVRKLDAIGFIWNTAEADWMDKFSKLLHFR
AVHGHSCVPFNEGELGWWVNTQRQSKRKGKLSQQRERLLNEAAFVWNPQQ
FLAERRRRAARARAAAANAPLPSKRSLSQLSAPSSQCVTPQQPAPKRRKP
PQSPLIQKPLFHPMQSSPYADVASFQYSRSHHTPVSILNAPIAATPVAAP
ASCMLPSADRTDVQSIASLLSPSHESPCIPKLVLPSRAFDSANSAADTVT
AFAHSELPSFHGASTALRSVGTRRSPTTSFVLPPISSLKGLSNPTPF*

mRNA from alignment at tig00000898_pilon:600235..601428+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4473.t1 ID=Ggra4473.t1|Name=Ggra4473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000898_pilon:600235..601428+ (Gracilaria gracilis GNS1m male)
ATGGACGCCGACGCCGATGGTTCCGTGTTGTGGGCGCGCCGCTACGCCGA
GCTCGCGCAGTGGCACTCCTTGCACGGCAATTGTAACGTGCCCAAGGCGG
AGGGCAAGCTCGGGCGCTGGGTGGTGCGTCAGCGCGAGCTGCACAAGAAG
GGAAAGCTCGAGATGCACCGCAAGACCCAATTGGACCGTCTCGCCTTTGT
GTGGAACACCAACGAGGCCGCCTGGGAGAATCGTTACGCACTCTTGTTGC
GCTACTATCATCACAATGGCCACTGCTGCGTGCCCATTTCTGACCCGCAC
CTGGGAATGTGGGTCGCAAAGATGCGCGCCAACCGCAGAAAGGATAAGCT
CCCGCTGCATCGCGTGCGAAAGCTCGACGCCATTGGATTCATCTGGAATA
CCGCCGAGGCTGACTGGATGGACAAGTTTAGCAAGCTGCTTCATTTCCGC
GCCGTGCACGGCCATTCCTGTGTCCCGTTTAACGAGGGTGAGCTTGGCTG
GTGGGTAAACACACAGCGTCAGAGCAAGCGCAAGGGAAAGCTGTCGCAGC
AACGCGAACGTCTGCTCAATGAAGCCGCCTTTGTATGGAACCCGCAGCAG
TTTCTCGCTGAGAGgcgtcgtcgcgccgctcgcgctcgcgccgccgctGC
CAATGCGCCCTTGCCGAGTAAGAGGTCGCTGTCGCAACTGTCTGCACCGT
CTTCTCAATGCGTCACCCCGCAGCAGCCAGCGCCCAAGCGCCGTAAGCCG
CCGCAATCACCCTTGATTCAGAAGCCGCTGTTTCATCCCATGCAGTCGTC
GCCGTATGCTGATGTTGCTTCGTTTCAGTACTCGCGTTCGCATCATACGC
CCGTCAGCATTCTCAATGCGCCTATtgctgctacgcctgtggctgctcct
gcttcatgcatgctgcCTTCCGCCGATAGGACCGACGTGCAATCCATTGC
CTCGTTGCTGTCGCCTTCGCATGAATCTCCATGCATTCCCAAGCTCGTGT
TGCCGTCACGTGCTTTCGACTCTGCCAATTCTGCCGCTGATACCGTCACC
GCTTTTGCTCATTCCGAACTACCGTCGTTCCATGGTGCGAGTACTGCTCT
CAGGTCGGTGGGTACCAGAAGGAGTCCGACCACGTCATTTGTGCTACCGC
CCATTTCCAGTCTCAAGGGTTTGAGCAATCCTACTCCATTTTAG

Coding sequence (CDS) from alignment at tig00000898_pilon:600235..601428+

>Ggra4473.t1 ID=Ggra4473.t1|Name=Ggra4473.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000898_pilon:600235..601428+ (Gracilaria gracilis GNS1m male)
ATGGACGCCGACGCCGATGGTTCCGTGTTGTGGGCGCGCCGCTACGCCGA
GCTCGCGCAGTGGCACTCCTTGCACGGCAATTGTAACGTGCCCAAGGCGG
AGGGCAAGCTCGGGCGCTGGGTGGTGCGTCAGCGCGAGCTGCACAAGAAG
GGAAAGCTCGAGATGCACCGCAAGACCCAATTGGACCGTCTCGCCTTTGT
GTGGAACACCAACGAGGCCGCCTGGGAGAATCGTTACGCACTCTTGTTGC
GCTACTATCATCACAATGGCCACTGCTGCGTGCCCATTTCTGACCCGCAC
CTGGGAATGTGGGTCGCAAAGATGCGCGCCAACCGCAGAAAGGATAAGCT
CCCGCTGCATCGCGTGCGAAAGCTCGACGCCATTGGATTCATCTGGAATA
CCGCCGAGGCTGACTGGATGGACAAGTTTAGCAAGCTGCTTCATTTCCGC
GCCGTGCACGGCCATTCCTGTGTCCCGTTTAACGAGGGTGAGCTTGGCTG
GTGGGTAAACACACAGCGTCAGAGCAAGCGCAAGGGAAAGCTGTCGCAGC
AACGCGAACGTCTGCTCAATGAAGCCGCCTTTGTATGGAACCCGCAGCAG
TTTCTCGCTGAGAGgcgtcgtcgcgccgctcgcgctcgcgccgccgctGC
CAATGCGCCCTTGCCGAGTAAGAGGTCGCTGTCGCAACTGTCTGCACCGT
CTTCTCAATGCGTCACCCCGCAGCAGCCAGCGCCCAAGCGCCGTAAGCCG
CCGCAATCACCCTTGATTCAGAAGCCGCTGTTTCATCCCATGCAGTCGTC
GCCGTATGCTGATGTTGCTTCGTTTCAGTACTCGCGTTCGCATCATACGC
CCGTCAGCATTCTCAATGCGCCTATtgctgctacgcctgtggctgctcct
gcttcatgcatgctgcCTTCCGCCGATAGGACCGACGTGCAATCCATTGC
CTCGTTGCTGTCGCCTTCGCATGAATCTCCATGCATTCCCAAGCTCGTGT
TGCCGTCACGTGCTTTCGACTCTGCCAATTCTGCCGCTGATACCGTCACC
GCTTTTGCTCATTCCGAACTACCGTCGTTCCATGGTGCGAGTACTGCTCT
CAGGTCGGTGGGTACCAGAAGGAGTCCGACCACGTCATTTGTGCTACCGC
CCATTTCCAGTCTCAAGGGTTTGAGCAATCCTACTCCATTTTAG