Ggra4472.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4472.t1
Unique NameGgra4472.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length675
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:596847..599607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_03924T0
PFAMsABC1
Max annot lvl4751|Fungi
KEGG koko:K08869
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0019866,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0048878,GO:0050801,GO:0055081,GO:0055088,GO:0055091,GO:0065007,GO:0065008,GO:0071840,GO:0098573
Evalue9.98e-86
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota,38DDN@33154|Opisthokonta,3NVI9@4751|Fungi,1GRUZ@112252|Fungi incertae sedis
DescriptionABC1 family
COG categoryP
BRITEko00000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4472Ggra4472Gracilaria gracilis GNS1m malegenetig00000898_pilon 596847..599607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4472.t1Ggra4472.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 596847..599607 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4472.t1.stop1Ggra4472.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 596847..596849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4472.t1.CDS1Ggra4472.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 596847..596963 -
Ggra4472.t1.CDS2Ggra4472.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 597063..597335 -
Ggra4472.t1.CDS3Ggra4472.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 597973..599607 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4472.t1.exon1Ggra4472.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 596847..596963 -
Ggra4472.t1.exon2Ggra4472.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 597063..597335 -
Ggra4472.t1.exon3Ggra4472.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 597973..599607 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4472.t1.intron1Ggra4472.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 596964..597062 -
Ggra4472.t1.intron2Ggra4472.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 597336..597972 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4472.t1.start1Ggra4472.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 599605..599607 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4472.t1 ID=Ggra4472.t1|Name=Ggra4472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp
MRAPLWRRVFYAGALCSTSVAGALAVERAPSAVDARSPVAPLASGVIALV
RFSRSLYAAAHVILDYRALFARHDDYRSDRYRRERSDVHSRAAERMLALC
RTQGAVYVKIAQHVASMSHAVPPEFREQLKQLEDRAAPRPFWQIQRMLNR
QLPRGIAHTFSRFDAVPVAAASLAQVHRATLRESGDAVAVKVQYPGLESL
LMSDLVTIEMLSWLMSFVFPFFNMHWVVEQFRNNLQKELDFELEAASAMR
TAHFFDNDQRVCVPRVYSQYTTDKVLVMQYIDGFRVDDVPRMHSAGIDVQ
NVAQAVVDAFAQMIFVNGFVHCDPHAGNLMVTADERHKFKLYLLDHGLYR
ELSDSFRHSYCELWKGLVLRNSTLVERACEQLGAPGLANVFSLFLLNRSW
NFARQLGTDLRVKMSAEELGRIRSDLTEGGIKSQAEVSELMEAIPEELLL
VFKMNSLVRNVNKALGASVNRFKVNARYAVRGLRVHNDASAEARAPERRV
VASNRVERRVWRRVWKALDRVALWTDCAAVEMQLLLIDVCVWLSRPSLGQ
LVASNPSATNHTNELMSVDSFGQTMDAIIRGPKQSNSRAPRVRTTRPTVF
CELCGSTFSCKGNLNRHRRVTHQGKRVRCHHPECTESFSQMTDMTRHYRR
IHLNMRFKKASSYKRRLKSDATVK*
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spliced messenger RNA

>Ggra4472.t1 ID=Ggra4472.t1|Name=Ggra4472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000898_pilon:596847..599607- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCGCCGCTGTGGCGGAGGGTGTTCTACGCGGGCGCGCTGTGCTC
CACGTCCGTGGCCGGCGCGCTGGCCGTGGAGCGCGCGCCGTCGGCCGTGG
ACGCGCGCTCGCCCGTGGCGCCGCTGGCGTCAGGCGTCATCGCGCTGGTG
CGCTTCTCGCGCTCGCTGTACGCCGCCGCGCACGTCATTCTGGACTACCG
CGCGCTCTTCGCGCGCCATGACGACTACCGCTCCGACCGCTACCGGCGCG
AGCGCTCCGACGTGCACAGCCGCGCCGCCGAGCGCATGCTCGCGCTGTGC
CGCACGCAGGGCGCCGTGTACGTGAAGATTGCGCAGCACGTCGCCAGCAT
GTCGCACGCCGTGCCGCCCGAGTTTCGGGAACAGCTCAAGCAGCTGGAGG
ATCGCGCCGCGCCGCGCCCGTTCTGGCAGATTCAGCGCATGCTCAACCGC
CAGTTGCCGCGCGGAATTGCGCACACCTTCAGCCGCTTCGACGCTGTGCC
GGTTGCGGCTGCGTCGCTGGCGCAGGTGCATCGCGCCACGCTGCGCGAGT
CCGGCGACGCCGTCGCCGTCAAGGTGCAGTACCCTGGCTTGGAGTCGCTG
CTCATGAGCGACTTGGTCACCATTGAGATGCTGTCGTGGCTCATGTCGTT
TGTGTTCCCGTTCTTCAACATGCATTGGGTGGTGGAGCAGTTCCGCAACA
ACTTGCAAAAGGAGCTGGACTTTGAGCTGGAGGCGGCGTCCGCCATGCGC
ACGGCGCACTTTTTCGACAACGACCAGCGCGTGTGCGTGCCGAGGGTGTA
CTCGCAGTACACCACCGACAAGGTGCTTGTGATGCAGTACATTGACGGCT
TTCGCGTGGATGACGTGCCACGCATGCATAGCGCCGGCATTGACGTGCAG
AACGTGGCTCAGGCGGTGGTGGATGCATTCGCGCAGATGATATTTGTGAA
CGGCTTTGTGCATTGCGACCCGCATGCCGGCAACCTGATGGTGACGGCTG
ACGAGCGCCATAAGTTCAAGCTGTACCTGTTGGACCACGGGCTGTACCGC
GAGCTGAGCGACAGCTTTCGCCACTCGTACTGCGAGCTGTGGAAGGGGCT
GGTGCTACGCAACTCCACGTTGGTGGAACGCGCGTGCGAACAGCTGGGGG
CGCCGGGCTTGGCCAACGTGTTCTCTCTGTTCCTGCTGAACCGCTCGTGG
AACTTTGCGCGCCAGCTGGGCACGGACCTGCGCGTGAAGATGAGCGCGGA
GGAGCTGGGGCGCATCCGAAGCGATCTGACGGAGGGGGGGATCAAGTCGC
AGGCGGAGGTGTCGGAGCTGATGGAGGCGATCCCGGAGGAGCTGCTGCTG
GTGTTCAAGATGAACTCGCTGGTGCGCAACGTGAACAAGGCGCTGGGCGC
CAGCGTGAACCGCTTCAAAGTGAACGCGCGCTACGCCGTGCGCGGACTGC
GCGTGCACAACGACGCGTCGGCCGAGGCGCGCGCGCCGGAGCGGCGCGTG
GTGGCCAGCAACCGCGTGGAGCGGCGCGTGTGGCGGCGCGTGTGGAAGGC
GTTGGATCGCGTCGCGCTGTGGACGGACTGCGCCGCCGTCGAGATGCAGC
TGCTGCTTATCGACGTGTGCGTGTGGCTCAGTCGCCCGTCGCTCGGGCAG
CTGGTTGCCTCAAACCCCTCCGCCACCAATCACACCAATGAGTTGATGAG
CGTGGATAGCTTCGGACAAACCATGGACGCCATCATTAGAGGCCCGAAAC
AGAGCAACTCCCGAGCTCCGCGCGTTCGAACCACTCGCCCTACCGTGTTC
TGCGAGCTATGCGGTTCTACGTTCAGCTGTAAGGGAAACCTAAATCGCCA
TCGGAGGGTGACTCATCAAGGAAAACGTGTGCGATGTCACCACCCCGAAT
GCACTGAGAGTTTCAGTCAAATGACAGATATGACCCGTCATTATAGACGC
ATACATCTCAACATGCGCTTCAAGAAGGCGAGCTCATACAAACGAAGGCT
GAAAAGTGATGCCACCGTCAAGTAA
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protein sequence of Ggra4472.t1

>Ggra4472.t1 ID=Ggra4472.t1|Name=Ggra4472.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=675bp
MRAPLWRRVFYAGALCSTSVAGALAVERAPSAVDARSPVAPLASGVIALV
RFSRSLYAAAHVILDYRALFARHDDYRSDRYRRERSDVHSRAAERMLALC
RTQGAVYVKIAQHVASMSHAVPPEFREQLKQLEDRAAPRPFWQIQRMLNR
QLPRGIAHTFSRFDAVPVAAASLAQVHRATLRESGDAVAVKVQYPGLESL
LMSDLVTIEMLSWLMSFVFPFFNMHWVVEQFRNNLQKELDFELEAASAMR
TAHFFDNDQRVCVPRVYSQYTTDKVLVMQYIDGFRVDDVPRMHSAGIDVQ
NVAQAVVDAFAQMIFVNGFVHCDPHAGNLMVTADERHKFKLYLLDHGLYR
ELSDSFRHSYCELWKGLVLRNSTLVERACEQLGAPGLANVFSLFLLNRSW
NFARQLGTDLRVKMSAEELGRIRSDLTEGGIKSQAEVSELMEAIPEELLL
VFKMNSLVRNVNKALGASVNRFKVNARYAVRGLRVHNDASAEARAPERRV
VASNRVERRVWRRVWKALDRVALWTDCAAVEMQLLLIDVCVWLSRPSLGQ
LVASNPSATNHTNELMSVDSFGQTMDAIIRGPKQSNSRAPRVRTTRPTVF
CELCGSTFSCKGNLNRHRRVTHQGKRVRCHHPECTESFSQMTDMTRHYRR
IHLNMRFKKASSYKRRLKSDATVK*
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mRNA from alignment at tig00000898_pilon:596847..599607-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4472.t1 ID=Ggra4472.t1|Name=Ggra4472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2761bp|location=Sequence derived from alignment at tig00000898_pilon:596847..599607- (Gracilaria gracilis GNS1m male)
ATGAGGGCGCCGCTGTGGCGGAGGGTGTTCTACGCGGGCGCGCTGTGCTC CACGTCCGTGGCCGGCGCGCTGGCCGTGGAGCGCGCGCCGTCGGCCGTGG ACGCGCGCTCGCCCGTGGCGCCGCTGGCGTCAGGCGTCATCGCGCTGGTG CGCTTCTCGCGCTCGCTGTACGCCGCCGCGCACGTCATTCTGGACTACCG CGCGCTCTTCGCGCGCCATGACGACTACCGCTCCGACCGCTACCGGCGCG AGCGCTCCGACGTGCACAGCCGCGCCGCCGAGCGCATGCTCGCGCTGTGC CGCACGCAGGGCGCCGTGTACGTGAAGATTGCGCAGCACGTCGCCAGCAT GTCGCACGCCGTGCCGCCCGAGTTTCGGGAACAGCTCAAGCAGCTGGAGG ATCGCGCCGCGCCGCGCCCGTTCTGGCAGATTCAGCGCATGCTCAACCGC CAGTTGCCGCGCGGAATTGCGCACACCTTCAGCCGCTTCGACGCTGTGCC GGTTGCGGCTGCGTCGCTGGCGCAGGTGCATCGCGCCACGCTGCGCGAGT CCGGCGACGCCGTCGCCGTCAAGGTGCAGTACCCTGGCTTGGAGTCGCTG CTCATGAGCGACTTGGTCACCATTGAGATGCTGTCGTGGCTCATGTCGTT TGTGTTCCCGTTCTTCAACATGCATTGGGTGGTGGAGCAGTTCCGCAACA ACTTGCAAAAGGAGCTGGACTTTGAGCTGGAGGCGGCGTCCGCCATGCGC ACGGCGCACTTTTTCGACAACGACCAGCGCGTGTGCGTGCCGAGGGTGTA CTCGCAGTACACCACCGACAAGGTGCTTGTGATGCAGTACATTGACGGCT TTCGCGTGGATGACGTGCCACGCATGCATAGCGCCGGCATTGACGTGCAG AACGTGGCTCAGGCGGTGGTGGATGCATTCGCGCAGATGATATTTGTGAA CGGCTTTGTGCATTGCGACCCGCATGCCGGCAACCTGATGGTGACGGCTG ACGAGCGCCATAAGTTCAAGCTGTACCTGTTGGACCACGGGCTGTACCGC GAGCTGAGCGACAGCTTTCGCCACTCGTACTGCGAGCTGTGGAAGGGGCT GGTGCTACGCAACTCCACGTTGGTGGAACGCGCGTGCGAACAGCTGGGGG CGCCGGGCTTGGCCAACGTGTTCTCTCTGTTCCTGCTGAACCGCTCGTGG AACTTTGCGCGCCAGCTGGGCACGGACCTGCGCGTGAAGATGAGCGCGGA GGAGCTGGGGCGCATCCGAAGCGATCTGACGGAGGGGGGGATCAAGTCGC AGGCGGAGGTGTCGGAGCTGATGGAGGCGATCCCGGAGGAGCTGCTGCTG GTGTTCAAGATGAACTCGCTGGTGCGCAACGTGAACAAGGCGCTGGGCGC CAGCGTGAACCGCTTCAAAGTGAACGCGCGCTACGCCGTGCGCGGACTGC GCGTGCACAACGACGCGTCGGCCGAGGCGCGCGCGCCGGAGCGGCGCGTG GTGGCCAGCAACCGCGTGGAGCGGCGCGTGTGGCGGCGCGTGTGGAAGGC GTTGGATCGCGTCGCGCTGTGGACGGACTGCGCCGCCGTCGAGATGCAGC TGCTGCTTATCGACGTGTGCGTGTGGCTCAGTCGCGTGTGGGCTCGCGCG CGCGGCGCGCGTGTCGACGCTGCTGCATCGCGCCGCGCCGCCTTCATTGG CTGACTTTGTGCGCGCGTGCCTTTTTAAAAAAACGAAAAGAAACTGTCAT GCACCCGTGCAGCCGCCTCACAGAGACGTTGTTCTTGCTCAAGCTACGCC TCCTTCTTCTCTTCCTTCCTTTCTTCCTCGCGCTCGCTGCTTCGCCGCCT TATCGCTCTTCAGAGGACAAACCGCCTTTCCCTCCTCGCTACAGTCCCCC GCCCCGCCCCCACCCCGCCCCCACCCTCGTCCCCCGCCCCGGCACCTCGC CCCCCGCCCGCGCCCGCGCCCGGTGCGCGTGCGCGTGCGCGTGCGCGTGC GCGTGCGCGGCGCGGGCGCGGCGCGGGCGGGTGGAAAACGTTTGGCGCCG CTGACATGCTCTACCTCATGTGTCTAGCCGCCGCCTATATAAGCTCTTAG AAGCATTCTTAGAAGGTTTCATGTAGCCAAAGTGCGTGCGCTTCATCATT TAATTCTCGCTCATCAACTTCACATGACTCATCATCGTCTACAAACCGTG CTTCACCCGGTTTCACACGATGCCGTCGCTTCCACCTCGTCGTACTATCC ATCCACAGTGGAGTGTTCGCAGCCGTCGCTCGGGCAGCTGGTTGCCTCAA ACCCCTCCGCCACCAATCACACCAATGAGTTGATGAGCGTGGATAGCTTC GGACAAACCATGGACGCCATCATTAGAGGCCCGAAACAGAGCAACTCCCG AGCTCCGCGCGTTCGAACCACTCGCCCTACCGTGTTCTGCGAGCTATGCG GTTCTACGTTCAGCTGTAAGGGAAACCTAAATCGCCATCGGAGGGTGACT CATCAAGGAAAACGTGTGCGATGTCACCACCCCGAATGCACTGAGGTAAG TTCTCCCCCTATCCCGTGTCCATCATGTCCATCTCACTCTGCTCACCGTA CTAACCTTTGCCTCGCTTCTTCTCCCTTCTTTCTGCATCTGTAGAGTTTC AGTCAAATGACAGATATGACCCGTCATTATAGACGCATACATCTCAACAT GCGCTTCAAGAAGGCGAGCTCATACAAACGAAGGCTGAAAAGTGATGCCA CCGTCAAGTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:596847..599607-

>Ggra4472.t1 ID=Ggra4472.t1|Name=Ggra4472.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2025bp|location=Sequence derived from alignment at tig00000898_pilon:596847..599607- (Gracilaria gracilis GNS1m male)
ATGAGGGCGCCGCTGTGGCGGAGGGTGTTCTACGCGGGCGCGCTGTGCTC
CACGTCCGTGGCCGGCGCGCTGGCCGTGGAGCGCGCGCCGTCGGCCGTGG
ACGCGCGCTCGCCCGTGGCGCCGCTGGCGTCAGGCGTCATCGCGCTGGTG
CGCTTCTCGCGCTCGCTGTACGCCGCCGCGCACGTCATTCTGGACTACCG
CGCGCTCTTCGCGCGCCATGACGACTACCGCTCCGACCGCTACCGGCGCG
AGCGCTCCGACGTGCACAGCCGCGCCGCCGAGCGCATGCTCGCGCTGTGC
CGCACGCAGGGCGCCGTGTACGTGAAGATTGCGCAGCACGTCGCCAGCAT
GTCGCACGCCGTGCCGCCCGAGTTTCGGGAACAGCTCAAGCAGCTGGAGG
ATCGCGCCGCGCCGCGCCCGTTCTGGCAGATTCAGCGCATGCTCAACCGC
CAGTTGCCGCGCGGAATTGCGCACACCTTCAGCCGCTTCGACGCTGTGCC
GGTTGCGGCTGCGTCGCTGGCGCAGGTGCATCGCGCCACGCTGCGCGAGT
CCGGCGACGCCGTCGCCGTCAAGGTGCAGTACCCTGGCTTGGAGTCGCTG
CTCATGAGCGACTTGGTCACCATTGAGATGCTGTCGTGGCTCATGTCGTT
TGTGTTCCCGTTCTTCAACATGCATTGGGTGGTGGAGCAGTTCCGCAACA
ACTTGCAAAAGGAGCTGGACTTTGAGCTGGAGGCGGCGTCCGCCATGCGC
ACGGCGCACTTTTTCGACAACGACCAGCGCGTGTGCGTGCCGAGGGTGTA
CTCGCAGTACACCACCGACAAGGTGCTTGTGATGCAGTACATTGACGGCT
TTCGCGTGGATGACGTGCCACGCATGCATAGCGCCGGCATTGACGTGCAG
AACGTGGCTCAGGCGGTGGTGGATGCATTCGCGCAGATGATATTTGTGAA
CGGCTTTGTGCATTGCGACCCGCATGCCGGCAACCTGATGGTGACGGCTG
ACGAGCGCCATAAGTTCAAGCTGTACCTGTTGGACCACGGGCTGTACCGC
GAGCTGAGCGACAGCTTTCGCCACTCGTACTGCGAGCTGTGGAAGGGGCT
GGTGCTACGCAACTCCACGTTGGTGGAACGCGCGTGCGAACAGCTGGGGG
CGCCGGGCTTGGCCAACGTGTTCTCTCTGTTCCTGCTGAACCGCTCGTGG
AACTTTGCGCGCCAGCTGGGCACGGACCTGCGCGTGAAGATGAGCGCGGA
GGAGCTGGGGCGCATCCGAAGCGATCTGACGGAGGGGGGGATCAAGTCGC
AGGCGGAGGTGTCGGAGCTGATGGAGGCGATCCCGGAGGAGCTGCTGCTG
GTGTTCAAGATGAACTCGCTGGTGCGCAACGTGAACAAGGCGCTGGGCGC
CAGCGTGAACCGCTTCAAAGTGAACGCGCGCTACGCCGTGCGCGGACTGC
GCGTGCACAACGACGCGTCGGCCGAGGCGCGCGCGCCGGAGCGGCGCGTG
GTGGCCAGCAACCGCGTGGAGCGGCGCGTGTGGCGGCGCGTGTGGAAGGC
GTTGGATCGCGTCGCGCTGTGGACGGACTGCGCCGCCGTCGAGATGCAGC
TGCTGCTTATCGACGTGTGCGTGTGGCTCAGTCGCCCGTCGCTCGGGCAG
CTGGTTGCCTCAAACCCCTCCGCCACCAATCACACCAATGAGTTGATGAG
CGTGGATAGCTTCGGACAAACCATGGACGCCATCATTAGAGGCCCGAAAC
AGAGCAACTCCCGAGCTCCGCGCGTTCGAACCACTCGCCCTACCGTGTTC
TGCGAGCTATGCGGTTCTACGTTCAGCTGTAAGGGAAACCTAAATCGCCA
TCGGAGGGTGACTCATCAAGGAAAACGTGTGCGATGTCACCACCCCGAAT
GCACTGAGAGTTTCAGTCAAATGACAGATATGACCCGTCATTATAGACGC
ATACATCTCAACATGCGCTTCAAGAAGGCGAGCTCATACAAACGAAGGCT
GAAAAGTGATGCCACCGTCAAGTAA
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