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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 78898.MVEG_03924T0 |
| PFAMs | ABC1 |
| Max annot lvl | 4751|Fungi |
| KEGG ko | ko:K08869 |
| GOs | GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0019866,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0048878,GO:0050801,GO:0055081,GO:0055088,GO:0055091,GO:0065007,GO:0065008,GO:0071840,GO:0098573 |
| Evalue | 9.98e-86 |
| EggNOG OGs | COG0661@1|root,KOG1235@2759|Eukaryota,38DDN@33154|Opisthokonta,3NVI9@4751|Fungi,1GRUZ@112252|Fungi incertae sedis |
| Description | ABC1 family |
| COG category | P |
| BRITE | ko00000,ko01001 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra4472.t1.stop1 | Ggra4472.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000898_pilon 596847..596849 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra4472.t1.start1 | Ggra4472.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000898_pilon 599605..599607 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra4472.t1 ID=Ggra4472.t1|Name=Ggra4472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp MRAPLWRRVFYAGALCSTSVAGALAVERAPSAVDARSPVAPLASGVIALV RFSRSLYAAAHVILDYRALFARHDDYRSDRYRRERSDVHSRAAERMLALC RTQGAVYVKIAQHVASMSHAVPPEFREQLKQLEDRAAPRPFWQIQRMLNR QLPRGIAHTFSRFDAVPVAAASLAQVHRATLRESGDAVAVKVQYPGLESL LMSDLVTIEMLSWLMSFVFPFFNMHWVVEQFRNNLQKELDFELEAASAMR TAHFFDNDQRVCVPRVYSQYTTDKVLVMQYIDGFRVDDVPRMHSAGIDVQ NVAQAVVDAFAQMIFVNGFVHCDPHAGNLMVTADERHKFKLYLLDHGLYR ELSDSFRHSYCELWKGLVLRNSTLVERACEQLGAPGLANVFSLFLLNRSW NFARQLGTDLRVKMSAEELGRIRSDLTEGGIKSQAEVSELMEAIPEELLL VFKMNSLVRNVNKALGASVNRFKVNARYAVRGLRVHNDASAEARAPERRV VASNRVERRVWRRVWKALDRVALWTDCAAVEMQLLLIDVCVWLSRPSLGQ LVASNPSATNHTNELMSVDSFGQTMDAIIRGPKQSNSRAPRVRTTRPTVF CELCGSTFSCKGNLNRHRRVTHQGKRVRCHHPECTESFSQMTDMTRHYRR IHLNMRFKKASSYKRRLKSDATVK* back to topspliced messenger RNA >Ggra4472.t1 ID=Ggra4472.t1|Name=Ggra4472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000898_pilon:596847..599607- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGGGCGCCGCTGTGGCGGAGGGTGTTCTACGCGGGCGCGCTGTGCTC CACGTCCGTGGCCGGCGCGCTGGCCGTGGAGCGCGCGCCGTCGGCCGTGG ACGCGCGCTCGCCCGTGGCGCCGCTGGCGTCAGGCGTCATCGCGCTGGTG CGCTTCTCGCGCTCGCTGTACGCCGCCGCGCACGTCATTCTGGACTACCG CGCGCTCTTCGCGCGCCATGACGACTACCGCTCCGACCGCTACCGGCGCG AGCGCTCCGACGTGCACAGCCGCGCCGCCGAGCGCATGCTCGCGCTGTGC CGCACGCAGGGCGCCGTGTACGTGAAGATTGCGCAGCACGTCGCCAGCAT GTCGCACGCCGTGCCGCCCGAGTTTCGGGAACAGCTCAAGCAGCTGGAGG ATCGCGCCGCGCCGCGCCCGTTCTGGCAGATTCAGCGCATGCTCAACCGC CAGTTGCCGCGCGGAATTGCGCACACCTTCAGCCGCTTCGACGCTGTGCC GGTTGCGGCTGCGTCGCTGGCGCAGGTGCATCGCGCCACGCTGCGCGAGT CCGGCGACGCCGTCGCCGTCAAGGTGCAGTACCCTGGCTTGGAGTCGCTG CTCATGAGCGACTTGGTCACCATTGAGATGCTGTCGTGGCTCATGTCGTT TGTGTTCCCGTTCTTCAACATGCATTGGGTGGTGGAGCAGTTCCGCAACA ACTTGCAAAAGGAGCTGGACTTTGAGCTGGAGGCGGCGTCCGCCATGCGC ACGGCGCACTTTTTCGACAACGACCAGCGCGTGTGCGTGCCGAGGGTGTA CTCGCAGTACACCACCGACAAGGTGCTTGTGATGCAGTACATTGACGGCT TTCGCGTGGATGACGTGCCACGCATGCATAGCGCCGGCATTGACGTGCAG AACGTGGCTCAGGCGGTGGTGGATGCATTCGCGCAGATGATATTTGTGAA CGGCTTTGTGCATTGCGACCCGCATGCCGGCAACCTGATGGTGACGGCTG ACGAGCGCCATAAGTTCAAGCTGTACCTGTTGGACCACGGGCTGTACCGC GAGCTGAGCGACAGCTTTCGCCACTCGTACTGCGAGCTGTGGAAGGGGCT GGTGCTACGCAACTCCACGTTGGTGGAACGCGCGTGCGAACAGCTGGGGG CGCCGGGCTTGGCCAACGTGTTCTCTCTGTTCCTGCTGAACCGCTCGTGG AACTTTGCGCGCCAGCTGGGCACGGACCTGCGCGTGAAGATGAGCGCGGA GGAGCTGGGGCGCATCCGAAGCGATCTGACGGAGGGGGGGATCAAGTCGC AGGCGGAGGTGTCGGAGCTGATGGAGGCGATCCCGGAGGAGCTGCTGCTG GTGTTCAAGATGAACTCGCTGGTGCGCAACGTGAACAAGGCGCTGGGCGC CAGCGTGAACCGCTTCAAAGTGAACGCGCGCTACGCCGTGCGCGGACTGC GCGTGCACAACGACGCGTCGGCCGAGGCGCGCGCGCCGGAGCGGCGCGTG GTGGCCAGCAACCGCGTGGAGCGGCGCGTGTGGCGGCGCGTGTGGAAGGC GTTGGATCGCGTCGCGCTGTGGACGGACTGCGCCGCCGTCGAGATGCAGC TGCTGCTTATCGACGTGTGCGTGTGGCTCAGTCGCCCGTCGCTCGGGCAG CTGGTTGCCTCAAACCCCTCCGCCACCAATCACACCAATGAGTTGATGAG CGTGGATAGCTTCGGACAAACCATGGACGCCATCATTAGAGGCCCGAAAC AGAGCAACTCCCGAGCTCCGCGCGTTCGAACCACTCGCCCTACCGTGTTC TGCGAGCTATGCGGTTCTACGTTCAGCTGTAAGGGAAACCTAAATCGCCA TCGGAGGGTGACTCATCAAGGAAAACGTGTGCGATGTCACCACCCCGAAT GCACTGAGAGTTTCAGTCAAATGACAGATATGACCCGTCATTATAGACGC ATACATCTCAACATGCGCTTCAAGAAGGCGAGCTCATACAAACGAAGGCT GAAAAGTGATGCCACCGTCAAGTAA back to topprotein sequence of Ggra4472.t1 >Ggra4472.t1 ID=Ggra4472.t1|Name=Ggra4472.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=675bp
MRAPLWRRVFYAGALCSTSVAGALAVERAPSAVDARSPVAPLASGVIALV RFSRSLYAAAHVILDYRALFARHDDYRSDRYRRERSDVHSRAAERMLALC RTQGAVYVKIAQHVASMSHAVPPEFREQLKQLEDRAAPRPFWQIQRMLNR QLPRGIAHTFSRFDAVPVAAASLAQVHRATLRESGDAVAVKVQYPGLESL LMSDLVTIEMLSWLMSFVFPFFNMHWVVEQFRNNLQKELDFELEAASAMR TAHFFDNDQRVCVPRVYSQYTTDKVLVMQYIDGFRVDDVPRMHSAGIDVQ NVAQAVVDAFAQMIFVNGFVHCDPHAGNLMVTADERHKFKLYLLDHGLYR ELSDSFRHSYCELWKGLVLRNSTLVERACEQLGAPGLANVFSLFLLNRSW NFARQLGTDLRVKMSAEELGRIRSDLTEGGIKSQAEVSELMEAIPEELLL VFKMNSLVRNVNKALGASVNRFKVNARYAVRGLRVHNDASAEARAPERRV VASNRVERRVWRRVWKALDRVALWTDCAAVEMQLLLIDVCVWLSRPSLGQ LVASNPSATNHTNELMSVDSFGQTMDAIIRGPKQSNSRAPRVRTTRPTVF CELCGSTFSCKGNLNRHRRVTHQGKRVRCHHPECTESFSQMTDMTRHYRR IHLNMRFKKASSYKRRLKSDATVK* back to topmRNA from alignment at tig00000898_pilon:596847..599607- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra4472.t1 ID=Ggra4472.t1|Name=Ggra4472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2761bp|location=Sequence derived from alignment at tig00000898_pilon:596847..599607- (Gracilaria gracilis GNS1m male) ATGAGGGCGCCGCTGTGGCGGAGGGTGTTCTACGCGGGCGCGCTGTGCTC
CACGTCCGTGGCCGGCGCGCTGGCCGTGGAGCGCGCGCCGTCGGCCGTGG
ACGCGCGCTCGCCCGTGGCGCCGCTGGCGTCAGGCGTCATCGCGCTGGTG
CGCTTCTCGCGCTCGCTGTACGCCGCCGCGCACGTCATTCTGGACTACCG
CGCGCTCTTCGCGCGCCATGACGACTACCGCTCCGACCGCTACCGGCGCG
AGCGCTCCGACGTGCACAGCCGCGCCGCCGAGCGCATGCTCGCGCTGTGC
CGCACGCAGGGCGCCGTGTACGTGAAGATTGCGCAGCACGTCGCCAGCAT
GTCGCACGCCGTGCCGCCCGAGTTTCGGGAACAGCTCAAGCAGCTGGAGG
ATCGCGCCGCGCCGCGCCCGTTCTGGCAGATTCAGCGCATGCTCAACCGC
CAGTTGCCGCGCGGAATTGCGCACACCTTCAGCCGCTTCGACGCTGTGCC
GGTTGCGGCTGCGTCGCTGGCGCAGGTGCATCGCGCCACGCTGCGCGAGT
CCGGCGACGCCGTCGCCGTCAAGGTGCAGTACCCTGGCTTGGAGTCGCTG
CTCATGAGCGACTTGGTCACCATTGAGATGCTGTCGTGGCTCATGTCGTT
TGTGTTCCCGTTCTTCAACATGCATTGGGTGGTGGAGCAGTTCCGCAACA
ACTTGCAAAAGGAGCTGGACTTTGAGCTGGAGGCGGCGTCCGCCATGCGC
ACGGCGCACTTTTTCGACAACGACCAGCGCGTGTGCGTGCCGAGGGTGTA
CTCGCAGTACACCACCGACAAGGTGCTTGTGATGCAGTACATTGACGGCT
TTCGCGTGGATGACGTGCCACGCATGCATAGCGCCGGCATTGACGTGCAG
AACGTGGCTCAGGCGGTGGTGGATGCATTCGCGCAGATGATATTTGTGAA
CGGCTTTGTGCATTGCGACCCGCATGCCGGCAACCTGATGGTGACGGCTG
ACGAGCGCCATAAGTTCAAGCTGTACCTGTTGGACCACGGGCTGTACCGC
GAGCTGAGCGACAGCTTTCGCCACTCGTACTGCGAGCTGTGGAAGGGGCT
GGTGCTACGCAACTCCACGTTGGTGGAACGCGCGTGCGAACAGCTGGGGG
CGCCGGGCTTGGCCAACGTGTTCTCTCTGTTCCTGCTGAACCGCTCGTGG
AACTTTGCGCGCCAGCTGGGCACGGACCTGCGCGTGAAGATGAGCGCGGA
GGAGCTGGGGCGCATCCGAAGCGATCTGACGGAGGGGGGGATCAAGTCGC
AGGCGGAGGTGTCGGAGCTGATGGAGGCGATCCCGGAGGAGCTGCTGCTG
GTGTTCAAGATGAACTCGCTGGTGCGCAACGTGAACAAGGCGCTGGGCGC
CAGCGTGAACCGCTTCAAAGTGAACGCGCGCTACGCCGTGCGCGGACTGC
GCGTGCACAACGACGCGTCGGCCGAGGCGCGCGCGCCGGAGCGGCGCGTG
GTGGCCAGCAACCGCGTGGAGCGGCGCGTGTGGCGGCGCGTGTGGAAGGC
GTTGGATCGCGTCGCGCTGTGGACGGACTGCGCCGCCGTCGAGATGCAGC
TGCTGCTTATCGACGTGTGCGTGTGGCTCAGTCGCGTGTGGGCTCGCGCG
CGCGGCGCGCGTGTCGACGCTGCTGCATCGCGCCGCGCCGCCTTCATTGG
CTGACTTTGTGCGCGCGTGCCTTTTTAAAAAAACGAAAAGAAACTGTCAT
GCACCCGTGCAGCCGCCTCACAGAGACGTTGTTCTTGCTCAAGCTACGCC
TCCTTCTTCTCTTCCTTCCTTTCTTCCTCGCGCTCGCTGCTTCGCCGCCT
TATCGCTCTTCAGAGGACAAACCGCCTTTCCCTCCTCGCTACAGTCCCCC
GCCCCGCCCCCACCCCGCCCCCACCCTCGTCCCCCGCCCCGGCACCTCGC
CCCCCGCCCGCGCCCGCGCCCGGTGCGCGTGCGCGTGCGCGTGCGCGTGC
GCGTGCGCGGCGCGGGCGCGGCGCGGGCGGGTGGAAAACGTTTGGCGCCG
CTGACATGCTCTACCTCATGTGTCTAGCCGCCGCCTATATAAGCTCTTAG
AAGCATTCTTAGAAGGTTTCATGTAGCCAAAGTGCGTGCGCTTCATCATT
TAATTCTCGCTCATCAACTTCACATGACTCATCATCGTCTACAAACCGTG
CTTCACCCGGTTTCACACGATGCCGTCGCTTCCACCTCGTCGTACTATCC
ATCCACAGTGGAGTGTTCGCAGCCGTCGCTCGGGCAGCTGGTTGCCTCAA
ACCCCTCCGCCACCAATCACACCAATGAGTTGATGAGCGTGGATAGCTTC
GGACAAACCATGGACGCCATCATTAGAGGCCCGAAACAGAGCAACTCCCG
AGCTCCGCGCGTTCGAACCACTCGCCCTACCGTGTTCTGCGAGCTATGCG
GTTCTACGTTCAGCTGTAAGGGAAACCTAAATCGCCATCGGAGGGTGACT
CATCAAGGAAAACGTGTGCGATGTCACCACCCCGAATGCACTGAGGTAAG
TTCTCCCCCTATCCCGTGTCCATCATGTCCATCTCACTCTGCTCACCGTA
CTAACCTTTGCCTCGCTTCTTCTCCCTTCTTTCTGCATCTGTAGAGTTTC
AGTCAAATGACAGATATGACCCGTCATTATAGACGCATACATCTCAACAT
GCGCTTCAAGAAGGCGAGCTCATACAAACGAAGGCTGAAAAGTGATGCCA
CCGTCAAGTAA back to topCoding sequence (CDS) from alignment at tig00000898_pilon:596847..599607- >Ggra4472.t1 ID=Ggra4472.t1|Name=Ggra4472.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2025bp|location=Sequence derived from alignment at tig00000898_pilon:596847..599607- (Gracilaria gracilis GNS1m male) ATGAGGGCGCCGCTGTGGCGGAGGGTGTTCTACGCGGGCGCGCTGTGCTC CACGTCCGTGGCCGGCGCGCTGGCCGTGGAGCGCGCGCCGTCGGCCGTGG ACGCGCGCTCGCCCGTGGCGCCGCTGGCGTCAGGCGTCATCGCGCTGGTG CGCTTCTCGCGCTCGCTGTACGCCGCCGCGCACGTCATTCTGGACTACCG CGCGCTCTTCGCGCGCCATGACGACTACCGCTCCGACCGCTACCGGCGCG AGCGCTCCGACGTGCACAGCCGCGCCGCCGAGCGCATGCTCGCGCTGTGC CGCACGCAGGGCGCCGTGTACGTGAAGATTGCGCAGCACGTCGCCAGCAT GTCGCACGCCGTGCCGCCCGAGTTTCGGGAACAGCTCAAGCAGCTGGAGG ATCGCGCCGCGCCGCGCCCGTTCTGGCAGATTCAGCGCATGCTCAACCGC CAGTTGCCGCGCGGAATTGCGCACACCTTCAGCCGCTTCGACGCTGTGCC GGTTGCGGCTGCGTCGCTGGCGCAGGTGCATCGCGCCACGCTGCGCGAGT CCGGCGACGCCGTCGCCGTCAAGGTGCAGTACCCTGGCTTGGAGTCGCTG CTCATGAGCGACTTGGTCACCATTGAGATGCTGTCGTGGCTCATGTCGTT TGTGTTCCCGTTCTTCAACATGCATTGGGTGGTGGAGCAGTTCCGCAACA ACTTGCAAAAGGAGCTGGACTTTGAGCTGGAGGCGGCGTCCGCCATGCGC ACGGCGCACTTTTTCGACAACGACCAGCGCGTGTGCGTGCCGAGGGTGTA CTCGCAGTACACCACCGACAAGGTGCTTGTGATGCAGTACATTGACGGCT TTCGCGTGGATGACGTGCCACGCATGCATAGCGCCGGCATTGACGTGCAG AACGTGGCTCAGGCGGTGGTGGATGCATTCGCGCAGATGATATTTGTGAA CGGCTTTGTGCATTGCGACCCGCATGCCGGCAACCTGATGGTGACGGCTG ACGAGCGCCATAAGTTCAAGCTGTACCTGTTGGACCACGGGCTGTACCGC GAGCTGAGCGACAGCTTTCGCCACTCGTACTGCGAGCTGTGGAAGGGGCT GGTGCTACGCAACTCCACGTTGGTGGAACGCGCGTGCGAACAGCTGGGGG CGCCGGGCTTGGCCAACGTGTTCTCTCTGTTCCTGCTGAACCGCTCGTGG AACTTTGCGCGCCAGCTGGGCACGGACCTGCGCGTGAAGATGAGCGCGGA GGAGCTGGGGCGCATCCGAAGCGATCTGACGGAGGGGGGGATCAAGTCGC AGGCGGAGGTGTCGGAGCTGATGGAGGCGATCCCGGAGGAGCTGCTGCTG GTGTTCAAGATGAACTCGCTGGTGCGCAACGTGAACAAGGCGCTGGGCGC CAGCGTGAACCGCTTCAAAGTGAACGCGCGCTACGCCGTGCGCGGACTGC GCGTGCACAACGACGCGTCGGCCGAGGCGCGCGCGCCGGAGCGGCGCGTG GTGGCCAGCAACCGCGTGGAGCGGCGCGTGTGGCGGCGCGTGTGGAAGGC GTTGGATCGCGTCGCGCTGTGGACGGACTGCGCCGCCGTCGAGATGCAGC TGCTGCTTATCGACGTGTGCGTGTGGCTCAGTCGCCCGTCGCTCGGGCAG CTGGTTGCCTCAAACCCCTCCGCCACCAATCACACCAATGAGTTGATGAG CGTGGATAGCTTCGGACAAACCATGGACGCCATCATTAGAGGCCCGAAAC AGAGCAACTCCCGAGCTCCGCGCGTTCGAACCACTCGCCCTACCGTGTTC TGCGAGCTATGCGGTTCTACGTTCAGCTGTAAGGGAAACCTAAATCGCCA TCGGAGGGTGACTCATCAAGGAAAACGTGTGCGATGTCACCACCCCGAAT GCACTGAGAGTTTCAGTCAAATGACAGATATGACCCGTCATTATAGACGC ATACATCTCAACATGCGCTTCAAGAAGGCGAGCTCATACAAACGAAGGCT GAAAAGTGATGCCACCGTCAAGTAA back to top
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