Ggra4466.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4466.t1
Unique NameGgra4466.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:572719..573710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S149_20V6.1
Max annot lvl33090|Viridiplantae
Evalue1.13e-82
EggNOG OGs2ANNQ@1|root,2RZET@2759|Eukaryota,37UVI@33090|Viridiplantae
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4466Ggra4466Gracilaria gracilis GNS1m malegenetig00000898_pilon 572719..573710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4466.t1Ggra4466.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 572719..573710 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4466.t1.start1Ggra4466.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 572719..572721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4466.t1.CDS1Ggra4466.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 572719..573442 +
Ggra4466.t1.CDS2Ggra4466.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 573523..573710 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4466.t1.exon1Ggra4466.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 572719..573442 +
Ggra4466.t1.exon2Ggra4466.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 573523..573710 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4466.t1.intron1Ggra4466.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 573443..573522 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4466.t1.stop1Ggra4466.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 573708..573710 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4466.t1 ID=Ggra4466.t1|Name=Ggra4466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MTAELSKLANDPNFVVQFAVGDPMPELKPQSRDSGLKFCRIYFDTPKRYI
LKKAHMSREDNRIFDTDSGKLVYVSHHPGKNPYDMFDPLGTTNQDMRYSV
AGGEWESVCDVSGRGQYRSFKIRPKSLSRHGRQYIKQGDQILFNVGKIGK
LKTMSIRDHFMVADKDNADLVYKCVADVMGRTIQIYNAEEELVAQMAKTT
KALLQTAVFGGGSESTIDIAPGVDCSVILAVVFGMGQVGAHFMGDVFENF
VKDPLKDAAVDSAVDASGMGAVVDGYNEMSNEAFHQVGSIARVGRFIHNN
FFN*
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spliced messenger RNA

>Ggra4466.t1 ID=Ggra4466.t1|Name=Ggra4466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000898_pilon:572719..573710+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCAGAGCTGAGCAAGTTGGCAAATGACCCGAACTTTGTTGTACA
ATTCGCCGTTGGCGACCCCATGCCCGAGCTTAAACCTCAATCTCGTGATT
CTGGTCTTAAGTTCTGCAGAATATATTTCGACACCCCGAAGCGCTACATC
TTAAAGAAGGCTCACATGTCGCGTGAGGACAACCGCATCTTCGACACGGA
CTCTGGCAAACTTGTGTACGTAAGTCACCATCCTGGAAAGAATCCGTATG
ACATGTTCGATCCTCTAGGTACCACAAACCAGGACATGAGGTACAGCGTG
GCTGGTGGAGAATGGGAATCAGTTTGTGATGTTTCTGGTCGAGGTCAGTA
CCGAAGCTTCAAAATAAGACCTAAGTCTCTCTCCCGGCATGGACGCCAGT
ATATAAAGCAAGGTGACCAAATCTTGTTCAACGTTGGGAAGATTGGAAAA
CTGAAAACTATGTCCATTAGGGACCACTTCATGGTCGCCGACAAAGACAA
TGCTGATCTAGTTTACAAGTGCGTGGCGGACGTTATGGGTCGAACTATTC
AAATCTACAACGCCGAAGAGGAACTTGTTGCGCAGATGGCGAAGACAACC
AAAGCTTTGCTACAGACAGCTGTCTTTGGAGGTGGTTCTGAAAGCACCAT
TGATATCGCTCCCGGCGTCGATTGCAGTGTCATCCTAGCAGTTGTTTTCG
GAATGGGGCAAGTTGGAGCTCATTTCATGGGCGACGTATTTGAGAATTTC
GTGAAGGATCCTTTGAAAGATGCGGCGGTTGATAGCGCAGTTGACGCGTC
GGGTATGGGCGCAGTCGTGGATGGTTACAACGAGATGTCGAACGAGGCGT
TTCATCAGGTTGGTTCCATTGCACGAGTCGGGCGATTCATTCATAACAAC
TTCTTCAACTAA
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protein sequence of Ggra4466.t1

>Ggra4466.t1 ID=Ggra4466.t1|Name=Ggra4466.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MTAELSKLANDPNFVVQFAVGDPMPELKPQSRDSGLKFCRIYFDTPKRYI
LKKAHMSREDNRIFDTDSGKLVYVSHHPGKNPYDMFDPLGTTNQDMRYSV
AGGEWESVCDVSGRGQYRSFKIRPKSLSRHGRQYIKQGDQILFNVGKIGK
LKTMSIRDHFMVADKDNADLVYKCVADVMGRTIQIYNAEEELVAQMAKTT
KALLQTAVFGGGSESTIDIAPGVDCSVILAVVFGMGQVGAHFMGDVFENF
VKDPLKDAAVDSAVDASGMGAVVDGYNEMSNEAFHQVGSIARVGRFIHNN
FFN*
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mRNA from alignment at tig00000898_pilon:572719..573710+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4466.t1 ID=Ggra4466.t1|Name=Ggra4466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=992bp|location=Sequence derived from alignment at tig00000898_pilon:572719..573710+ (Gracilaria gracilis GNS1m male)
ATGACGGCAGAGCTGAGCAAGTTGGCAAATGACCCGAACTTTGTTGTACA
ATTCGCCGTTGGCGACCCCATGCCCGAGCTTAAACCTCAATCTCGTGATT
CTGGTCTTAAGTTCTGCAGAATATATTTCGACACCCCGAAGCGCTACATC
TTAAAGAAGGCTCACATGTCGCGTGAGGACAACCGCATCTTCGACACGGA
CTCTGGCAAACTTGTGTACGTAAGTCACCATCCTGGAAAGAATCCGTATG
ACATGTTCGATCCTCTAGGTACCACAAACCAGGACATGAGGTACAGCGTG
GCTGGTGGAGAATGGGAATCAGTTTGTGATGTTTCTGGTCGAGGTCAGTA
CCGAAGCTTCAAAATAAGACCTAAGTCTCTCTCCCGGCATGGACGCCAGT
ATATAAAGCAAGGTGACCAAATCTTGTTCAACGTTGGGAAGATTGGAAAA
CTGAAAACTATGTCCATTAGGGACCACTTCATGGTCGCCGACAAAGACAA
TGCTGATCTAGTTTACAAGTGCGTGGCGGACGTTATGGGTCGAACTATTC
AAATCTACAACGCCGAAGAGGAACTTGTTGCGCAGATGGCGAAGACAACC
AAAGCTTTGCTACAGACAGCTGTCTTTGGAGGTGGTTCTGAAAGCACCAT
TGATATCGCTCCCGGCGTCGATTGCAGTGTCATCCTAGCAGTTGTTTTCG
GAATGGGGCAAGTTGGAGCTCATTGTAAGTTGCACTTTGATACATTCTGA
GTCACATTGTTGAAAGTAGTTACTAACTGTTGAAATGTTGCTTTCCTTTT
GCAGTCATGGGCGACGTATTTGAGAATTTCGTGAAGGATCCTTTGAAAGA
TGCGGCGGTTGATAGCGCAGTTGACGCGTCGGGTATGGGCGCAGTCGTGG
ATGGTTACAACGAGATGTCGAACGAGGCGTTTCATCAGGTTGGTTCCATT
GCACGAGTCGGGCGATTCATTCATAACAACTTCTTCAACTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:572719..573710+

>Ggra4466.t1 ID=Ggra4466.t1|Name=Ggra4466.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000898_pilon:572719..573710+ (Gracilaria gracilis GNS1m male)
ATGACGGCAGAGCTGAGCAAGTTGGCAAATGACCCGAACTTTGTTGTACA
ATTCGCCGTTGGCGACCCCATGCCCGAGCTTAAACCTCAATCTCGTGATT
CTGGTCTTAAGTTCTGCAGAATATATTTCGACACCCCGAAGCGCTACATC
TTAAAGAAGGCTCACATGTCGCGTGAGGACAACCGCATCTTCGACACGGA
CTCTGGCAAACTTGTGTACGTAAGTCACCATCCTGGAAAGAATCCGTATG
ACATGTTCGATCCTCTAGGTACCACAAACCAGGACATGAGGTACAGCGTG
GCTGGTGGAGAATGGGAATCAGTTTGTGATGTTTCTGGTCGAGGTCAGTA
CCGAAGCTTCAAAATAAGACCTAAGTCTCTCTCCCGGCATGGACGCCAGT
ATATAAAGCAAGGTGACCAAATCTTGTTCAACGTTGGGAAGATTGGAAAA
CTGAAAACTATGTCCATTAGGGACCACTTCATGGTCGCCGACAAAGACAA
TGCTGATCTAGTTTACAAGTGCGTGGCGGACGTTATGGGTCGAACTATTC
AAATCTACAACGCCGAAGAGGAACTTGTTGCGCAGATGGCGAAGACAACC
AAAGCTTTGCTACAGACAGCTGTCTTTGGAGGTGGTTCTGAAAGCACCAT
TGATATCGCTCCCGGCGTCGATTGCAGTGTCATCCTAGCAGTTGTTTTCG
GAATGGGGCAAGTTGGAGCTCATTTCATGGGCGACGTATTTGAGAATTTC
GTGAAGGATCCTTTGAAAGATGCGGCGGTTGATAGCGCAGTTGACGCGTC
GGGTATGGGCGCAGTCGTGGATGGTTACAACGAGATGTCGAACGAGGCGT
TTCATCAGGTTGGTTCCATTGCACGAGTCGGGCGATTCATTCATAACAAC
TTCTTCAACTAA
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