Ggra4462.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4462.t1
Unique Name	Ggra4462.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	549

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:562936..564582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705121.1
PFAMs	HGTP_anticodon,ProRS-C_1,WHEP-TRS,tRNA-synt_2b,tRNA_edit
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01881
KEGG Reaction	R03661
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
Evalue	1.15e-228
EggNOG OGs	COG0442@1\|root,KOG4163@2759\|Eukaryota
EC	6.1.1.15
Description	synthetase
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4462	Ggra4462	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 562936..564582 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4462.t1.start1	Ggra4462.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 562936..562938 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4462.t1.CDS1	Ggra4462.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 562936..564582 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4462.t1.exon1	Ggra4462.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 562936..564582 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4462.t1.stop1	Ggra4462.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 564580..564582 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4462.t1	Ggra4462.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 562936..564582 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:562936..564582+
coding sequence from alignment at tig00000898_pilon:562936..564582+

mRNA sequence

>Ggra4462.t1 ID=Ggra4462.t1|Name=Ggra4462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp
MSAFQIHIPVSPPRSLNRSVCRRRRAPIRNVIQNAGKAATNRKQKSTAIQ
SPSITPRDEDYSQWYLDVISAADLAESAPVKGCLVIKPHGYAIWELLRDK
LDAAIKQSGAKNAYFPLLIPQSFLSKEAEHVEGFAKECAVVTHHRLRADP
DAPPGTLQPDPDAELEDKLVVRPTSETIIWYMFGRWIQSYRDLPLMINQW
ANVVRWEMRTRPFLRTTEFLWQEGHTAHANECEAHDKAIEMIQVYRDIAE
NWLALPVVVGRKSPSERFAGAEETYTIEAMMQNGWALQAGTSHFLGQNFA
KAFDVQYKATEGTEEYVWATSWGMTTRMIGALIMTHSDDVGLVLPPTIAP
IQIVLVLIFKNENDQKVVNSFGEQVAQRLKAIGVRYEVDGRPNMRPGAKY
YEWERKGVPLRMEIGPKDAGKGAVFSAKRTGGKKWSIPVDENFEDRTLAA
LKDIQVEMLENARQRLSDRTIVPASYEEMKQSLEQGNDAHGFFLVPWKCD
DINEKKVKEETKATLRCYPITGQENLEGKTCIYSGEPATHMAIFARAY*

spliced messenger RNA

>Ggra4462.t1 ID=Ggra4462.t1|Name=Ggra4462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000898_pilon:562936..564582+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCTTTCAGATTCATATTCCAGTTTCCCCTCCCCGTTCTTTAAA
CCGCAGTGTCTGCCGTCGCCGTCGCGCACCCATACGAAACGTTATACAGA
ACGCAGGGAAGGCTGCAACCAACCGAAAGCAGAAATCTACAGCAATTCAG
TCTCCATCTATTACTCCGCGTGATGAGGACTACTCTCAGTGGTATCTCGA
TGTCATTTCGGCAGCCGATCTTGCTGAATCTGCTCCAGTAAAAGGCTGCC
TTGTTATTAAGCCTCATGGCTATGCTATATGGGAACTGCTTCGGGATAAG
CTAGACGCTGCTATTAAGCAGTCAGGAGCAAAGAACGCCTATTTCCCACT
CCTTATACCGCAGTCTTTTCTTTCAAAGGAGGCTGAGCACGTCGAAGGTT
TTGCAAAGGAATGTGCTGTGGTTACACATCACCGGTTACGTGCCGATCCA
GATGCGCCTCCTGGAACGTTGCAGCCAGACCCAGATGCTGAACTGGAAGA
TAAACTGGTCGTCAGACCAACGTCAGAGACTATAATATGGTATATGTTTG
GTCGTTGGATACAAAGTTATCGCGACCTTCCGCTTATGATAAATCAATGG
GCGAATGTTGTGCGATGGGAGATGCGCACTAGGCCATTTTTGCGGACGAC
AGAATTCCTCTGGCAGGAAGGTCACACTGCTCATGCTAATGAGTGCGAGG
CTCATGACAAAGCAATAGAAATGATTCAAGTCTATAGAGATATTGCAGAG
AATTGGTTGGCTTTGCCAGTCGTTGTGGGAAGAAAATCGCCTTCGGAGCG
ATTTGCTGGTGCGGAGGAAACATATACGATCGAGGCCATGATGCAAAACG
GGTGGGCTTTACAAGCGGGTACTTCCCATTTCCTTGGACAGAACTTTGCA
AAGGCTTTTGATGTTCAGTACAAAGCAACGGAGGGTACTGAGGAGTATGT
TTGGGCGACTAGCTGGGGAATGACGACCCGAATGATTGGTGCACTGATAA
TGACACATTCCGACGACGTGGGACTTGTACTACCGCCTACAATCGCACCT
ATTCAAATTGTTCTGGTTCTAATTTTTAAGAACGAGAATGACCAGAAGGT
CGTAAACTCGTTCGGAGAGCAAGTTGCCCAGCGTCTTAAAGCGATCGGAG
TCAGGTATGAAGTAGATGGTCGTCCAAACATGAGACCAGGTGCCAAGTAT
TATGAGTGGGAGAGAAAGGGAGTACCGCTTCGAATGGAAATTGGTCCCAA
GGATGCTGGCAAAGGGGCAGTTTTTTCGGCGAAACGAACCGGTGGTAAGA
AATGGTCTATCCCGGTTGATGAGAACTTTGAGGACAGGACGCTCGCAGCT
TTGAAAGATATCCAGGTAGAGATGCTTGAAAATGCACGACAACGGTTATC
AGATCGAACAATCGTGCCCGCCTCTTACGAAGAAATGAAGCAATCATTGG
AACAGGGAAATGATGCCCATGGCTTTTTCTTAGTTCCCTGGAAATGTGAT
GACATCAATGAAAAGAAGGTGAAGGAGGAGACAAAGGCTACCCTACGATG
TTACCCAATAACAGGCCAAGAGAACCTCGAAGGAAAGACATGCATTTACT
CCGGGGAGCCGGCAACCCATATGGCTATTTTTGCAAGAGCTTATTAA

protein sequence of Ggra4462.t1

>Ggra4462.t1 ID=Ggra4462.t1|Name=Ggra4462.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=549bp
MSAFQIHIPVSPPRSLNRSVCRRRRAPIRNVIQNAGKAATNRKQKSTAIQ
SPSITPRDEDYSQWYLDVISAADLAESAPVKGCLVIKPHGYAIWELLRDK
LDAAIKQSGAKNAYFPLLIPQSFLSKEAEHVEGFAKECAVVTHHRLRADP
DAPPGTLQPDPDAELEDKLVVRPTSETIIWYMFGRWIQSYRDLPLMINQW
ANVVRWEMRTRPFLRTTEFLWQEGHTAHANECEAHDKAIEMIQVYRDIAE
NWLALPVVVGRKSPSERFAGAEETYTIEAMMQNGWALQAGTSHFLGQNFA
KAFDVQYKATEGTEEYVWATSWGMTTRMIGALIMTHSDDVGLVLPPTIAP
IQIVLVLIFKNENDQKVVNSFGEQVAQRLKAIGVRYEVDGRPNMRPGAKY
YEWERKGVPLRMEIGPKDAGKGAVFSAKRTGGKKWSIPVDENFEDRTLAA
LKDIQVEMLENARQRLSDRTIVPASYEEMKQSLEQGNDAHGFFLVPWKCD
DINEKKVKEETKATLRCYPITGQENLEGKTCIYSGEPATHMAIFARAY*

mRNA from alignment at tig00000898_pilon:562936..564582+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4462.t1 ID=Ggra4462.t1|Name=Ggra4462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000898_pilon:562936..564582+ (Gracilaria gracilis GNS1m male)
ATGTCTGCCTTTCAGATTCATATTCCAGTTTCCCCTCCCCGTTCTTTAAA
CCGCAGTGTCTGCCGTCGCCGTCGCGCACCCATACGAAACGTTATACAGA
ACGCAGGGAAGGCTGCAACCAACCGAAAGCAGAAATCTACAGCAATTCAG
TCTCCATCTATTACTCCGCGTGATGAGGACTACTCTCAGTGGTATCTCGA
TGTCATTTCGGCAGCCGATCTTGCTGAATCTGCTCCAGTAAAAGGCTGCC
TTGTTATTAAGCCTCATGGCTATGCTATATGGGAACTGCTTCGGGATAAG
CTAGACGCTGCTATTAAGCAGTCAGGAGCAAAGAACGCCTATTTCCCACT
CCTTATACCGCAGTCTTTTCTTTCAAAGGAGGCTGAGCACGTCGAAGGTT
TTGCAAAGGAATGTGCTGTGGTTACACATCACCGGTTACGTGCCGATCCA
GATGCGCCTCCTGGAACGTTGCAGCCAGACCCAGATGCTGAACTGGAAGA
TAAACTGGTCGTCAGACCAACGTCAGAGACTATAATATGGTATATGTTTG
GTCGTTGGATACAAAGTTATCGCGACCTTCCGCTTATGATAAATCAATGG
GCGAATGTTGTGCGATGGGAGATGCGCACTAGGCCATTTTTGCGGACGAC
AGAATTCCTCTGGCAGGAAGGTCACACTGCTCATGCTAATGAGTGCGAGG
CTCATGACAAAGCAATAGAAATGATTCAAGTCTATAGAGATATTGCAGAG
AATTGGTTGGCTTTGCCAGTCGTTGTGGGAAGAAAATCGCCTTCGGAGCG
ATTTGCTGGTGCGGAGGAAACATATACGATCGAGGCCATGATGCAAAACG
GGTGGGCTTTACAAGCGGGTACTTCCCATTTCCTTGGACAGAACTTTGCA
AAGGCTTTTGATGTTCAGTACAAAGCAACGGAGGGTACTGAGGAGTATGT
TTGGGCGACTAGCTGGGGAATGACGACCCGAATGATTGGTGCACTGATAA
TGACACATTCCGACGACGTGGGACTTGTACTACCGCCTACAATCGCACCT
ATTCAAATTGTTCTGGTTCTAATTTTTAAGAACGAGAATGACCAGAAGGT
CGTAAACTCGTTCGGAGAGCAAGTTGCCCAGCGTCTTAAAGCGATCGGAG
TCAGGTATGAAGTAGATGGTCGTCCAAACATGAGACCAGGTGCCAAGTAT
TATGAGTGGGAGAGAAAGGGAGTACCGCTTCGAATGGAAATTGGTCCCAA
GGATGCTGGCAAAGGGGCAGTTTTTTCGGCGAAACGAACCGGTGGTAAGA
AATGGTCTATCCCGGTTGATGAGAACTTTGAGGACAGGACGCTCGCAGCT
TTGAAAGATATCCAGGTAGAGATGCTTGAAAATGCACGACAACGGTTATC
AGATCGAACAATCGTGCCCGCCTCTTACGAAGAAATGAAGCAATCATTGG
AACAGGGAAATGATGCCCATGGCTTTTTCTTAGTTCCCTGGAAATGTGAT
GACATCAATGAAAAGAAGGTGAAGGAGGAGACAAAGGCTACCCTACGATG
TTACCCAATAACAGGCCAAGAGAACCTCGAAGGAAAGACATGCATTTACT
CCGGGGAGCCGGCAACCCATATGGCTATTTTTGCAAGAGCTTATTAA

Coding sequence (CDS) from alignment at tig00000898_pilon:562936..564582+

>Ggra4462.t1 ID=Ggra4462.t1|Name=Ggra4462.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1647bp|location=Sequence derived from alignment at tig00000898_pilon:562936..564582+ (Gracilaria gracilis GNS1m male)
ATGTCTGCCTTTCAGATTCATATTCCAGTTTCCCCTCCCCGTTCTTTAAA
CCGCAGTGTCTGCCGTCGCCGTCGCGCACCCATACGAAACGTTATACAGA
ACGCAGGGAAGGCTGCAACCAACCGAAAGCAGAAATCTACAGCAATTCAG
TCTCCATCTATTACTCCGCGTGATGAGGACTACTCTCAGTGGTATCTCGA
TGTCATTTCGGCAGCCGATCTTGCTGAATCTGCTCCAGTAAAAGGCTGCC
TTGTTATTAAGCCTCATGGCTATGCTATATGGGAACTGCTTCGGGATAAG
CTAGACGCTGCTATTAAGCAGTCAGGAGCAAAGAACGCCTATTTCCCACT
CCTTATACCGCAGTCTTTTCTTTCAAAGGAGGCTGAGCACGTCGAAGGTT
TTGCAAAGGAATGTGCTGTGGTTACACATCACCGGTTACGTGCCGATCCA
GATGCGCCTCCTGGAACGTTGCAGCCAGACCCAGATGCTGAACTGGAAGA
TAAACTGGTCGTCAGACCAACGTCAGAGACTATAATATGGTATATGTTTG
GTCGTTGGATACAAAGTTATCGCGACCTTCCGCTTATGATAAATCAATGG
GCGAATGTTGTGCGATGGGAGATGCGCACTAGGCCATTTTTGCGGACGAC
AGAATTCCTCTGGCAGGAAGGTCACACTGCTCATGCTAATGAGTGCGAGG
CTCATGACAAAGCAATAGAAATGATTCAAGTCTATAGAGATATTGCAGAG
AATTGGTTGGCTTTGCCAGTCGTTGTGGGAAGAAAATCGCCTTCGGAGCG
ATTTGCTGGTGCGGAGGAAACATATACGATCGAGGCCATGATGCAAAACG
GGTGGGCTTTACAAGCGGGTACTTCCCATTTCCTTGGACAGAACTTTGCA
AAGGCTTTTGATGTTCAGTACAAAGCAACGGAGGGTACTGAGGAGTATGT
TTGGGCGACTAGCTGGGGAATGACGACCCGAATGATTGGTGCACTGATAA
TGACACATTCCGACGACGTGGGACTTGTACTACCGCCTACAATCGCACCT
ATTCAAATTGTTCTGGTTCTAATTTTTAAGAACGAGAATGACCAGAAGGT
CGTAAACTCGTTCGGAGAGCAAGTTGCCCAGCGTCTTAAAGCGATCGGAG
TCAGGTATGAAGTAGATGGTCGTCCAAACATGAGACCAGGTGCCAAGTAT
TATGAGTGGGAGAGAAAGGGAGTACCGCTTCGAATGGAAATTGGTCCCAA
GGATGCTGGCAAAGGGGCAGTTTTTTCGGCGAAACGAACCGGTGGTAAGA
AATGGTCTATCCCGGTTGATGAGAACTTTGAGGACAGGACGCTCGCAGCT
TTGAAAGATATCCAGGTAGAGATGCTTGAAAATGCACGACAACGGTTATC
AGATCGAACAATCGTGCCCGCCTCTTACGAAGAAATGAAGCAATCATTGG
AACAGGGAAATGATGCCCATGGCTTTTTCTTAGTTCCCTGGAAATGTGAT
GACATCAATGAAAAGAAGGTGAAGGAGGAGACAAAGGCTACCCTACGATG
TTACCCAATAACAGGCCAAGAGAACCTCGAAGGAAAGACATGCATTTACT
CCGGGGAGCCGGCAACCCATATGGCTATTTTTGCAAGAGCTTATTAA