Ggra4458.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4458.t1
Unique NameGgra4458.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:556549..557898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4458Ggra4458Gracilaria gracilis GNS1m malegenetig00000898_pilon 556549..557898 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4458.t1.stop1Ggra4458.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 556549..556551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4458.t1.CDS1Ggra4458.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 556549..557898 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4458.t1.exon1Ggra4458.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 556549..557898 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4458.t1.start1Ggra4458.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 557896..557898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4458.t1Ggra4458.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 556549..557898 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4458.t1 ID=Ggra4458.t1|Name=Ggra4458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp
MVDTMTVLGAAATAKLTGDRLVREFVEYVRRKSRLRQHATRPQPSPRRTR
ERLSRSMKLSATSRSSASRRRPLSRRSKKLSLLTDADLEAELESRRRRRA
KERSQFSRAMPSDKLAALESELFRLRREISRIDAPTALSRSPALRPVPSN
VPRLSAFSSNTSLSPPSQPTPAMPTTPLPTSSPALASAAPPTVRRGGGPP
PPPPPPPPPPPPAPDADGSADPQRQKREKLERQKRREAKKKEREQAQSQK
KLTLADIIRTAGPDPMSRLKPASKKAADEEQEQYEKELKEREDREKREEQ
QRVEQEKKALAEMGKRVSPSPPPRDNDNSSAEKTPGPKEASHAEAKTVTE
NKQSQKQPSKKDGEQEELSGVSSENGDTVQEKQRNSGKGEKKNPSVKKEK
DIRISSVKTENVGSISKSGTETTDKATKEKESSRAVTSPKSKTTANKPP*
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spliced messenger RNA

>Ggra4458.t1 ID=Ggra4458.t1|Name=Ggra4458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000898_pilon:556549..557898- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGACACAATGACAGTTCTGGGCGCCGCCGCCACGGCCAAGCTCAC
CGGCGACCGTCTGGTGCGTGAATTCGTCGAGTACGTTCGCCGCAAATCAC
GCCTCCGCCAACATGCCACGCGCCCGCAGCCGTCCCCGCGACGCACGCGT
GAGCGTCTCTCCCGTTCAATGAAACTATCCGCAACATCCCGCTCTTCTGC
CAGCAGGCGGCGCCCGCTTTCCCGTCGTTCGAAGAAGCTCTCTTTGCTCA
CGGACGCCGACCTCGAGGCAGAGCTTGAAAGCCGCCGTCGTCGTCGTGCA
AAGGAGCGTTCTCAATTCTCGCGCGCCATGCCGTCTGACAAGCTTGCAGC
TTTGGAGTCGGAACTGTTTCGACTGCGACGTGAGATTTCTCGTATTGACG
CTCCCACTGCTTTGTCTCGCTCGCCTGCATTGCGTCCCGTTCCGAGCAAC
GTTCCGCGTCTTTCAGCCTTCAGCTCAAATACCTCTCTGTCTCCGCCGTC
ACAACCCACCCCAGCGATGCCGACTACACCTCTCCCGACATCCTCACCGG
CGCTGGCTTCTGCTGCGCCTCCCACGGTTCGTCGTGGCGGGGGTCCCCCC
CCACCTCCGCCCCCACCTCCGCCCCCACCGCCACCTGCGCCCGATGCTGA
CGGTTCCGCGGACCCACAACGCCAGAAACGCGAGAAGTTGGAGCGACAAA
AGCGCCGCGAAGCAAAGAAGAAGGAACGCGAGCAGGCGCAGTCTCAGAAG
AAACTCACGCTCGCGGATATTATTCGCACGGCTGGACCGGATCCTATGAG
CCGCCTCAAACCCGCATCAAAGAAAGCCGCCGATGAAGAGCAAGAGCAGT
ATGAGAAAGAATTGAAGGAAAGAGAGGATAGAGAAAAGCGAGAGGAGCAG
CAGCGAGTTGAGCAGGAGAAAAAAGCGCTCGCGGAAATGGGTAAGCGAGT
ATCCCCGAGTCCACCTCCACGAGATAATGACAACTCGTCAGCGGAGAAGA
CGCCCGGTCCGAAAGAAGCGTCTCATGCAGAGGCGAAAACTGTCACTGAA
AACAAACAAAGCCAGAAACAGCCGTCGAAGAAAGACGGAGAACAGGAAGA
ACTTTCGGGTGTTTCCTCAGAAAATGGAGACACCGTGCAAGAAAAGCAGC
GAAATTCCGGTAAGGGGGAGAAAAAGAATCCGAGTGTGAAAAAGGAGAAA
GATATCCGTATTTCCTCGGTGAAAACGGAAAACGTCGGCTCCATTTCCAA
GTCAGGGACTGAAACCACAGATAAGGCAACAAAGGAAAAGGAAAGCTCGA
GGGCTGTAACATCTCCGAAAAGCAAGACAACTGCCAACAAACCCCCGTAA
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protein sequence of Ggra4458.t1

>Ggra4458.t1 ID=Ggra4458.t1|Name=Ggra4458.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MVDTMTVLGAAATAKLTGDRLVREFVEYVRRKSRLRQHATRPQPSPRRTR
ERLSRSMKLSATSRSSASRRRPLSRRSKKLSLLTDADLEAELESRRRRRA
KERSQFSRAMPSDKLAALESELFRLRREISRIDAPTALSRSPALRPVPSN
VPRLSAFSSNTSLSPPSQPTPAMPTTPLPTSSPALASAAPPTVRRGGGPP
PPPPPPPPPPPPAPDADGSADPQRQKREKLERQKRREAKKKEREQAQSQK
KLTLADIIRTAGPDPMSRLKPASKKAADEEQEQYEKELKEREDREKREEQ
QRVEQEKKALAEMGKRVSPSPPPRDNDNSSAEKTPGPKEASHAEAKTVTE
NKQSQKQPSKKDGEQEELSGVSSENGDTVQEKQRNSGKGEKKNPSVKKEK
DIRISSVKTENVGSISKSGTETTDKATKEKESSRAVTSPKSKTTANKPP*
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mRNA from alignment at tig00000898_pilon:556549..557898-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4458.t1 ID=Ggra4458.t1|Name=Ggra4458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000898_pilon:556549..557898- (Gracilaria gracilis GNS1m male)
ATGGTCGACACAATGACAGTTCTGGGCGCCGCCGCCACGGCCAAGCTCAC
CGGCGACCGTCTGGTGCGTGAATTCGTCGAGTACGTTCGCCGCAAATCAC
GCCTCCGCCAACATGCCACGCGCCCGCAGCCGTCCCCGCGACGCACGCGT
GAGCGTCTCTCCCGTTCAATGAAACTATCCGCAACATCCCGCTCTTCTGC
CAGCAGGCGGCGCCCGCTTTCCCGTCGTTCGAAGAAGCTCTCTTTGCTCA
CGGACGCCGACCTCGAGGCAGAGCTTGAAAGCCGCCGTCGTCGTCGTGCA
AAGGAGCGTTCTCAATTCTCGCGCGCCATGCCGTCTGACAAGCTTGCAGC
TTTGGAGTCGGAACTGTTTCGACTGCGACGTGAGATTTCTCGTATTGACG
CTCCCACTGCTTTGTCTCGCTCGCCTGCATTGCGTCCCGTTCCGAGCAAC
GTTCCGCGTCTTTCAGCCTTCAGCTCAAATACCTCTCTGTCTCCGCCGTC
ACAACCCACCCCAGCGATGCCGACTACACCTCTCCCGACATCCTCACCGG
CGCTGGCTTCTGCTGCGCCTCCCACGGTTCGTCGTGGCGGGGGTCCCCCC
CCACCTCCGCCCCCACCTCCGCCCCCACCGCCACCTGCGCCCGATGCTGA
CGGTTCCGCGGACCCACAACGCCAGAAACGCGAGAAGTTGGAGCGACAAA
AGCGCCGCGAAGCAAAGAAGAAGGAACGCGAGCAGGCGCAGTCTCAGAAG
AAACTCACGCTCGCGGATATTATTCGCACGGCTGGACCGGATCCTATGAG
CCGCCTCAAACCCGCATCAAAGAAAGCCGCCGATGAAGAGCAAGAGCAGT
ATGAGAAAGAATTGAAGGAAAGAGAGGATAGAGAAAAGCGAGAGGAGCAG
CAGCGAGTTGAGCAGGAGAAAAAAGCGCTCGCGGAAATGGGTAAGCGAGT
ATCCCCGAGTCCACCTCCACGAGATAATGACAACTCGTCAGCGGAGAAGA
CGCCCGGTCCGAAAGAAGCGTCTCATGCAGAGGCGAAAACTGTCACTGAA
AACAAACAAAGCCAGAAACAGCCGTCGAAGAAAGACGGAGAACAGGAAGA
ACTTTCGGGTGTTTCCTCAGAAAATGGAGACACCGTGCAAGAAAAGCAGC
GAAATTCCGGTAAGGGGGAGAAAAAGAATCCGAGTGTGAAAAAGGAGAAA
GATATCCGTATTTCCTCGGTGAAAACGGAAAACGTCGGCTCCATTTCCAA
GTCAGGGACTGAAACCACAGATAAGGCAACAAAGGAAAAGGAAAGCTCGA
GGGCTGTAACATCTCCGAAAAGCAAGACAACTGCCAACAAACCCCCGTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:556549..557898-

>Ggra4458.t1 ID=Ggra4458.t1|Name=Ggra4458.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000898_pilon:556549..557898- (Gracilaria gracilis GNS1m male)
ATGGTCGACACAATGACAGTTCTGGGCGCCGCCGCCACGGCCAAGCTCAC
CGGCGACCGTCTGGTGCGTGAATTCGTCGAGTACGTTCGCCGCAAATCAC
GCCTCCGCCAACATGCCACGCGCCCGCAGCCGTCCCCGCGACGCACGCGT
GAGCGTCTCTCCCGTTCAATGAAACTATCCGCAACATCCCGCTCTTCTGC
CAGCAGGCGGCGCCCGCTTTCCCGTCGTTCGAAGAAGCTCTCTTTGCTCA
CGGACGCCGACCTCGAGGCAGAGCTTGAAAGCCGCCGTCGTCGTCGTGCA
AAGGAGCGTTCTCAATTCTCGCGCGCCATGCCGTCTGACAAGCTTGCAGC
TTTGGAGTCGGAACTGTTTCGACTGCGACGTGAGATTTCTCGTATTGACG
CTCCCACTGCTTTGTCTCGCTCGCCTGCATTGCGTCCCGTTCCGAGCAAC
GTTCCGCGTCTTTCAGCCTTCAGCTCAAATACCTCTCTGTCTCCGCCGTC
ACAACCCACCCCAGCGATGCCGACTACACCTCTCCCGACATCCTCACCGG
CGCTGGCTTCTGCTGCGCCTCCCACGGTTCGTCGTGGCGGGGGTCCCCCC
CCACCTCCGCCCCCACCTCCGCCCCCACCGCCACCTGCGCCCGATGCTGA
CGGTTCCGCGGACCCACAACGCCAGAAACGCGAGAAGTTGGAGCGACAAA
AGCGCCGCGAAGCAAAGAAGAAGGAACGCGAGCAGGCGCAGTCTCAGAAG
AAACTCACGCTCGCGGATATTATTCGCACGGCTGGACCGGATCCTATGAG
CCGCCTCAAACCCGCATCAAAGAAAGCCGCCGATGAAGAGCAAGAGCAGT
ATGAGAAAGAATTGAAGGAAAGAGAGGATAGAGAAAAGCGAGAGGAGCAG
CAGCGAGTTGAGCAGGAGAAAAAAGCGCTCGCGGAAATGGGTAAGCGAGT
ATCCCCGAGTCCACCTCCACGAGATAATGACAACTCGTCAGCGGAGAAGA
CGCCCGGTCCGAAAGAAGCGTCTCATGCAGAGGCGAAAACTGTCACTGAA
AACAAACAAAGCCAGAAACAGCCGTCGAAGAAAGACGGAGAACAGGAAGA
ACTTTCGGGTGTTTCCTCAGAAAATGGAGACACCGTGCAAGAAAAGCAGC
GAAATTCCGGTAAGGGGGAGAAAAAGAATCCGAGTGTGAAAAAGGAGAAA
GATATCCGTATTTCCTCGGTGAAAACGGAAAACGTCGGCTCCATTTCCAA
GTCAGGGACTGAAACCACAGATAAGGCAACAAAGGAAAAGGAAAGCTCGA
GGGCTGTAACATCTCCGAAAAGCAAGACAACTGCCAACAAACCCCCGTAA
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