Ggra4457.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4457.t1
Unique NameGgra4457.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:553044..554222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5286.M7WN42
Preferred nameCET1
PFAMsmRNA_triPase
Max annot lvl4751|Fungi
KEGG rclassRC00002
KEGG koko:K01098
KEGG ReactionR10814
GOsGO:0003674,GO:0003824,GO:0004651,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006355,GO:0006357,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009452,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031533,GO:0032784,GO:0032786,GO:0032879,GO:0032880,GO:0032968,GO:0032991,GO:0034243,GO:0034641,GO:0034708,GO:0035690,GO:0036260,GO:0042221,GO:0042493,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070887,GO:0071704,GO:0080090,GO:0090304,GO:0098501,GO:0098507,GO:0098518,GO:1900180,GO:1900182,GO:1901360,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1990234,GO:2000112,GO:2001141
Evalue6.2e-21
EggNOG OGs2AM1P@1|root,2RZAX@2759|Eukaryota,39XKZ@33154|Opisthokonta,3NXVE@4751|Fungi,3V0VE@5204|Basidiomycota,2YE9G@29000|Pucciniomycotina
DescriptionmRNA capping enzyme, beta chain
COG categoryS
BRITEko00000,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4457Ggra4457Gracilaria gracilis GNS1m malegenetig00000898_pilon 553044..554222 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4457.t1.start1Ggra4457.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 553044..553046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4457.t1.CDS1Ggra4457.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 553044..554222 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4457.t1.exon1Ggra4457.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 553044..554222 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4457.t1.stop1Ggra4457.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 554220..554222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4457.t1Ggra4457.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 553044..554222 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4457.t1 ID=Ggra4457.t1|Name=Ggra4457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MLASSCCLTPSFQTTHPSPFFSQLLAKYSLPVVLNNMVYDPFGSEEDNAE
KASVRRMVSVRRPPICDIQLTSLEWGVPESRKRTRTEPNLPNEQSHIRSA
PKPIQTTKSTDLSEKRETIRYVEKIVYEEPTTILGVPPVVDDRIRHVVDF
ILRNVKSDKVEVEVKLGLLIAKDSGARAINVVPVKCETSINPENNHDTRF
ESNVGEKVFCNLNKALNKRVELTERETKNKVHYTRTRHLDVYWPGKIRET
KQIRENPDGSEYYETIRVQSKTRLGDMNVMCPMNLLDMRYSASLEEDASI
PPNSTPLRQRMKDRISYKYEYLSVDITCVTMESLSAQTESQRTFEVEVEI
DPTANLFQEVNKYQQADGSSKLFDIATCLVNTVRILQEAEHI*
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spliced messenger RNA

>Ggra4457.t1 ID=Ggra4457.t1|Name=Ggra4457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000898_pilon:553044..554222+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCTTCTTCATGCTGCCTTACGCCTTCGTTCCAAACCACGCACCC
TTCACCCTTCTTTTCGCAACTCCTCGCCAAATATAGCCTCCCAGTTGTGC
TCAATAACATGGTGTACGACCCATTTGGTTCTGAGGAGGACAACGCCGAA
AAAGCTTCAGTGCGGAGAATGGTATCCGTCCGACGCCCCCCAATATGCGA
CATACAGCTTACTTCTTTGGAATGGGGTGTACCAGAGTCTCGTAAGCGAA
CCCGCACTGAACCGAATCTTCCAAACGAACAGAGTCATATCAGATCCGCG
CCTAAGCCCATCCAGACGACGAAGTCTACGGACCTATCAGAGAAGCGAGA
AACTATCAGATATGTTGAAAAGATTGTTTATGAAGAACCTACAACGATCC
TTGGAGTACCTCCTGTGGTCGATGATCGCATTCGTCATGTTGTAGACTTC
ATTTTGAGGAATGTCAAGAGTGATAAGGTAGAGGTTGAGGTCAAGCTTGG
CCTATTGATTGCAAAAGACAGCGGTGCTCGTGCTATTAATGTTGTGCCAG
TGAAGTGTGAGACTTCGATAAACCCGGAGAATAACCATGACACCCGGTTT
GAGAGTAATGTGGGAGAAAAAGTGTTCTGCAACCTTAATAAAGCTCTCAA
CAAGAGAGTTGAACTCACAGAAAGAGAAACCAAGAACAAGGTGCACtaca
cccgtacccgacatcttgacgtgtactggccaggaaaaatacgagaaacA
AAGCAGATACGAGAGAATCCAGATGGATCAGAGTACTATGAAACCATTCG
CGTCCAATCCaaaactcgcctgggtgatatgaacgtcatgtgccccatga
atttactcgacatgagatactctgCGAGCCTTGAAGAAGATGCGAGTATA
CCACCGAACAGCACACCTCTGAGACAAAGAATGAAAGATAGAATATCTTA
CAAGTATGAGTACTTAAGCGTTGATATAACTTGCGTAACTATGGAATCTT
TGAGTGCCCAGACCGAAAGTCAGAGGACTTTCGAAGTTGAGGTGGAAATT
GATCCAACGGCGAATCTCTTCCAGGAAGTTAATAAGTACCAGCAGGCTGA
TGGTTCTTCAAAACTGTTCGACATCGCCACATGTCTGGTCAACACCGTAC
GCATTCTACAAGAAGCAGAACATATATAA
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protein sequence of Ggra4457.t1

>Ggra4457.t1 ID=Ggra4457.t1|Name=Ggra4457.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MLASSCCLTPSFQTTHPSPFFSQLLAKYSLPVVLNNMVYDPFGSEEDNAE
KASVRRMVSVRRPPICDIQLTSLEWGVPESRKRTRTEPNLPNEQSHIRSA
PKPIQTTKSTDLSEKRETIRYVEKIVYEEPTTILGVPPVVDDRIRHVVDF
ILRNVKSDKVEVEVKLGLLIAKDSGARAINVVPVKCETSINPENNHDTRF
ESNVGEKVFCNLNKALNKRVELTERETKNKVHYTRTRHLDVYWPGKIRET
KQIRENPDGSEYYETIRVQSKTRLGDMNVMCPMNLLDMRYSASLEEDASI
PPNSTPLRQRMKDRISYKYEYLSVDITCVTMESLSAQTESQRTFEVEVEI
DPTANLFQEVNKYQQADGSSKLFDIATCLVNTVRILQEAEHI*
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mRNA from alignment at tig00000898_pilon:553044..554222+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4457.t1 ID=Ggra4457.t1|Name=Ggra4457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000898_pilon:553044..554222+ (Gracilaria gracilis GNS1m male)
ATGCTGGCTTCTTCATGCTGCCTTACGCCTTCGTTCCAAACCACGCACCC
TTCACCCTTCTTTTCGCAACTCCTCGCCAAATATAGCCTCCCAGTTGTGC
TCAATAACATGGTGTACGACCCATTTGGTTCTGAGGAGGACAACGCCGAA
AAAGCTTCAGTGCGGAGAATGGTATCCGTCCGACGCCCCCCAATATGCGA
CATACAGCTTACTTCTTTGGAATGGGGTGTACCAGAGTCTCGTAAGCGAA
CCCGCACTGAACCGAATCTTCCAAACGAACAGAGTCATATCAGATCCGCG
CCTAAGCCCATCCAGACGACGAAGTCTACGGACCTATCAGAGAAGCGAGA
AACTATCAGATATGTTGAAAAGATTGTTTATGAAGAACCTACAACGATCC
TTGGAGTACCTCCTGTGGTCGATGATCGCATTCGTCATGTTGTAGACTTC
ATTTTGAGGAATGTCAAGAGTGATAAGGTAGAGGTTGAGGTCAAGCTTGG
CCTATTGATTGCAAAAGACAGCGGTGCTCGTGCTATTAATGTTGTGCCAG
TGAAGTGTGAGACTTCGATAAACCCGGAGAATAACCATGACACCCGGTTT
GAGAGTAATGTGGGAGAAAAAGTGTTCTGCAACCTTAATAAAGCTCTCAA
CAAGAGAGTTGAACTCACAGAAAGAGAAACCAAGAACAAGGTGCACtaca
cccgtacccgacatcttgacgtgtactggccaggaaaaatacgagaaacA
AAGCAGATACGAGAGAATCCAGATGGATCAGAGTACTATGAAACCATTCG
CGTCCAATCCaaaactcgcctgggtgatatgaacgtcatgtgccccatga
atttactcgacatgagatactctgCGAGCCTTGAAGAAGATGCGAGTATA
CCACCGAACAGCACACCTCTGAGACAAAGAATGAAAGATAGAATATCTTA
CAAGTATGAGTACTTAAGCGTTGATATAACTTGCGTAACTATGGAATCTT
TGAGTGCCCAGACCGAAAGTCAGAGGACTTTCGAAGTTGAGGTGGAAATT
GATCCAACGGCGAATCTCTTCCAGGAAGTTAATAAGTACCAGCAGGCTGA
TGGTTCTTCAAAACTGTTCGACATCGCCACATGTCTGGTCAACACCGTAC
GCATTCTACAAGAAGCAGAACATATATAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:553044..554222+

>Ggra4457.t1 ID=Ggra4457.t1|Name=Ggra4457.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000898_pilon:553044..554222+ (Gracilaria gracilis GNS1m male)
ATGCTGGCTTCTTCATGCTGCCTTACGCCTTCGTTCCAAACCACGCACCC
TTCACCCTTCTTTTCGCAACTCCTCGCCAAATATAGCCTCCCAGTTGTGC
TCAATAACATGGTGTACGACCCATTTGGTTCTGAGGAGGACAACGCCGAA
AAAGCTTCAGTGCGGAGAATGGTATCCGTCCGACGCCCCCCAATATGCGA
CATACAGCTTACTTCTTTGGAATGGGGTGTACCAGAGTCTCGTAAGCGAA
CCCGCACTGAACCGAATCTTCCAAACGAACAGAGTCATATCAGATCCGCG
CCTAAGCCCATCCAGACGACGAAGTCTACGGACCTATCAGAGAAGCGAGA
AACTATCAGATATGTTGAAAAGATTGTTTATGAAGAACCTACAACGATCC
TTGGAGTACCTCCTGTGGTCGATGATCGCATTCGTCATGTTGTAGACTTC
ATTTTGAGGAATGTCAAGAGTGATAAGGTAGAGGTTGAGGTCAAGCTTGG
CCTATTGATTGCAAAAGACAGCGGTGCTCGTGCTATTAATGTTGTGCCAG
TGAAGTGTGAGACTTCGATAAACCCGGAGAATAACCATGACACCCGGTTT
GAGAGTAATGTGGGAGAAAAAGTGTTCTGCAACCTTAATAAAGCTCTCAA
CAAGAGAGTTGAACTCACAGAAAGAGAAACCAAGAACAAGGTGCACtaca
cccgtacccgacatcttgacgtgtactggccaggaaaaatacgagaaacA
AAGCAGATACGAGAGAATCCAGATGGATCAGAGTACTATGAAACCATTCG
CGTCCAATCCaaaactcgcctgggtgatatgaacgtcatgtgccccatga
atttactcgacatgagatactctgCGAGCCTTGAAGAAGATGCGAGTATA
CCACCGAACAGCACACCTCTGAGACAAAGAATGAAAGATAGAATATCTTA
CAAGTATGAGTACTTAAGCGTTGATATAACTTGCGTAACTATGGAATCTT
TGAGTGCCCAGACCGAAAGTCAGAGGACTTTCGAAGTTGAGGTGGAAATT
GATCCAACGGCGAATCTCTTCCAGGAAGTTAATAAGTACCAGCAGGCTGA
TGGTTCTTCAAAACTGTTCGACATCGCCACATGTCTGGTCAACACCGTAC
GCATTCTACAAGAAGCAGAACATATATAA
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