Ggra4456.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4456.t1
Unique NameGgra4456.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:551536..552561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707988.1
Preferred nameCERS5
PFAMsHomeobox,TRAM_LAG1_CLN8
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00064
KEGG koko:K04710
KEGG ReactionR01496,R06517
KEGG Pathwayko00600,ko01100,ko04071,map00600,map01100,map04071
KEGG ModuleM00094,M00099
GOsGO:0000981,GO:0003674,GO:0003700,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005783,GO:0005789,GO:0006355,GO:0006357,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006643,GO:0006665,GO:0006672,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007568,GO:0008150,GO:0008152,GO:0008285,GO:0008544,GO:0008610,GO:0009058,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009913,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010624,GO:0010626,GO:0010628,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0014013,GO:0014014,GO:0016020,GO:0016021,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019216,GO:0019219,GO:0019222,GO:0019866,GO:0022008,GO:0023052,GO:0030148,GO:0030154,GO:0030216,GO:0030334,GO:0030336,GO:0030424,GO:0030855,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031345,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032879,GO:0032933,GO:0033554,GO:0034641,GO:0040012,GO:0040013,GO:0042127,GO:0042175,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043588,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045833,GO:0045834,GO:0045893,GO:0045935,GO:0045944,GO:0046467,GO:0046486,GO:0046513,GO:0046889,GO:0046890,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050291,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050995,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051270,GO:0051271,GO:0051716,GO:0051960,GO:0051961,GO:0060251,GO:0060253,GO:0060255,GO:0060284,GO:0060429,GO:0065007,GO:0070570,GO:0070571,GO:0071501,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0098827,GO:0120025,GO:0120035,GO:0140110,GO:1900147,GO:1900148,GO:1901564,GO:1901566,GO:1901576,GO:1902680,GO:1903034,GO:1903035,GO:1903506,GO:1903508,GO:1903975,GO:1903976,GO:1905044,GO:1905045,GO:2000026,GO:2000112,GO:2000145,GO:2000146,GO:2001141
Evalue4.57e-62
EggNOG OGsCOG5058@1|root,KOG1607@2759|Eukaryota
EC2.3.1.24
Descriptionsphingosine N-acyltransferase activity
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4456Ggra4456Gracilaria gracilis GNS1m malegenetig00000898_pilon 551536..552561 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4456.t1.stop1Ggra4456.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 551536..551538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4456.t1.CDS1Ggra4456.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 551536..552561 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4456.t1.exon1Ggra4456.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 551536..552561 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4456.t1.start1Ggra4456.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 552559..552561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4456.t1Ggra4456.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 551536..552561 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4456.t1 ID=Ggra4456.t1|Name=Ggra4456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MSFFPQEQCCRTGGLMRLPLFLKDFVDAIKHQQQFRTPENPSLLNPNRSL
EDLYTVIILSIVFLTLRLALDKFLFAIIFRSYSPKLQRKLSENLFYSVYY
IAAFSFFMFKVTPSMEWEVNLLSNKSHVVKDFLFPFPPPMTPSEHQYYSQ
AGAFYVAASVFLICFDLRRADFAELCLHHFVTLGMVVMSYLYSYVRVGIV
ILALHDVGDIFLYSAKFLHYLGLEGLDTAVFSIFAVTFYVTRLLMFPRLV
HLICVETLQTVVADASFNKWAMYYDTYILHYVFFVAFAGILLVLHCFWFT
LILKMIYRELFEGKKISEHGDIRSDGEDNEEMTEFEKDDGN*
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spliced messenger RNA

>Ggra4456.t1 ID=Ggra4456.t1|Name=Ggra4456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000898_pilon:551536..552561- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTCTTCCCACAAGAACAATGCTGTCGAACCGGCGGTTTAATGCG
TCTACCCTTGTTTCTGAAGGATTTTGTGGACGCTATCAAGCACCAACAAC
AGTTTCGCACGCCTGAAAACCCCTCTCTTTTGAATCCGAATCGCTCACTT
GAAGATCTGTATACAGTCATTATCCTCAGCATTGTGTTTCTGACGCTTCG
GTTGGCGCTTGATAAGTTTTTGTTTGCCATCATTTTTCGTTCTTATTCCC
CGAAGCTGCAACGAAAACTGTCAGAGAACCTGTTCTACTCTGTATATTAC
ATCGCAGCATTTTCGTTCTTTATGTTCAAAGTCACCCCTTCAATGGAATG
GGAAGTCAATCTCCTTTCAAACAAATCTCATGTGGTCAAGGACTTCTTGT
TTCCGTTTCCCCCGCCCATGACGCCAAGCGAGCACCAATACTACAGCCAA
GCAGGAGCGTTCTATGTTGCAGCCAGCGTGTTTTTGATATGCTTCGATCT
CCGGCGAGCTGATTTCGCGGAGTTATGTCTGCACCACTTCGTAACGCTTG
GAATGGTGGTTATGAGCTATTTGTACAGCTATGTACGCGTTGGTATTGTG
ATTCTTGCTTTGCATGATGTGGGTGACATTTTTCTTTACTCGGCAAAGTT
CTTGCACTATTTGGGACTGGAGGGCTTGGACACCGCTGTGTTTTCGATTT
TTGCGGTTACGTTCTATGTGACGAGGCTTCTAATGTTCCCCAGACTTGTA
CATTTGATCTGCGTCGAGACTTTGCAAACCGTCGTGGCCGACGCTTCTTT
TAATAAGTGGGCAATGTACTATGATACGTACATTTTGCACTACGTATTCT
TTGTAGCGTTTGCTGGTATCTTGCTGGTGTTGCATTGTTTCTGGTTTACG
TTGATTTTGAAAATGATTTATCGAGAACTGTTCGAGGGTAAGAAGATTTC
TGAACATGGTGATATTCGAAGTGATGGAGAAGATAATGAAGAGATGACAG
AATTTGAAAAGGACGATGGTAACTAG
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protein sequence of Ggra4456.t1

>Ggra4456.t1 ID=Ggra4456.t1|Name=Ggra4456.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MSFFPQEQCCRTGGLMRLPLFLKDFVDAIKHQQQFRTPENPSLLNPNRSL
EDLYTVIILSIVFLTLRLALDKFLFAIIFRSYSPKLQRKLSENLFYSVYY
IAAFSFFMFKVTPSMEWEVNLLSNKSHVVKDFLFPFPPPMTPSEHQYYSQ
AGAFYVAASVFLICFDLRRADFAELCLHHFVTLGMVVMSYLYSYVRVGIV
ILALHDVGDIFLYSAKFLHYLGLEGLDTAVFSIFAVTFYVTRLLMFPRLV
HLICVETLQTVVADASFNKWAMYYDTYILHYVFFVAFAGILLVLHCFWFT
LILKMIYRELFEGKKISEHGDIRSDGEDNEEMTEFEKDDGN*
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mRNA from alignment at tig00000898_pilon:551536..552561-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4456.t1 ID=Ggra4456.t1|Name=Ggra4456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000898_pilon:551536..552561- (Gracilaria gracilis GNS1m male)
ATGAGCTTCTTCCCACAAGAACAATGCTGTCGAACCGGCGGTTTAATGCG
TCTACCCTTGTTTCTGAAGGATTTTGTGGACGCTATCAAGCACCAACAAC
AGTTTCGCACGCCTGAAAACCCCTCTCTTTTGAATCCGAATCGCTCACTT
GAAGATCTGTATACAGTCATTATCCTCAGCATTGTGTTTCTGACGCTTCG
GTTGGCGCTTGATAAGTTTTTGTTTGCCATCATTTTTCGTTCTTATTCCC
CGAAGCTGCAACGAAAACTGTCAGAGAACCTGTTCTACTCTGTATATTAC
ATCGCAGCATTTTCGTTCTTTATGTTCAAAGTCACCCCTTCAATGGAATG
GGAAGTCAATCTCCTTTCAAACAAATCTCATGTGGTCAAGGACTTCTTGT
TTCCGTTTCCCCCGCCCATGACGCCAAGCGAGCACCAATACTACAGCCAA
GCAGGAGCGTTCTATGTTGCAGCCAGCGTGTTTTTGATATGCTTCGATCT
CCGGCGAGCTGATTTCGCGGAGTTATGTCTGCACCACTTCGTAACGCTTG
GAATGGTGGTTATGAGCTATTTGTACAGCTATGTACGCGTTGGTATTGTG
ATTCTTGCTTTGCATGATGTGGGTGACATTTTTCTTTACTCGGCAAAGTT
CTTGCACTATTTGGGACTGGAGGGCTTGGACACCGCTGTGTTTTCGATTT
TTGCGGTTACGTTCTATGTGACGAGGCTTCTAATGTTCCCCAGACTTGTA
CATTTGATCTGCGTCGAGACTTTGCAAACCGTCGTGGCCGACGCTTCTTT
TAATAAGTGGGCAATGTACTATGATACGTACATTTTGCACTACGTATTCT
TTGTAGCGTTTGCTGGTATCTTGCTGGTGTTGCATTGTTTCTGGTTTACG
TTGATTTTGAAAATGATTTATCGAGAACTGTTCGAGGGTAAGAAGATTTC
TGAACATGGTGATATTCGAAGTGATGGAGAAGATAATGAAGAGATGACAG
AATTTGAAAAGGACGATGGTAACTAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:551536..552561-

>Ggra4456.t1 ID=Ggra4456.t1|Name=Ggra4456.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000898_pilon:551536..552561- (Gracilaria gracilis GNS1m male)
ATGAGCTTCTTCCCACAAGAACAATGCTGTCGAACCGGCGGTTTAATGCG
TCTACCCTTGTTTCTGAAGGATTTTGTGGACGCTATCAAGCACCAACAAC
AGTTTCGCACGCCTGAAAACCCCTCTCTTTTGAATCCGAATCGCTCACTT
GAAGATCTGTATACAGTCATTATCCTCAGCATTGTGTTTCTGACGCTTCG
GTTGGCGCTTGATAAGTTTTTGTTTGCCATCATTTTTCGTTCTTATTCCC
CGAAGCTGCAACGAAAACTGTCAGAGAACCTGTTCTACTCTGTATATTAC
ATCGCAGCATTTTCGTTCTTTATGTTCAAAGTCACCCCTTCAATGGAATG
GGAAGTCAATCTCCTTTCAAACAAATCTCATGTGGTCAAGGACTTCTTGT
TTCCGTTTCCCCCGCCCATGACGCCAAGCGAGCACCAATACTACAGCCAA
GCAGGAGCGTTCTATGTTGCAGCCAGCGTGTTTTTGATATGCTTCGATCT
CCGGCGAGCTGATTTCGCGGAGTTATGTCTGCACCACTTCGTAACGCTTG
GAATGGTGGTTATGAGCTATTTGTACAGCTATGTACGCGTTGGTATTGTG
ATTCTTGCTTTGCATGATGTGGGTGACATTTTTCTTTACTCGGCAAAGTT
CTTGCACTATTTGGGACTGGAGGGCTTGGACACCGCTGTGTTTTCGATTT
TTGCGGTTACGTTCTATGTGACGAGGCTTCTAATGTTCCCCAGACTTGTA
CATTTGATCTGCGTCGAGACTTTGCAAACCGTCGTGGCCGACGCTTCTTT
TAATAAGTGGGCAATGTACTATGATACGTACATTTTGCACTACGTATTCT
TTGTAGCGTTTGCTGGTATCTTGCTGGTGTTGCATTGTTTCTGGTTTACG
TTGATTTTGAAAATGATTTATCGAGAACTGTTCGAGGGTAAGAAGATTTC
TGAACATGGTGATATTCGAAGTGATGGAGAAGATAATGAAGAGATGACAG
AATTTGAAAAGGACGATGGTAACTAG
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