Ggra4454.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4454.t1
Unique NameGgra4454.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length548
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:546122..547932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704063.1
PFAMsPDZ_2,Trypsin_2
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009507,GO:0009526,GO:0009532,GO:0009533,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009765,GO:0009941,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0019684,GO:0030091,GO:0030163,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue5.57e-145
EggNOG OGsCOG0265@1|root,KOG1320@2759|Eukaryota
Descriptionserine-type endopeptidase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4454Ggra4454Gracilaria gracilis GNS1m malegenetig00000898_pilon 546122..547932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4454.t1Ggra4454.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 546122..547932 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4454.t1.start1Ggra4454.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 546122..546124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4454.t1.CDS1Ggra4454.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 546122..546784 +
Ggra4454.t1.CDS2Ggra4454.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 546868..546922 +
Ggra4454.t1.CDS3Ggra4454.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 547007..547932 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4454.t1.exon1Ggra4454.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 546122..546784 +
Ggra4454.t1.exon2Ggra4454.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 546868..546922 +
Ggra4454.t1.exon3Ggra4454.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 547007..547932 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4454.t1.intron1Ggra4454.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 546785..546867 +
Ggra4454.t1.intron2Ggra4454.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 546923..547006 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4454.t1.stop1Ggra4454.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 547930..547932 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4454.t1 ID=Ggra4454.t1|Name=Ggra4454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=548bp
MAPAFLNFSRPSFLSRPRIRQETQQRRPPSSPTKTKAPRQTLQSPVPQTQ
VPVTPQANKKLSIDFVLDSVLKVYCTHCEPNYELPWAMTAQRHSTASAFI
ISGRRILTNAHAVEHHTSVRLKKRYSDVRYHAKVVAIGNECDIALLQVDD
KEFWEEFEECHDSSTLLHPGPLPELQDAVRVIGFPSPGNQISVTAGVCSR
VEMQHYVHGQDELLAVQIDAAINPGNSGGPVIDEQLQVIGIAFQSVDPSH
ADSVGYFIPFSVVNHFLDDIARHKRYTGFPFCGFHWQKMENPYLRRAYGM
KSDTSGILVKWVAETVDAARVLQKGDVVTHMDGISISNAGTIPFRHGERI
DLDYMVTSKFSNDPVTVTFERDGKQHEESYKLSRMQDHCLVPIHDARHNE
RRQPEYVVCGGLVFQSLSEPFLRAVYGQNWLFDAPVALVELYYNGTKTNA
GRVEVVLLTQILSASCTTGYETDSEPDIRVVRKLNSKPVNSLKHLAGLLD
ACPRDVRDLHFEVDKNDIIIIDKRAASEEERAILATYCIPAARSLGS*
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spliced messenger RNA

>Ggra4454.t1 ID=Ggra4454.t1|Name=Ggra4454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000898_pilon:546122..547932+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCAGCTTTCTTGAACTTTTCGCGCCCATCTTTCCTCTCCCGACC
TCGTATTCGACAAGAGACGCAGCAACGGCGACCACCTTCTTCCCCGACGA
AAACAAAGGCGCCACGGCAAACGCTGCAATCACCCGTGCCTCAAACACAA
GTTCCGGTCACGCCACAGGCGAATAAGAAGCTCTCTATCGACTTCGTGCT
GGATTCTGTGCTCAAGGTCTATTGCACACATTGTGAACCTAACTATGAAT
TGCCCTGGGCAATGACTGCTCAGCGTCATTCCACAGCTTCCGCGTTTATC
ATATCGGGGCGTCGTATTCTGACGAATGCGCATGCTGTTGAACATCATAC
ATCAGTGCGTTTGAAGAAGAGGTACTCAGATGTCAGATATCATGCAAAAG
TGGTCGCGATTGGTAACGAATGCGATATAGCTTTGCTACAGGTTGATGAC
AAAGAGTTTTGGGAGGAGTTCGAAGAATGTCACGATTCAAGCACTCTCCT
ACACCCCGGGCCTTTACCCGAGCTCCAGGACGCTGTTCGTGTTATTGGTT
TCCCCTCTCCTGGGAACCAAATAAGCGTTACGGCTGGCGTGTGCAGCAGA
GTAGAAATGCAGCACTATGTTCATGGCCAGGACGAGTTGTTAGCTGTTCA
GATTGATGCAGCGATCAACCCAGGTAATAGTGGAGGTCCAGTGATTGATG
AACAACTGCAAGTAATCGGGATTGCATTCCAATCAGTTGATCCGTCTCAT
GCAGATTCCGTTGGGTATTTCATTCCTTTTTCTGTTGTTAACCATTTCCT
AGATGACATTGCCAGACACAAGAGATACACGGGCTTCCCATTTTGCGGGT
TTCATTGGCAAAAGATGGAAAATCCTTATCTGCGTCGTGCATATGGAATG
AAGTCTGATACGTCTGGAATCCTCGTGAAGTGGGTTGCAGAAACAGTCGA
TGCTGCACGAGTCCTTCAGAAGGGCGATGTGGTCACACATATGGATGGGA
TAAGCATATCAAACGCTGGTACCATACCTTTTCGACACGGGGAAAGAATC
GATCTAGATTACATGGTGACAAGCAAGTTTTCCAATGATCCCGTTACCGT
GACGTTCGAGAGGGATGGGAAGCAACATGAAGAATCATACAAGCTGTCAA
GAATGCAGGACCACTGCCTCGTTCCGATTCATGACGCTCGTCACAACGAA
AGACGGCAACCTGAATATGTGGTTTGCGGAGGGCTCGTGTTCCAATCTCT
CAGTGAACCATTTTTGCGAGCTGTCTATGGACAGAATTGGTTATTCGATG
CTCCAGTAGCCTTGGTGGAGCTATACTACAATGGAACAAAAACGAACGCG
GGCCGTGTGGAAGTGGTGCTCCTTACTCAGATTTTGTCCGCAAGCTGTAC
GACCGGATATGAGACCGACAGTGAGCCTGACATTAGGGTGGTGCGAAAAC
TCAACTCCAAACCTGTTAACAGTTTAAAGCACCTTGCGGGCTTGTTGGAT
GCATGTCCTCGTGACGTCAGGGATCTTCACTTCGAAGTTGACAAAAATGA
CATTATCATAATTGATAAGCGTGCTGCAAGTGAAGAAGAACGCGCAATAT
TGGCGACATATTGCATACCGGCCGCACGCTCTTTAGGATCCTAG
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protein sequence of Ggra4454.t1

>Ggra4454.t1 ID=Ggra4454.t1|Name=Ggra4454.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=548bp
MAPAFLNFSRPSFLSRPRIRQETQQRRPPSSPTKTKAPRQTLQSPVPQTQ
VPVTPQANKKLSIDFVLDSVLKVYCTHCEPNYELPWAMTAQRHSTASAFI
ISGRRILTNAHAVEHHTSVRLKKRYSDVRYHAKVVAIGNECDIALLQVDD
KEFWEEFEECHDSSTLLHPGPLPELQDAVRVIGFPSPGNQISVTAGVCSR
VEMQHYVHGQDELLAVQIDAAINPGNSGGPVIDEQLQVIGIAFQSVDPSH
ADSVGYFIPFSVVNHFLDDIARHKRYTGFPFCGFHWQKMENPYLRRAYGM
KSDTSGILVKWVAETVDAARVLQKGDVVTHMDGISISNAGTIPFRHGERI
DLDYMVTSKFSNDPVTVTFERDGKQHEESYKLSRMQDHCLVPIHDARHNE
RRQPEYVVCGGLVFQSLSEPFLRAVYGQNWLFDAPVALVELYYNGTKTNA
GRVEVVLLTQILSASCTTGYETDSEPDIRVVRKLNSKPVNSLKHLAGLLD
ACPRDVRDLHFEVDKNDIIIIDKRAASEEERAILATYCIPAARSLGS*
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mRNA from alignment at tig00000898_pilon:546122..547932+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4454.t1 ID=Ggra4454.t1|Name=Ggra4454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1811bp|location=Sequence derived from alignment at tig00000898_pilon:546122..547932+ (Gracilaria gracilis GNS1m male)
ATGGCACCAGCTTTCTTGAACTTTTCGCGCCCATCTTTCCTCTCCCGACC
TCGTATTCGACAAGAGACGCAGCAACGGCGACCACCTTCTTCCCCGACGA
AAACAAAGGCGCCACGGCAAACGCTGCAATCACCCGTGCCTCAAACACAA
GTTCCGGTCACGCCACAGGCGAATAAGAAGCTCTCTATCGACTTCGTGCT
GGATTCTGTGCTCAAGGTCTATTGCACACATTGTGAACCTAACTATGAAT
TGCCCTGGGCAATGACTGCTCAGCGTCATTCCACAGCTTCCGCGTTTATC
ATATCGGGGCGTCGTATTCTGACGAATGCGCATGCTGTTGAACATCATAC
ATCAGTGCGTTTGAAGAAGAGGTACTCAGATGTCAGATATCATGCAAAAG
TGGTCGCGATTGGTAACGAATGCGATATAGCTTTGCTACAGGTTGATGAC
AAAGAGTTTTGGGAGGAGTTCGAAGAATGTCACGATTCAAGCACTCTCCT
ACACCCCGGGCCTTTACCCGAGCTCCAGGACGCTGTTCGTGTTATTGGTT
TCCCCTCTCCTGGGAACCAAATAAGCGTTACGGCTGGCGTGTGCAGCAGA
GTAGAAATGCAGCACTATGTTCATGGCCAGGACGAGTTGTTAGCTGTTCA
GATTGATGCAGCGGTAAGTTTTCACGTCCCTTGATGCGATCTTGAAGTGT
TCATAATACTAACGTTACACAACATCTGGGACTTAAAACAACAAAGATCA
ACCCAGGTAATAGTGGAGGTCCAGTGATTGATGAACAACTGCAAGTAATC
GGTAAGATAGGACGTCTCCAACGCAAAAAGAAGGTGTGAACAACTTTCTA
CACAGGCTGCTAACCTACATATCGTATTTACACAGGGATTGCATTCCAAT
CAGTTGATCCGTCTCATGCAGATTCCGTTGGGTATTTCATTCCTTTTTCT
GTTGTTAACCATTTCCTAGATGACATTGCCAGACACAAGAGATACACGGG
CTTCCCATTTTGCGGGTTTCATTGGCAAAAGATGGAAAATCCTTATCTGC
GTCGTGCATATGGAATGAAGTCTGATACGTCTGGAATCCTCGTGAAGTGG
GTTGCAGAAACAGTCGATGCTGCACGAGTCCTTCAGAAGGGCGATGTGGT
CACACATATGGATGGGATAAGCATATCAAACGCTGGTACCATACCTTTTC
GACACGGGGAAAGAATCGATCTAGATTACATGGTGACAAGCAAGTTTTCC
AATGATCCCGTTACCGTGACGTTCGAGAGGGATGGGAAGCAACATGAAGA
ATCATACAAGCTGTCAAGAATGCAGGACCACTGCCTCGTTCCGATTCATG
ACGCTCGTCACAACGAAAGACGGCAACCTGAATATGTGGTTTGCGGAGGG
CTCGTGTTCCAATCTCTCAGTGAACCATTTTTGCGAGCTGTCTATGGACA
GAATTGGTTATTCGATGCTCCAGTAGCCTTGGTGGAGCTATACTACAATG
GAACAAAAACGAACGCGGGCCGTGTGGAAGTGGTGCTCCTTACTCAGATT
TTGTCCGCAAGCTGTACGACCGGATATGAGACCGACAGTGAGCCTGACAT
TAGGGTGGTGCGAAAACTCAACTCCAAACCTGTTAACAGTTTAAAGCACC
TTGCGGGCTTGTTGGATGCATGTCCTCGTGACGTCAGGGATCTTCACTTC
GAAGTTGACAAAAATGACATTATCATAATTGATAAGCGTGCTGCAAGTGA
AGAAGAACGCGCAATATTGGCGACATATTGCATACCGGCCGCACGCTCTT
TAGGATCCTAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:546122..547932+

>Ggra4454.t1 ID=Ggra4454.t1|Name=Ggra4454.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1644bp|location=Sequence derived from alignment at tig00000898_pilon:546122..547932+ (Gracilaria gracilis GNS1m male)
ATGGCACCAGCTTTCTTGAACTTTTCGCGCCCATCTTTCCTCTCCCGACC
TCGTATTCGACAAGAGACGCAGCAACGGCGACCACCTTCTTCCCCGACGA
AAACAAAGGCGCCACGGCAAACGCTGCAATCACCCGTGCCTCAAACACAA
GTTCCGGTCACGCCACAGGCGAATAAGAAGCTCTCTATCGACTTCGTGCT
GGATTCTGTGCTCAAGGTCTATTGCACACATTGTGAACCTAACTATGAAT
TGCCCTGGGCAATGACTGCTCAGCGTCATTCCACAGCTTCCGCGTTTATC
ATATCGGGGCGTCGTATTCTGACGAATGCGCATGCTGTTGAACATCATAC
ATCAGTGCGTTTGAAGAAGAGGTACTCAGATGTCAGATATCATGCAAAAG
TGGTCGCGATTGGTAACGAATGCGATATAGCTTTGCTACAGGTTGATGAC
AAAGAGTTTTGGGAGGAGTTCGAAGAATGTCACGATTCAAGCACTCTCCT
ACACCCCGGGCCTTTACCCGAGCTCCAGGACGCTGTTCGTGTTATTGGTT
TCCCCTCTCCTGGGAACCAAATAAGCGTTACGGCTGGCGTGTGCAGCAGA
GTAGAAATGCAGCACTATGTTCATGGCCAGGACGAGTTGTTAGCTGTTCA
GATTGATGCAGCGATCAACCCAGGTAATAGTGGAGGTCCAGTGATTGATG
AACAACTGCAAGTAATCGGGATTGCATTCCAATCAGTTGATCCGTCTCAT
GCAGATTCCGTTGGGTATTTCATTCCTTTTTCTGTTGTTAACCATTTCCT
AGATGACATTGCCAGACACAAGAGATACACGGGCTTCCCATTTTGCGGGT
TTCATTGGCAAAAGATGGAAAATCCTTATCTGCGTCGTGCATATGGAATG
AAGTCTGATACGTCTGGAATCCTCGTGAAGTGGGTTGCAGAAACAGTCGA
TGCTGCACGAGTCCTTCAGAAGGGCGATGTGGTCACACATATGGATGGGA
TAAGCATATCAAACGCTGGTACCATACCTTTTCGACACGGGGAAAGAATC
GATCTAGATTACATGGTGACAAGCAAGTTTTCCAATGATCCCGTTACCGT
GACGTTCGAGAGGGATGGGAAGCAACATGAAGAATCATACAAGCTGTCAA
GAATGCAGGACCACTGCCTCGTTCCGATTCATGACGCTCGTCACAACGAA
AGACGGCAACCTGAATATGTGGTTTGCGGAGGGCTCGTGTTCCAATCTCT
CAGTGAACCATTTTTGCGAGCTGTCTATGGACAGAATTGGTTATTCGATG
CTCCAGTAGCCTTGGTGGAGCTATACTACAATGGAACAAAAACGAACGCG
GGCCGTGTGGAAGTGGTGCTCCTTACTCAGATTTTGTCCGCAAGCTGTAC
GACCGGATATGAGACCGACAGTGAGCCTGACATTAGGGTGGTGCGAAAAC
TCAACTCCAAACCTGTTAACAGTTTAAAGCACCTTGCGGGCTTGTTGGAT
GCATGTCCTCGTGACGTCAGGGATCTTCACTTCGAAGTTGACAAAAATGA
CATTATCATAATTGATAAGCGTGCTGCAAGTGAAGAAGAACGCGCAATAT
TGGCGACATATTGCATACCGGCCGCACGCTCTTTAGGATCCTAG
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