Ggra4450.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4450.t1
Unique NameGgra4450.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:532602..533660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1191523.MROS_1906
Preferred namecho
PFAMsGIY-YIG,RNase_T
Max annot lvl2|Bacteria
KEGG rclassRC02795
KEGG koko:K02342,ko:K03703,ko:K03763,ko:K05984
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03420,ko03430,ko03440,map00230,map00240,map01100,map03030,map03420,map03430,map03440
KEGG ModuleM00260
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009380,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016787,GO:0016788,GO:0030312,GO:0031668,GO:0032991,GO:0033554,GO:0033683,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1902494,GO:1905347,GO:1905348,GO:1990391
Evalue1.01e-18
EggNOG OGsCOG0322@1|root,COG0847@1|root,COG0322@2|Bacteria,COG0847@2|Bacteria
EC2.7.7.7
DescriptionDNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4450Ggra4450Gracilaria gracilis GNS1m malegenetig00000898_pilon 532602..533660 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4450.t1.stop1Ggra4450.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 532602..532604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4450.t1.CDS1Ggra4450.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 532602..533660 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4450.t1.exon1Ggra4450.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 532602..533660 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4450.t1.start1Ggra4450.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 533658..533660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4450.t1Ggra4450.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 532602..533660 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4450.t1 ID=Ggra4450.t1|Name=Ggra4450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp
MSRTNNFQRQKTSRPIIIWDTETTGLSPTRNHIVEIAMMELECTSPLSTP
LSFSSLVHPPGKDAPRAVSRVHGITNQMIQDAPSFEKVWEGVLEYVQHVC
AQRGNPIFVAHNLSFDHRFLRQELARIGEPMPGWDFACSLRDVARIIWPG
HSASLASLGKLLRIHNEEAHRALSDVETTSKILAKADEHLRNLSVRMGNG
EAIAGSQIRHMIENAAMNRRESLMPEKEKSDRTVSDDESKIKLAQNGIML
TRSRAAKMQESSSREDQRDLEAQTLSNQFSSGVSVAERNGGGEREGAQMK
YVTRMGHLWHSSRNCACLDLAVSIRRVTAVPPRFRPCVLCVSGVRERHLS
QQ*
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spliced messenger RNA

>Ggra4450.t1 ID=Ggra4450.t1|Name=Ggra4450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000898_pilon:532602..533660- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGAACAAATAACTTTCAACGCCAGAAAACTTCGCGACCTATAAT
CATTTGGGATACTGAAACCACTGGTTTGAGTCCAACGAGGAACCACATTG
TCGAAATCGCTATGATGGAACTCGAATGTACTTCGCCTTTATCCACACCA
CTTTCGTTTTCTAGTCTTGTGCATCCTCCTGGAAAAGACGCCCCACGCGC
TGTAAGTCGCGTACACGGCATAACAAACCAAATGATACAAGATGCGCCAT
CGTTTGAAAAAGTGTGGGAAGGTGTTCTTGAATACGTGCAACATGTATGT
GCTCAACGAGGAAACCCAATTTTTGTCGCACACAATCTTTCCTTCGATCA
TAGATTTCTGAGACAAGAGCTCGCTCGTATTGGGGAGCCAATGCCAGGCT
GGGATTTTGCATGTTCTTTGAGAGATGTGGCCAGGATTATCTGGCCGGGT
CACTCGGCTAGTCTGGCATCACTTGGTAAATTGCTTCGGATTCACAATGA
AGAGGCTCATCGGGCGTTAAGCGATGTCGAAACTACGTCAAAGATTCTGG
CAAAGGCAGATGAACATCTACGAAACCTTAGCGTACGTATGGGCAACGGA
GAAGCGATAGCAGGTTCGCAAATTCGTCATATGATCGAAAACGCAGCCAT
GAATCGACGGGAATCTCTGATGCCGGAGAAAGAAAAATCGGATCGAACAG
TGTCCGACGACGAATCTAAGATAAAGCTGGCGCAAAATGGAATAATGTTG
ACTCGATCCAGGGCGGCAAAAATGCAGGAAAGTTCTTCTCGTGAGGATCA
GAGAGATTTGGAAGCACAGACATTGTCCAATCAGTTTTCGTCGGGAGTTA
GCGTTGCAGAGCGAAACGGCGGTGGGGAAAGAGAGGGCGCACAAATGAAG
TATGTCACAAGAATGGGGCACCTTTGGCATTCATCAAGAAACTGTGCATG
TCTTGATCTGGCGGTTAGCATTAGGAGAGTGACTGCCGTTCCTCCCAGAT
TTAGGCCATGCGTACTATGCGTTTCTGGAGTTCGAGAGAGACATCTTTCT
CAGCAATGA
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protein sequence of Ggra4450.t1

>Ggra4450.t1 ID=Ggra4450.t1|Name=Ggra4450.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MSRTNNFQRQKTSRPIIIWDTETTGLSPTRNHIVEIAMMELECTSPLSTP
LSFSSLVHPPGKDAPRAVSRVHGITNQMIQDAPSFEKVWEGVLEYVQHVC
AQRGNPIFVAHNLSFDHRFLRQELARIGEPMPGWDFACSLRDVARIIWPG
HSASLASLGKLLRIHNEEAHRALSDVETTSKILAKADEHLRNLSVRMGNG
EAIAGSQIRHMIENAAMNRRESLMPEKEKSDRTVSDDESKIKLAQNGIML
TRSRAAKMQESSSREDQRDLEAQTLSNQFSSGVSVAERNGGGEREGAQMK
YVTRMGHLWHSSRNCACLDLAVSIRRVTAVPPRFRPCVLCVSGVRERHLS
QQ*
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mRNA from alignment at tig00000898_pilon:532602..533660-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4450.t1 ID=Ggra4450.t1|Name=Ggra4450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000898_pilon:532602..533660- (Gracilaria gracilis GNS1m male)
ATGAGTCGAACAAATAACTTTCAACGCCAGAAAACTTCGCGACCTATAAT
CATTTGGGATACTGAAACCACTGGTTTGAGTCCAACGAGGAACCACATTG
TCGAAATCGCTATGATGGAACTCGAATGTACTTCGCCTTTATCCACACCA
CTTTCGTTTTCTAGTCTTGTGCATCCTCCTGGAAAAGACGCCCCACGCGC
TGTAAGTCGCGTACACGGCATAACAAACCAAATGATACAAGATGCGCCAT
CGTTTGAAAAAGTGTGGGAAGGTGTTCTTGAATACGTGCAACATGTATGT
GCTCAACGAGGAAACCCAATTTTTGTCGCACACAATCTTTCCTTCGATCA
TAGATTTCTGAGACAAGAGCTCGCTCGTATTGGGGAGCCAATGCCAGGCT
GGGATTTTGCATGTTCTTTGAGAGATGTGGCCAGGATTATCTGGCCGGGT
CACTCGGCTAGTCTGGCATCACTTGGTAAATTGCTTCGGATTCACAATGA
AGAGGCTCATCGGGCGTTAAGCGATGTCGAAACTACGTCAAAGATTCTGG
CAAAGGCAGATGAACATCTACGAAACCTTAGCGTACGTATGGGCAACGGA
GAAGCGATAGCAGGTTCGCAAATTCGTCATATGATCGAAAACGCAGCCAT
GAATCGACGGGAATCTCTGATGCCGGAGAAAGAAAAATCGGATCGAACAG
TGTCCGACGACGAATCTAAGATAAAGCTGGCGCAAAATGGAATAATGTTG
ACTCGATCCAGGGCGGCAAAAATGCAGGAAAGTTCTTCTCGTGAGGATCA
GAGAGATTTGGAAGCACAGACATTGTCCAATCAGTTTTCGTCGGGAGTTA
GCGTTGCAGAGCGAAACGGCGGTGGGGAAAGAGAGGGCGCACAAATGAAG
TATGTCACAAGAATGGGGCACCTTTGGCATTCATCAAGAAACTGTGCATG
TCTTGATCTGGCGGTTAGCATTAGGAGAGTGACTGCCGTTCCTCCCAGAT
TTAGGCCATGCGTACTATGCGTTTCTGGAGTTCGAGAGAGACATCTTTCT
CAGCAATGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:532602..533660-

>Ggra4450.t1 ID=Ggra4450.t1|Name=Ggra4450.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000898_pilon:532602..533660- (Gracilaria gracilis GNS1m male)
ATGAGTCGAACAAATAACTTTCAACGCCAGAAAACTTCGCGACCTATAAT
CATTTGGGATACTGAAACCACTGGTTTGAGTCCAACGAGGAACCACATTG
TCGAAATCGCTATGATGGAACTCGAATGTACTTCGCCTTTATCCACACCA
CTTTCGTTTTCTAGTCTTGTGCATCCTCCTGGAAAAGACGCCCCACGCGC
TGTAAGTCGCGTACACGGCATAACAAACCAAATGATACAAGATGCGCCAT
CGTTTGAAAAAGTGTGGGAAGGTGTTCTTGAATACGTGCAACATGTATGT
GCTCAACGAGGAAACCCAATTTTTGTCGCACACAATCTTTCCTTCGATCA
TAGATTTCTGAGACAAGAGCTCGCTCGTATTGGGGAGCCAATGCCAGGCT
GGGATTTTGCATGTTCTTTGAGAGATGTGGCCAGGATTATCTGGCCGGGT
CACTCGGCTAGTCTGGCATCACTTGGTAAATTGCTTCGGATTCACAATGA
AGAGGCTCATCGGGCGTTAAGCGATGTCGAAACTACGTCAAAGATTCTGG
CAAAGGCAGATGAACATCTACGAAACCTTAGCGTACGTATGGGCAACGGA
GAAGCGATAGCAGGTTCGCAAATTCGTCATATGATCGAAAACGCAGCCAT
GAATCGACGGGAATCTCTGATGCCGGAGAAAGAAAAATCGGATCGAACAG
TGTCCGACGACGAATCTAAGATAAAGCTGGCGCAAAATGGAATAATGTTG
ACTCGATCCAGGGCGGCAAAAATGCAGGAAAGTTCTTCTCGTGAGGATCA
GAGAGATTTGGAAGCACAGACATTGTCCAATCAGTTTTCGTCGGGAGTTA
GCGTTGCAGAGCGAAACGGCGGTGGGGAAAGAGAGGGCGCACAAATGAAG
TATGTCACAAGAATGGGGCACCTTTGGCATTCATCAAGAAACTGTGCATG
TCTTGATCTGGCGGTTAGCATTAGGAGAGTGACTGCCGTTCCTCCCAGAT
TTAGGCCATGCGTACTATGCGTTTCTGGAGTTCGAGAGAGACATCTTTCT
CAGCAATGA
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