Ggra4449.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4449.t1
Unique NameGgra4449.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:529843..531831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709111.1
Preferred namePMPCA
PFAMsPeptidase_M16,Peptidase_M16_C
Max annot lvl2759|Eukaryota
KEGG koko:K01412
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006508,GO:0006605,GO:0006626,GO:0006627,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006839,GO:0006851,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0017087,GO:0019538,GO:0019866,GO:0030001,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034220,GO:0034613,GO:0034982,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055085,GO:0070011,GO:0070013,GO:0070585,GO:0070588,GO:0070727,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072511,GO:0072594,GO:0072655,GO:0098655,GO:0098660,GO:0098662,GO:0098798,GO:0140096,GO:1901564
Evalue2.17e-129
EggNOG OGsCOG0612@1|root,KOG2067@2759|Eukaryota
EC3.4.24.64
Descriptionprotein processing involved in protein targeting to mitochondrion
COG categoryG
BRITEko00000,ko01000,ko01002,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4449Ggra4449Gracilaria gracilis GNS1m malegenetig00000898_pilon 529843..531831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4449.t1Ggra4449.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 529843..531831 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4449.t1.stop1Ggra4449.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 529843..529845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4449.t1.CDS1Ggra4449.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 529843..530681 -
Ggra4449.t1.CDS2Ggra4449.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 531054..531687 -
Ggra4449.t1.CDS3Ggra4449.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 531790..531831 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4449.t1.exon1Ggra4449.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 529843..530681 -
Ggra4449.t1.exon2Ggra4449.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 531054..531687 -
Ggra4449.t1.exon3Ggra4449.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 531790..531831 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4449.t1.intron1Ggra4449.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 530682..531053 -
Ggra4449.t1.intron2Ggra4449.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 531688..531789 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4449.t1.start1Ggra4449.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 531829..531831 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4449.t1 ID=Ggra4449.t1|Name=Ggra4449.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=505bp
MISNMRTIPRLARAHQYRTFATGAETPLMWKLTHGMFDPETSMTEKFPNI
PDPVDIEPPSPGAVEISTLSNGVRVASQDMGSPVAAIGFFVGAGSRNENP
YSSGVSHLIERLAFKGSSMRSKYRMTRDMERTGALFAASAARETISFSAE
GMRDKLPEMLSIVTETAVAPITTGCADGSPEWDIAMEEITTQTTVMKDEL
KSFASEPNGQVTEAIHAAAFHGNTLGLPLVAEERKLALMSPTTVNDFVSD
NFTPDKMVVSAANVNHTALLELSESLLGGISGESVPDVCRYTGGSVRISS
DGPGQVAIGFKGVSWQDDDLVPVCVLHTLLGGGGSFSSGGPGKGMYTRLY
SEILNKHGWVTAASAFNHCYSDGGLFGIHGVCEDSAHLNNLIEVVGLQVG
KLAGPLGTGELERAKMMTKSSLIMNLESRAVVCEDLGRQILCSGKYAGPE
KLIKMIDGVTEDDIRRVASKMIQSQPAVVTYGEEYATYEYSAIESSLKRQ
TQLA*
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spliced messenger RNA

>Ggra4449.t1 ID=Ggra4449.t1|Name=Ggra4449.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000898_pilon:529843..531831- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTCCAACATGCGCACCATTCCGCGCCTGGCTCGTGCACACCAGTA
TCGCACTTTCGCGACTGGTGCAGAGACCCCATTAATGTGGAAGCTTACGC
ACGGAATGTTCGACCCTGAAACTTCGATGACGGAGAAGTTCCCTAACATT
CCCGATCCCGTTGATATTGAACCTCCCAGTCCCGGCGCCGTGGAAATCTC
CACTCTCTCCAACGGCGTGCGAGTAGCCTCACAAGACATGGGATCCCCGG
TCGCGGCGATCGGGTTTTTCGTTGGAGCGGGTTCGCGAAATGAAAACCCT
TATTCATCAGGTGTCTCGCATTTAATCGAACGTCTTGCGTTTAAAGGTTC
TTCGATGAGAAGCAAGTATCGAATGACGAGAGATATGGAACGCACCGGGG
CTTTATTCGCTGCTTCTGCTGCAAGGGAAACCATTTCGTTTTCTGCGGAA
GGAATGAGGGACAAGTTGCCCGAGATGCTGAGCATTGTTACGGAGACCGC
GGTTGCGCCGATTACTACTGGGTGCGCTGACGGTTCGCCTGAATGGGACA
TAGCCATGGAAGAAATCACTACCCAAACCACCGTCATGAAAGACGAGTTG
AAGAGCTTTGCGTCCGAACCGAATGGCCAGGTCACTGAGGCCATCCATGC
TGCTGCATTCCACGGAAACACCCTAGGGCTTCCATTGGTTGCCGAAGAAC
GCAAGTTGGCCCTTATGAGTCCGACCACTGTGAACGATTTCGTTTCCGAT
AATTTCACCCCAGATAAGATGGTTGTGTCCGCTGCGAATGTGAATCATAC
TGCTCTCTTGGAATTATCTGAATCACTTTTGGGAGGAATTAGTGGAGAAA
GTGTCCCTGACGTATGCCGATACACCGGCGGCTCGGTTCGAATCTCTTCA
GATGGCCCTGGACAAGTAGCGATCGGATTCAAGGGCGTATCATGGCAAGA
TGATGATCTTGTGCCGGTTTGTGTGTTGCACACACTGCTTGGAGGTGGCG
GCTCATTCAGCTCAGGTGGACCAGGAAAGGGAATGTACACACGTCTGTAC
TCCGAAATTTTGAACAAACACGGCTGGGTGACAGCTGCATCAGCTTTTAA
CCATTGCTATTCAGATGGTGGCCTTTTTGGGATTCATGGTGTCTGCGAGG
ATTCAGCTCATCTAAACAACCTTATTGAGGTTGTGGGTCTTCAAGTCGGA
AAGCTAGCTGGTCCACTTGGGACTGGCGAACTTGAGCGTGCGAAAATGAT
GACAAAGAGCAGTTTGATTATGAACCTTGAAAGCCGTGCGGTCGTCTGCG
AAGATCTTGGACGGCAAATTCTTTGCTCTGGGAAGTATGCTGGACCGGAG
AAATTGATAAAAATGATTGATGGCGTGACTGAAGACGACATACGACGGGT
AGCATCAAAAATGATTCAGAGTCAGCCAGCTGTTGTGACTTACGGGGAAG
AGTACGCAACTTATGAGTATTCGGCTATTGAGTCATCTCTTAAGCGTCAG
ACACAACTGGCGTAA
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protein sequence of Ggra4449.t1

>Ggra4449.t1 ID=Ggra4449.t1|Name=Ggra4449.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=505bp
MISNMRTIPRLARAHQYRTFATGAETPLMWKLTHGMFDPETSMTEKFPNI
PDPVDIEPPSPGAVEISTLSNGVRVASQDMGSPVAAIGFFVGAGSRNENP
YSSGVSHLIERLAFKGSSMRSKYRMTRDMERTGALFAASAARETISFSAE
GMRDKLPEMLSIVTETAVAPITTGCADGSPEWDIAMEEITTQTTVMKDEL
KSFASEPNGQVTEAIHAAAFHGNTLGLPLVAEERKLALMSPTTVNDFVSD
NFTPDKMVVSAANVNHTALLELSESLLGGISGESVPDVCRYTGGSVRISS
DGPGQVAIGFKGVSWQDDDLVPVCVLHTLLGGGGSFSSGGPGKGMYTRLY
SEILNKHGWVTAASAFNHCYSDGGLFGIHGVCEDSAHLNNLIEVVGLQVG
KLAGPLGTGELERAKMMTKSSLIMNLESRAVVCEDLGRQILCSGKYAGPE
KLIKMIDGVTEDDIRRVASKMIQSQPAVVTYGEEYATYEYSAIESSLKRQ
TQLA*
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mRNA from alignment at tig00000898_pilon:529843..531831-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4449.t1 ID=Ggra4449.t1|Name=Ggra4449.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1989bp|location=Sequence derived from alignment at tig00000898_pilon:529843..531831- (Gracilaria gracilis GNS1m male)
ATGATCTCCAACATGCGCACCATTCCGCGCCTGGCTCGTGCAGTAAGTAT
TTCCGCTTTGTATAACTTCTTCACTACCTCCTCAGTGCCAAGTCGCAACT
AACCGACTCACGTCTTCATCTTACGTCCAATGATGACTCTGTAGCACCAG
TATCGCACTTTCGCGACTGGTGCAGAGACCCCATTAATGTGGAAGCTTAC
GCACGGAATGTTCGACCCTGAAACTTCGATGACGGAGAAGTTCCCTAACA
TTCCCGATCCCGTTGATATTGAACCTCCCAGTCCCGGCGCCGTGGAAATC
TCCACTCTCTCCAACGGCGTGCGAGTAGCCTCACAAGACATGGGATCCCC
GGTCGCGGCGATCGGGTTTTTCGTTGGAGCGGGTTCGCGAAATGAAAACC
CTTATTCATCAGGTGTCTCGCATTTAATCGAACGTCTTGCGTTTAAAGGT
TCTTCGATGAGAAGCAAGTATCGAATGACGAGAGATATGGAACGCACCGG
GGCTTTATTCGCTGCTTCTGCTGCAAGGGAAACCATTTCGTTTTCTGCGG
AAGGAATGAGGGACAAGTTGCCCGAGATGCTGAGCATTGTTACGGAGACC
GCGGTTGCGCCGATTACTACTGGGTGCGCTGACGGTTCGCCTGAATGGGA
CATAGCCATGGAAGAAATCACTACCCAAACCACCGTCATGAAAGACGAGT
TGAAGAGCTTTGCGTCCGAACCGAATGGCCAGGTCACTGAGGCCATCCAT
GCTGCTGCATTCCACGGAAACACCCTAGGTAAGTTGCGATAGATCAAAGC
GTGATCTCGATTTGAGCGATAATTGAGGTGTGAGAGTATTCAGCCATCGC
CCGTTTTTCCATCACGGAAATGTTACGCGTCGGCTGAGCTAGTATCACCT
CGTAGATTACAGTAACAGCGGTTTTCGGTTTTCGGAAACTGTCGTCATCG
GAAGTGCGCTACAACTATGCTCTAGTCTGCGCTTGTCCCTTAATGGGGTT
TAGTGCGCTGAGACTGCAAAGCAACCTTCTACATTTCTTCATTGTGGTGA
AAAGTTTCATTCTCATACGCTGCCGGCGAGGGTAGCAGATGTTGTCTAGA
TCAATACTGACTCCCTCAACCTTGTTTCCTTGGTTTCTTGAATACTACAG
GGCTTCCATTGGTTGCCGAAGAACGCAAGTTGGCCCTTATGAGTCCGACC
ACTGTGAACGATTTCGTTTCCGATAATTTCACCCCAGATAAGATGGTTGT
GTCCGCTGCGAATGTGAATCATACTGCTCTCTTGGAATTATCTGAATCAC
TTTTGGGAGGAATTAGTGGAGAAAGTGTCCCTGACGTATGCCGATACACC
GGCGGCTCGGTTCGAATCTCTTCAGATGGCCCTGGACAAGTAGCGATCGG
ATTCAAGGGCGTATCATGGCAAGATGATGATCTTGTGCCGGTTTGTGTGT
TGCACACACTGCTTGGAGGTGGCGGCTCATTCAGCTCAGGTGGACCAGGA
AAGGGAATGTACACACGTCTGTACTCCGAAATTTTGAACAAACACGGCTG
GGTGACAGCTGCATCAGCTTTTAACCATTGCTATTCAGATGGTGGCCTTT
TTGGGATTCATGGTGTCTGCGAGGATTCAGCTCATCTAAACAACCTTATT
GAGGTTGTGGGTCTTCAAGTCGGAAAGCTAGCTGGTCCACTTGGGACTGG
CGAACTTGAGCGTGCGAAAATGATGACAAAGAGCAGTTTGATTATGAACC
TTGAAAGCCGTGCGGTCGTCTGCGAAGATCTTGGACGGCAAATTCTTTGC
TCTGGGAAGTATGCTGGACCGGAGAAATTGATAAAAATGATTGATGGCGT
GACTGAAGACGACATACGACGGGTAGCATCAAAAATGATTCAGAGTCAGC
CAGCTGTTGTGACTTACGGGGAAGAGTACGCAACTTATGAGTATTCGGCT
ATTGAGTCATCTCTTAAGCGTCAGACACAACTGGCGTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:529843..531831-

>Ggra4449.t1 ID=Ggra4449.t1|Name=Ggra4449.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1515bp|location=Sequence derived from alignment at tig00000898_pilon:529843..531831- (Gracilaria gracilis GNS1m male)
ATGATCTCCAACATGCGCACCATTCCGCGCCTGGCTCGTGCACACCAGTA
TCGCACTTTCGCGACTGGTGCAGAGACCCCATTAATGTGGAAGCTTACGC
ACGGAATGTTCGACCCTGAAACTTCGATGACGGAGAAGTTCCCTAACATT
CCCGATCCCGTTGATATTGAACCTCCCAGTCCCGGCGCCGTGGAAATCTC
CACTCTCTCCAACGGCGTGCGAGTAGCCTCACAAGACATGGGATCCCCGG
TCGCGGCGATCGGGTTTTTCGTTGGAGCGGGTTCGCGAAATGAAAACCCT
TATTCATCAGGTGTCTCGCATTTAATCGAACGTCTTGCGTTTAAAGGTTC
TTCGATGAGAAGCAAGTATCGAATGACGAGAGATATGGAACGCACCGGGG
CTTTATTCGCTGCTTCTGCTGCAAGGGAAACCATTTCGTTTTCTGCGGAA
GGAATGAGGGACAAGTTGCCCGAGATGCTGAGCATTGTTACGGAGACCGC
GGTTGCGCCGATTACTACTGGGTGCGCTGACGGTTCGCCTGAATGGGACA
TAGCCATGGAAGAAATCACTACCCAAACCACCGTCATGAAAGACGAGTTG
AAGAGCTTTGCGTCCGAACCGAATGGCCAGGTCACTGAGGCCATCCATGC
TGCTGCATTCCACGGAAACACCCTAGGGCTTCCATTGGTTGCCGAAGAAC
GCAAGTTGGCCCTTATGAGTCCGACCACTGTGAACGATTTCGTTTCCGAT
AATTTCACCCCAGATAAGATGGTTGTGTCCGCTGCGAATGTGAATCATAC
TGCTCTCTTGGAATTATCTGAATCACTTTTGGGAGGAATTAGTGGAGAAA
GTGTCCCTGACGTATGCCGATACACCGGCGGCTCGGTTCGAATCTCTTCA
GATGGCCCTGGACAAGTAGCGATCGGATTCAAGGGCGTATCATGGCAAGA
TGATGATCTTGTGCCGGTTTGTGTGTTGCACACACTGCTTGGAGGTGGCG
GCTCATTCAGCTCAGGTGGACCAGGAAAGGGAATGTACACACGTCTGTAC
TCCGAAATTTTGAACAAACACGGCTGGGTGACAGCTGCATCAGCTTTTAA
CCATTGCTATTCAGATGGTGGCCTTTTTGGGATTCATGGTGTCTGCGAGG
ATTCAGCTCATCTAAACAACCTTATTGAGGTTGTGGGTCTTCAAGTCGGA
AAGCTAGCTGGTCCACTTGGGACTGGCGAACTTGAGCGTGCGAAAATGAT
GACAAAGAGCAGTTTGATTATGAACCTTGAAAGCCGTGCGGTCGTCTGCG
AAGATCTTGGACGGCAAATTCTTTGCTCTGGGAAGTATGCTGGACCGGAG
AAATTGATAAAAATGATTGATGGCGTGACTGAAGACGACATACGACGGGT
AGCATCAAAAATGATTCAGAGTCAGCCAGCTGTTGTGACTTACGGGGAAG
AGTACGCAACTTATGAGTATTCGGCTATTGAGTCATCTCTTAAGCGTCAG
ACACAACTGGCGTAA
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