Ggra4448.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4448.t1
Unique NameGgra4448.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length80
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:528822..529128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog244447.XP_008311631.1
Preferred nameABRACL
PFAMsCostars
Max annot lvl33208|Metazoa
Evalue1.84e-28
EggNOG OGsKOG3376@1|root,KOG3376@2759|Eukaryota,3A6NJ@33154|Opisthokonta,3BSNM@33208|Metazoa,3D97M@33213|Bilateria,48G0K@7711|Chordata,49CTJ@7742|Vertebrata,4A4G5@7898|Actinopterygii
DescriptionABRA C-terminal like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4448Ggra4448Gracilaria gracilis GNS1m malegenetig00000898_pilon 528822..529128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4448.t1Ggra4448.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 528822..529128 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4448.t1.start1Ggra4448.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 528822..528824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4448.t1.CDS1Ggra4448.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 528822..528901 +
Ggra4448.t1.CDS2Ggra4448.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 528969..529128 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4448.t1.exon1Ggra4448.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 528822..528901 +
Ggra4448.t1.exon2Ggra4448.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 528969..529128 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4448.t1.intron1Ggra4448.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 528902..528968 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4448.t1.stop1Ggra4448.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 529126..529128 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4448.t1 ID=Ggra4448.t1|Name=Ggra4448.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=80bp
MDVAGEVKQLVEEIRRLGDVGSDGKLSVKFVKLIDDERCGNIFEAIVGTL
KAARKAKVIDFEGEFLLKNVHDDVEIKVL*
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spliced messenger RNA

>Ggra4448.t1 ID=Ggra4448.t1|Name=Ggra4448.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp|location=Sequence derived from alignment at tig00000898_pilon:528822..529128+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTTGCAGGCGAAGTTAAGCAGCTGGTAGAGGAAATCAGGAGACT
CGGGGATGTTGGTTCCGATGGGAAGTTATCTGTGAAATTCGTCAAACTTA
TCGACGACGAAAGATGCGGGAACATCTTCGAGGCTATAGTTGGAACTCTC
AAGGCCGCTCGCAAGGCCAAAGTTATCGATTTTGAGGGTGAATTCCTACT
CAAGAACGTTCATGACGACGTAGAGATCAAGGTGCTTTGA
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protein sequence of Ggra4448.t1

>Ggra4448.t1 ID=Ggra4448.t1|Name=Ggra4448.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=80bp
MDVAGEVKQLVEEIRRLGDVGSDGKLSVKFVKLIDDERCGNIFEAIVGTL
KAARKAKVIDFEGEFLLKNVHDDVEIKVL*
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mRNA from alignment at tig00000898_pilon:528822..529128+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4448.t1 ID=Ggra4448.t1|Name=Ggra4448.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp|location=Sequence derived from alignment at tig00000898_pilon:528822..529128+ (Gracilaria gracilis GNS1m male)
ATGGATGTTGCAGGCGAAGTTAAGCAGCTGGTAGAGGAAATCAGGAGACT
CGGGGATGTTGGTTCCGATGGGAAGTTATCGTAAGTTAAGCTTTGATTTC
ACTTCCATCTCTCGAAGCCTTGTCTAACTGTTCAAAACCTTGTGCAGTGT
GAAATTCGTCAAACTTATCGACGACGAAAGATGCGGGAACATCTTCGAGG
CTATAGTTGGAACTCTCAAGGCCGCTCGCAAGGCCAAAGTTATCGATTTT
GAGGGTGAATTCCTACTCAAGAACGTTCATGACGACGTAGAGATCAAGGT
GCTTTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:528822..529128+

>Ggra4448.t1 ID=Ggra4448.t1|Name=Ggra4448.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=240bp|location=Sequence derived from alignment at tig00000898_pilon:528822..529128+ (Gracilaria gracilis GNS1m male)
ATGGATGTTGCAGGCGAAGTTAAGCAGCTGGTAGAGGAAATCAGGAGACT
CGGGGATGTTGGTTCCGATGGGAAGTTATCTGTGAAATTCGTCAAACTTA
TCGACGACGAAAGATGCGGGAACATCTTCGAGGCTATAGTTGGAACTCTC
AAGGCCGCTCGCAAGGCCAAAGTTATCGATTTTGAGGGTGAATTCCTACT
CAAGAACGTTCATGACGACGTAGAGATCAAGGTGCTTTGA
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