Ggra4442.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4442.t1
Unique NameGgra4442.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:454661..455461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4442Ggra4442Gracilaria gracilis GNS1m malegenetig00000898_pilon 454661..455461 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4442.t1.stop1Ggra4442.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 454661..454663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4442.t1.CDS1Ggra4442.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 454661..455461 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4442.t1.exon1Ggra4442.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 454661..455461 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4442.t1.start1Ggra4442.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 455459..455461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4442.t1Ggra4442.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 454661..455461 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4442.t1 ID=Ggra4442.t1|Name=Ggra4442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=267bp
MRRSLSTNAVEQPGFPKRSRPENHLTSSLQGTVSTESLYENSWEQDFRKE
YEGHGRNAVAQKESCVPRSSTPDISASGDVDDHQFSSIPVYASSKASPSH
LERNQSGHFSRCPVSYRYVGTSAACRARTNSFPDLNVNQTQSACDSNALN
DVLEDPSHIQSVELLDLRNLSSPLGAVLTHESKSDAQPQTDFHILMHPME
NPTQLEAINLHPVATNLPSRESNHSLSAIGTTDSLVSTQEHFVVHGFQGD
AKGERNTKTHRRIEHH*
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spliced messenger RNA

>Ggra4442.t1 ID=Ggra4442.t1|Name=Ggra4442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000898_pilon:454661..455461- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAGAAGCCTCAGTACAAATGCGGTGGAGCAACCAGGATTCCCAAA
AAGGAGTCGACCTGAAAACCACCTCACGTCTTCTTTACAGGGCACAGTAT
CTACAGAGTCACTTTACGAGAATTCATGGGAGCAGGACTTTAGGAAAGAG
TATGAAGGACATGGAAGAAACGCCGTAGCACAGAAAGAAAGCTGTGTTCC
TCGTTCGAGCACCCCTGATATCAGCGCTTCAGGCGATGTGGATGATCATC
AATTTTCCTCCATACCAGTATATGCTTCTTCGAAGGCCTCCCCTTCACAT
CTTGAGCGAAATCAATCTGGTCACTTCTCACGATGCCCAGTTTCTTATCG
ATATGTCGGAACCTCTGCTGCTTGTCGTGCTCGAACGAACAGTTTTCCAG
ATTTGAACGTCAATCAAACTCAAAGTGCATGTGATTCAAATGCATTGAAC
GATGTACTTGAAGATCCATCACATATTCAATCTGTGGAGCTACTAGACCT
ACGTAATCTATCATCTCCGTTAGGAGCTGTACTTACCCATGAAAGCAAGA
GTGATGCACAGCCTCAGACCGACTTTCATATTCTGATGCATCCTATGGAG
AACCCCACACAACTTGAGGCAATCAACCTACATCCGGTTGCCACGAACCT
ACCTTCGAGGGAAAGTAACCACTCTCTTTCTGCAATAGGAACGACTGACA
GTTTAGTCTCAACACAGGAGCACTTTGTTGTGCATGGCTTCCAAGGTGAT
GCAAAAGGAGAAAGAAATACGAAGACTCATAGACGTATTGAACATCATTG
A
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protein sequence of Ggra4442.t1

>Ggra4442.t1 ID=Ggra4442.t1|Name=Ggra4442.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MRRSLSTNAVEQPGFPKRSRPENHLTSSLQGTVSTESLYENSWEQDFRKE
YEGHGRNAVAQKESCVPRSSTPDISASGDVDDHQFSSIPVYASSKASPSH
LERNQSGHFSRCPVSYRYVGTSAACRARTNSFPDLNVNQTQSACDSNALN
DVLEDPSHIQSVELLDLRNLSSPLGAVLTHESKSDAQPQTDFHILMHPME
NPTQLEAINLHPVATNLPSRESNHSLSAIGTTDSLVSTQEHFVVHGFQGD
AKGERNTKTHRRIEHH*
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mRNA from alignment at tig00000898_pilon:454661..455461-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4442.t1 ID=Ggra4442.t1|Name=Ggra4442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000898_pilon:454661..455461- (Gracilaria gracilis GNS1m male)
ATGCGAAGAAGCCTCAGTACAAATGCGGTGGAGCAACCAGGATTCCCAAA
AAGGAGTCGACCTGAAAACCACCTCACGTCTTCTTTACAGGGCACAGTAT
CTACAGAGTCACTTTACGAGAATTCATGGGAGCAGGACTTTAGGAAAGAG
TATGAAGGACATGGAAGAAACGCCGTAGCACAGAAAGAAAGCTGTGTTCC
TCGTTCGAGCACCCCTGATATCAGCGCTTCAGGCGATGTGGATGATCATC
AATTTTCCTCCATACCAGTATATGCTTCTTCGAAGGCCTCCCCTTCACAT
CTTGAGCGAAATCAATCTGGTCACTTCTCACGATGCCCAGTTTCTTATCG
ATATGTCGGAACCTCTGCTGCTTGTCGTGCTCGAACGAACAGTTTTCCAG
ATTTGAACGTCAATCAAACTCAAAGTGCATGTGATTCAAATGCATTGAAC
GATGTACTTGAAGATCCATCACATATTCAATCTGTGGAGCTACTAGACCT
ACGTAATCTATCATCTCCGTTAGGAGCTGTACTTACCCATGAAAGCAAGA
GTGATGCACAGCCTCAGACCGACTTTCATATTCTGATGCATCCTATGGAG
AACCCCACACAACTTGAGGCAATCAACCTACATCCGGTTGCCACGAACCT
ACCTTCGAGGGAAAGTAACCACTCTCTTTCTGCAATAGGAACGACTGACA
GTTTAGTCTCAACACAGGAGCACTTTGTTGTGCATGGCTTCCAAGGTGAT
GCAAAAGGAGAAAGAAATACGAAGACTCATAGACGTATTGAACATCATTG
A
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Coding sequence (CDS) from alignment at tig00000898_pilon:454661..455461-

>Ggra4442.t1 ID=Ggra4442.t1|Name=Ggra4442.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00000898_pilon:454661..455461- (Gracilaria gracilis GNS1m male)
ATGCGAAGAAGCCTCAGTACAAATGCGGTGGAGCAACCAGGATTCCCAAA
AAGGAGTCGACCTGAAAACCACCTCACGTCTTCTTTACAGGGCACAGTAT
CTACAGAGTCACTTTACGAGAATTCATGGGAGCAGGACTTTAGGAAAGAG
TATGAAGGACATGGAAGAAACGCCGTAGCACAGAAAGAAAGCTGTGTTCC
TCGTTCGAGCACCCCTGATATCAGCGCTTCAGGCGATGTGGATGATCATC
AATTTTCCTCCATACCAGTATATGCTTCTTCGAAGGCCTCCCCTTCACAT
CTTGAGCGAAATCAATCTGGTCACTTCTCACGATGCCCAGTTTCTTATCG
ATATGTCGGAACCTCTGCTGCTTGTCGTGCTCGAACGAACAGTTTTCCAG
ATTTGAACGTCAATCAAACTCAAAGTGCATGTGATTCAAATGCATTGAAC
GATGTACTTGAAGATCCATCACATATTCAATCTGTGGAGCTACTAGACCT
ACGTAATCTATCATCTCCGTTAGGAGCTGTACTTACCCATGAAAGCAAGA
GTGATGCACAGCCTCAGACCGACTTTCATATTCTGATGCATCCTATGGAG
AACCCCACACAACTTGAGGCAATCAACCTACATCCGGTTGCCACGAACCT
ACCTTCGAGGGAAAGTAACCACTCTCTTTCTGCAATAGGAACGACTGACA
GTTTAGTCTCAACACAGGAGCACTTTGTTGTGCATGGCTTCCAAGGTGAT
GCAAAAGGAGAAAGAAATACGAAGACTCATAGACGTATTGAACATCATTG
A
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