Ggra4439.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4439.t1
Unique NameGgra4439.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:434127..435252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4439Ggra4439Gracilaria gracilis GNS1m malegenetig00000898_pilon 434127..435252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4439.t1Ggra4439.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 434127..435252 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4439.t1.stop1Ggra4439.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 434127..434129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4439.t1.CDS1Ggra4439.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 434127..434383 -
Ggra4439.t1.CDS2Ggra4439.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 434741..434905 -
Ggra4439.t1.CDS3Ggra4439.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 434997..435252 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4439.t1.exon1Ggra4439.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 434127..434383 -
Ggra4439.t1.exon2Ggra4439.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 434741..434905 -
Ggra4439.t1.exon3Ggra4439.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 434997..435252 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4439.t1.intron1Ggra4439.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 434384..434740 -
Ggra4439.t1.intron2Ggra4439.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 434906..434996 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4439.t1.start1Ggra4439.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 435250..435252 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4439.t1 ID=Ggra4439.t1|Name=Ggra4439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MNRAEEGGRGDESIPRGNVIGSGVGRDGNWVDGVVMFVVCCPSEANAVEG
EIDVVAGWDESHELDKVNSLGEEVEERRAKRRKEMRGDGKNSLNDGDRRI
LEGELVSFCDVVVECWDVTADDVSGVEYSESSLTEDGGVVVGLEEGVGVL
EYAGIIEVEAFEAANVLDHVVEEVELEGSEAGSVMGAEDEYGCALEGADL
VVEVGEAGVGPFGEGVASHGGEEEV*
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spliced messenger RNA

>Ggra4439.t1 ID=Ggra4439.t1|Name=Ggra4439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000898_pilon:434127..435252- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGAGCCGAGGAGGGAGGAAGAGGGGATGAGTCCATACCAAGGGG
AAACGTTATCGGAAGTGGAGTGGGTAGAGATGGAAATTGGGTGGATGGTG
TGGTTATGTTCGTCGTCTGTTGCCCATCGGAGGCAAACGCAGTTGAGGGT
GAGATCGACGTCGTCGCTGGGTGGGACGAGTCCCATGAACTGGACAAAGT
GAACTCTTTGGGAGAAGAAGTTGAGGAAAGAAGGGCGAAACGAAGAAAGG
AGATGAGAGGGGATGGCAAAAATTCGTTGAATGATGGGGACAGGAGGATT
CTGGAGGGTGAGCTCGTTTCGTTCTGTGATGTAGTTGTCGAGTGTTGGGA
TGTAACCGCCGACGACGTAAGCGGAGTTGAATATAGTGAGTCGAGCCTGA
CGGAGGACGGGGGAGTTGTCGTGGGACTTGAAGAGGGTGTGGGCGTGCTC
GAATATGCCGGCATCATTGAAGTGGAGGCCTTCGAAGCGGCGAATGTCCT
CGACCATGTGGTCGAGGAGGTGGAACTTGAGGGTTCCGAGGCTGGAAGTG
TGATGGGGGCCGAGGACGAGTACGGCTGTGCGCTTGAAGGAGCGGATTTG
GTTGTGGAGGTCGGTGAGGCGGGCGTCGGTCCATTCGGTGAAGGTGTTGC
ATCGCATGGAGGCGAGGAGGAGGTCTGA
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protein sequence of Ggra4439.t1

>Ggra4439.t1 ID=Ggra4439.t1|Name=Ggra4439.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MNRAEEGGRGDESIPRGNVIGSGVGRDGNWVDGVVMFVVCCPSEANAVEG
EIDVVAGWDESHELDKVNSLGEEVEERRAKRRKEMRGDGKNSLNDGDRRI
LEGELVSFCDVVVECWDVTADDVSGVEYSESSLTEDGGVVVGLEEGVGVL
EYAGIIEVEAFEAANVLDHVVEEVELEGSEAGSVMGAEDEYGCALEGADL
VVEVGEAGVGPFGEGVASHGGEEEV*
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mRNA from alignment at tig00000898_pilon:434127..435252-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4439.t1 ID=Ggra4439.t1|Name=Ggra4439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1126bp|location=Sequence derived from alignment at tig00000898_pilon:434127..435252- (Gracilaria gracilis GNS1m male)
ATGAACAGAGCCGAGGAGGGAGGAAGAGGGGATGAGTCCATACCAAGGGG
AAACGTTATCGGAAGTGGAGTGGGTAGAGATGGAAATTGGGTGGATGGTG
TGGTTATGTTCGTCGTCTGTTGCCCATCGGAGGCAAACGCAGTTGAGGGT
GAGATCGACGTCGTCGCTGGGTGGGACGAGTCCCATGAACTGGACAAAGT
GAACTCTTTGGGAGAAGAAGTTGAGGAAAGAAGGGCGAAACGAAGAAAGG
AGATGAGTTAGCAGACCCAGAAGATGGATGTGGGGGGGAGGAGGTGGAGC
CGGCGACGAGAACGTGGGAGAACTTTTGGGACTTGGATGGACCGAAGGAG
GGGATGGCAAAAATTCGTTGAATGATGGGGACAGGAGGATTCTGGAGGGT
GAGCTCGTTTCGTTCTGTGATGTAGTTGTCGAGTGTTGGGATGTAACCGC
CGACGACGTAAGCGGAGTTGAATATAGTGAGTCGAGCCTGACGGAGGACG
GGGGAGTTGTCGGTGAGTTGTAGGACTTCGAGAGAGAGGGTGATGAAGGA
TGGGAGGGCGTCTCTTCCGACTTCGGCAAGAATAGATAGGGTATCGGGGG
GGAAGAGGTTTTGAAGAGATTTGTGAGGGAGGTGAGGATTGCATCGAATG
AATTTGTGGGCAGTGATTAGGTCAGCGAAGGAGATGTGTTTGCCATCACG
GGCGGAACCGGGTTCTCGGGATTGGAGGAGGGAAGCGAGGCCAGGGGAGG
AGGAGGTTATGGAAGGGTTTGTGGAGACGGGATTCCAGTCTTTGATGGCA
TTGGAGCGGTGGATGGCACGAATGGTTTCTTGATGTGCGGTGGACCTGCG
CTTTGAGGTTTCGGAGTAGTGGGACTTGAAGAGGGTGTGGGCGTGCTCGA
ATATGCCGGCATCATTGAAGTGGAGGCCTTCGAAGCGGCGAATGTCCTCG
ACCATGTGGTCGAGGAGGTGGAACTTGAGGGTTCCGAGGCTGGAAGTGTG
ATGGGGGCCGAGGACGAGTACGGCTGTGCGCTTGAAGGAGCGGATTTGGT
TGTGGAGGTCGGTGAGGCGGGCGTCGGTCCATTCGGTGAAGGTGTTGCAT
CGCATGGAGGCGAGGAGGAGGTCTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:434127..435252-

>Ggra4439.t1 ID=Ggra4439.t1|Name=Ggra4439.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000898_pilon:434127..435252- (Gracilaria gracilis GNS1m male)
ATGAACAGAGCCGAGGAGGGAGGAAGAGGGGATGAGTCCATACCAAGGGG
AAACGTTATCGGAAGTGGAGTGGGTAGAGATGGAAATTGGGTGGATGGTG
TGGTTATGTTCGTCGTCTGTTGCCCATCGGAGGCAAACGCAGTTGAGGGT
GAGATCGACGTCGTCGCTGGGTGGGACGAGTCCCATGAACTGGACAAAGT
GAACTCTTTGGGAGAAGAAGTTGAGGAAAGAAGGGCGAAACGAAGAAAGG
AGATGAGAGGGGATGGCAAAAATTCGTTGAATGATGGGGACAGGAGGATT
CTGGAGGGTGAGCTCGTTTCGTTCTGTGATGTAGTTGTCGAGTGTTGGGA
TGTAACCGCCGACGACGTAAGCGGAGTTGAATATAGTGAGTCGAGCCTGA
CGGAGGACGGGGGAGTTGTCGTGGGACTTGAAGAGGGTGTGGGCGTGCTC
GAATATGCCGGCATCATTGAAGTGGAGGCCTTCGAAGCGGCGAATGTCCT
CGACCATGTGGTCGAGGAGGTGGAACTTGAGGGTTCCGAGGCTGGAAGTG
TGATGGGGGCCGAGGACGAGTACGGCTGTGCGCTTGAAGGAGCGGATTTG
GTTGTGGAGGTCGGTGAGGCGGGCGTCGGTCCATTCGGTGAAGGTGTTGC
ATCGCATGGAGGCGAGGAGGAGGTCTGA
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