Ggra4437.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4437.t1
Unique Name	Ggra4437.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	337

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:421381..422391 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI46347
Max annot lvl	4776\|Peronosporales
Evalue	2.02e-05
EggNOG OGs	2CTDP@1\|root,2RFZI@2759\|Eukaryota,3QHHE@4776\|Peronosporales

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4437	Ggra4437	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 421381..422391 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4437.t1.start1	Ggra4437.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 421381..421383 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4437.t1.CDS1	Ggra4437.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 421381..422391 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4437.t1.exon1	Ggra4437.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 421381..422391 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4437.t1.stop1	Ggra4437.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 422389..422391 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4437.t1	Ggra4437.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 421381..422391 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:421381..422391+
coding sequence from alignment at tig00000898_pilon:421381..422391+

mRNA sequence

>Ggra4437.t1 ID=Ggra4437.t1|Name=Ggra4437.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=337bp
MVVNGIGNDASLGELYRDLVPISEYRMQCLHHVVCFDCKHVLLVVAKGNN
TGVGEILYAGLLGFTEETKTNFKHLLTGIHLNAFKWVGQDADRIPKAYDE
LLKDYHASYLFSYASFYNISKAYCELVDRKGPLPPARMIRPSLFVYWNSL
KSDVDEFSRAMQSLSYTNSSENPVVSVLGRLICPQINNAAIVHRLSLANR
VSVFPDEPSSETYKKGYKALRHSVSRESTFGDFSRQLAKEYKNCYGNRRE
RPVSVSTNQSNNEINDLEAVALTSLFRRNAAEKYNRPADRTRRVSHLAAH
KKVKGNQSYCSLCSYSRVIRKNGKMARKKGGAREHL*

spliced messenger RNA

>Ggra4437.t1 ID=Ggra4437.t1|Name=Ggra4437.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000898_pilon:421381..422391+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTGAATGGGATCGGAAATGATGCAAGTTTGGGGGAGCTCTATCG
CGACCTCGTACCAATTTCGGAGTATCGCATGCAATGCTTGCATCACGTTG
TTTGCTTCGACTGCAAGCATGTACTCCTTGTAGTTGCAAAGGGGAATAAC
ACTGGTGTAGGAGAAATACTCTATGCGGGTCTATTGGGTTTTACGGAAGA
AACGAAGACAAATTTCAAGCACTTACTCACAGGAATACATCTAAACGCGT
TCAAATGGGTCGGCCAAGATGCGGACAGAATTCCGAAGGCCTATGATGAG
TTGTTGAAGGATTATCATGCCTCATATCTATTTTCTTATGCTTCATTCTA
CAACATTAGCAAAGCGTACTGTGAACTGGTTGACCGAAAAGGGCCCCTAC
CTCCAGCTCGCATGATACGTCCCTCTTTGTTTGTTTATTGGAATTCATTG
AAAAGTGATGTGGATGAATTCTCAAGAGCGATGCAATCCCTTTCTTATAC
TAATTCATCTGAGAATCCAGTGGTCAGCGTTCTTGGCCGGCTCATATGTC
CGCAAATCAATAATGCAGCCATCGTACACCGTCTGTCGCTGGCGAACCGC
GTAAGCGTTTTTCCGGATGAACCCAGCTCTGAAACATATAAGAAAGGATA
CAAAGCTCTTCGTCATTCTGTATCGAGAGAGTCAACATTTGGCGACTTTT
CCCGACAATTGGCAAAAGAGTACAAGAATTGCTACGGAAATAGACGAGAG
AGGCCTGTATCCGTTAGCACCAACCAATCTAATAATGAAATTAACGACCT
CGAGGCTGTAGCTTTGACTTCTTTGTTCAGAAGAAATGCAGCTGAAAAGT
ACAATAGGCCGGCCGACAGAACTAGACGTGTGTCTCACTTGGCTGCACAT
AAGAAGGTTAAAGGGAATCAATCTTACTGTTCGCTGTGCTCATATAGCCG
CGTAATTCGCAAAAATGGAAAGATGGCCCGGAAGAAAGGAGGTGCTAGAG
AACATCTGTAG

protein sequence of Ggra4437.t1

>Ggra4437.t1 ID=Ggra4437.t1|Name=Ggra4437.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=337bp
MVVNGIGNDASLGELYRDLVPISEYRMQCLHHVVCFDCKHVLLVVAKGNN
TGVGEILYAGLLGFTEETKTNFKHLLTGIHLNAFKWVGQDADRIPKAYDE
LLKDYHASYLFSYASFYNISKAYCELVDRKGPLPPARMIRPSLFVYWNSL
KSDVDEFSRAMQSLSYTNSSENPVVSVLGRLICPQINNAAIVHRLSLANR
VSVFPDEPSSETYKKGYKALRHSVSRESTFGDFSRQLAKEYKNCYGNRRE
RPVSVSTNQSNNEINDLEAVALTSLFRRNAAEKYNRPADRTRRVSHLAAH
KKVKGNQSYCSLCSYSRVIRKNGKMARKKGGAREHL*

mRNA from alignment at tig00000898_pilon:421381..422391+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4437.t1 ID=Ggra4437.t1|Name=Ggra4437.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000898_pilon:421381..422391+ (Gracilaria gracilis GNS1m male)
ATGGTTGTGAATGGGATCGGAAATGATGCAAGTTTGGGGGAGCTCTATCG
CGACCTCGTACCAATTTCGGAGTATCGCATGCAATGCTTGCATCACGTTG
TTTGCTTCGACTGCAAGCATGTACTCCTTGTAGTTGCAAAGGGGAATAAC
ACTGGTGTAGGAGAAATACTCTATGCGGGTCTATTGGGTTTTACGGAAGA
AACGAAGACAAATTTCAAGCACTTACTCACAGGAATACATCTAAACGCGT
TCAAATGGGTCGGCCAAGATGCGGACAGAATTCCGAAGGCCTATGATGAG
TTGTTGAAGGATTATCATGCCTCATATCTATTTTCTTATGCTTCATTCTA
CAACATTAGCAAAGCGTACTGTGAACTGGTTGACCGAAAAGGGCCCCTAC
CTCCAGCTCGCATGATACGTCCCTCTTTGTTTGTTTATTGGAATTCATTG
AAAAGTGATGTGGATGAATTCTCAAGAGCGATGCAATCCCTTTCTTATAC
TAATTCATCTGAGAATCCAGTGGTCAGCGTTCTTGGCCGGCTCATATGTC
CGCAAATCAATAATGCAGCCATCGTACACCGTCTGTCGCTGGCGAACCGC
GTAAGCGTTTTTCCGGATGAACCCAGCTCTGAAACATATAAGAAAGGATA
CAAAGCTCTTCGTCATTCTGTATCGAGAGAGTCAACATTTGGCGACTTTT
CCCGACAATTGGCAAAAGAGTACAAGAATTGCTACGGAAATAGACGAGAG
AGGCCTGTATCCGTTAGCACCAACCAATCTAATAATGAAATTAACGACCT
CGAGGCTGTAGCTTTGACTTCTTTGTTCAGAAGAAATGCAGCTGAAAAGT
ACAATAGGCCGGCCGACAGAACTAGACGTGTGTCTCACTTGGCTGCACAT
AAGAAGGTTAAAGGGAATCAATCTTACTGTTCGCTGTGCTCATATAGCCG
CGTAATTCGCAAAAATGGAAAGATGGCCCGGAAGAAAGGAGGTGCTAGAG
AACATCTGTAG

Coding sequence (CDS) from alignment at tig00000898_pilon:421381..422391+

>Ggra4437.t1 ID=Ggra4437.t1|Name=Ggra4437.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00000898_pilon:421381..422391+ (Gracilaria gracilis GNS1m male)
ATGGTTGTGAATGGGATCGGAAATGATGCAAGTTTGGGGGAGCTCTATCG
CGACCTCGTACCAATTTCGGAGTATCGCATGCAATGCTTGCATCACGTTG
TTTGCTTCGACTGCAAGCATGTACTCCTTGTAGTTGCAAAGGGGAATAAC
ACTGGTGTAGGAGAAATACTCTATGCGGGTCTATTGGGTTTTACGGAAGA
AACGAAGACAAATTTCAAGCACTTACTCACAGGAATACATCTAAACGCGT
TCAAATGGGTCGGCCAAGATGCGGACAGAATTCCGAAGGCCTATGATGAG
TTGTTGAAGGATTATCATGCCTCATATCTATTTTCTTATGCTTCATTCTA
CAACATTAGCAAAGCGTACTGTGAACTGGTTGACCGAAAAGGGCCCCTAC
CTCCAGCTCGCATGATACGTCCCTCTTTGTTTGTTTATTGGAATTCATTG
AAAAGTGATGTGGATGAATTCTCAAGAGCGATGCAATCCCTTTCTTATAC
TAATTCATCTGAGAATCCAGTGGTCAGCGTTCTTGGCCGGCTCATATGTC
CGCAAATCAATAATGCAGCCATCGTACACCGTCTGTCGCTGGCGAACCGC
GTAAGCGTTTTTCCGGATGAACCCAGCTCTGAAACATATAAGAAAGGATA
CAAAGCTCTTCGTCATTCTGTATCGAGAGAGTCAACATTTGGCGACTTTT
CCCGACAATTGGCAAAAGAGTACAAGAATTGCTACGGAAATAGACGAGAG
AGGCCTGTATCCGTTAGCACCAACCAATCTAATAATGAAATTAACGACCT
CGAGGCTGTAGCTTTGACTTCTTTGTTCAGAAGAAATGCAGCTGAAAAGT
ACAATAGGCCGGCCGACAGAACTAGACGTGTGTCTCACTTGGCTGCACAT
AAGAAGGTTAAAGGGAATCAATCTTACTGTTCGCTGTGCTCATATAGCCG
CGTAATTCGCAAAAATGGAAAGATGGCCCGGAAGAAAGGAGGTGCTAGAG
AACATCTGTAG