Ggra4434.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4434.t1
Unique NameGgra4434.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:415586..416356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4434Ggra4434Gracilaria gracilis GNS1m malegenetig00000898_pilon 415586..416356 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4434.t1.start1Ggra4434.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 415586..415588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4434.t1.CDS1Ggra4434.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 415586..416356 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4434.t1.exon1Ggra4434.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 415586..416356 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4434.t1.stop1Ggra4434.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 416354..416356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4434.t1Ggra4434.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 415586..416356 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4434.t1 ID=Ggra4434.t1|Name=Ggra4434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=257bp
MLRVPRTRVLTLSLKNGVQSSDHHITHGESETRFVAAFKNFVLPSIEREM
CGLSRSGCVFLSKDTDVSIILGLGRGLCDFNTINVLGESVIEIDTLRKSL
SKHNVTLKMSGYVYVLVGCDFTPETFGVNHDQYLRALVRHSDRFTGMGCD
TDVLHHQCEFLMLLAYLEKRSISRLVNLSRREELYKRWEDDGLGTLKLSK
KKQSLYTSEYDVGTKDLRLDVRRFIADSAKSMSELVPAKEHIVLQSKRVQ
LIVDKY*
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spliced messenger RNA

>Ggra4434.t1 ID=Ggra4434.t1|Name=Ggra4434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000898_pilon:415586..416356+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGGGTGCCGAGGACGAGGGTGCTAACGCTTTCACTAAAGAATGG
CGTTCAGAGTTCTGATCATCATATTACACATGGGGAGTCCGAAACGCGCT
TCGTTGCGGCGTTTAAGAATTTTGTTCTGCCGTCTATCGAGCGAGAAATG
TGTGGATTATCAAGGAGTGGTTGCGTTTTCCTTTCAAAAGACACTGATGT
TTCTATAATACTTGGTTTGGGAAGGGGCCTATGTGACTTTAATACTATTA
ATGTTCTCGGCGAATCTGTAATAGAAATTGATACGTTAAGGAAAAGCTTG
TCTAAACACAATGTGACTCTCAAAATGTCAGGTTACGTATATGTTTTGGT
AGGCTGCGACTTCACGCCGGAAACCTTTGGAGTTAATCACGATCAGTACT
TGAGGGCTTTGGTAAGGCATTCCGACCGGTTTACAGGAATGGGGTGTGAT
ACAGATGTTCTTCATCATCAATGCGAGTTTTTGATGTTGTTGGCCTATTT
AGAGAAACGAAGCATATCTCGACTTGTGAACCTATCACGACGCGAAGAGC
TCTACAAACGCTGGGAGGATGACGGTTTGGGAACTTTGAAGCTTTCAAAG
AAAAAGCAATCGCTTTACACGAGTGAGTACGATGTAGGTACGAAGGACTT
GCGTTTGGACGTGCGGCGTTTTATTGCTGACTCTGCAAAGTCAATGTCAG
AATTGGTCCCAGCAAAGGAGCATATTGTTTTGCAATCAAAACGTGTTCAG
CTCATTGTGGATAAATATTGA
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protein sequence of Ggra4434.t1

>Ggra4434.t1 ID=Ggra4434.t1|Name=Ggra4434.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MLRVPRTRVLTLSLKNGVQSSDHHITHGESETRFVAAFKNFVLPSIEREM
CGLSRSGCVFLSKDTDVSIILGLGRGLCDFNTINVLGESVIEIDTLRKSL
SKHNVTLKMSGYVYVLVGCDFTPETFGVNHDQYLRALVRHSDRFTGMGCD
TDVLHHQCEFLMLLAYLEKRSISRLVNLSRREELYKRWEDDGLGTLKLSK
KKQSLYTSEYDVGTKDLRLDVRRFIADSAKSMSELVPAKEHIVLQSKRVQ
LIVDKY*
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mRNA from alignment at tig00000898_pilon:415586..416356+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4434.t1 ID=Ggra4434.t1|Name=Ggra4434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000898_pilon:415586..416356+ (Gracilaria gracilis GNS1m male)
ATGCTTCGGGTGCCGAGGACGAGGGTGCTAACGCTTTCACTAAAGAATGG
CGTTCAGAGTTCTGATCATCATATTACACATGGGGAGTCCGAAACGCGCT
TCGTTGCGGCGTTTAAGAATTTTGTTCTGCCGTCTATCGAGCGAGAAATG
TGTGGATTATCAAGGAGTGGTTGCGTTTTCCTTTCAAAAGACACTGATGT
TTCTATAATACTTGGTTTGGGAAGGGGCCTATGTGACTTTAATACTATTA
ATGTTCTCGGCGAATCTGTAATAGAAATTGATACGTTAAGGAAAAGCTTG
TCTAAACACAATGTGACTCTCAAAATGTCAGGTTACGTATATGTTTTGGT
AGGCTGCGACTTCACGCCGGAAACCTTTGGAGTTAATCACGATCAGTACT
TGAGGGCTTTGGTAAGGCATTCCGACCGGTTTACAGGAATGGGGTGTGAT
ACAGATGTTCTTCATCATCAATGCGAGTTTTTGATGTTGTTGGCCTATTT
AGAGAAACGAAGCATATCTCGACTTGTGAACCTATCACGACGCGAAGAGC
TCTACAAACGCTGGGAGGATGACGGTTTGGGAACTTTGAAGCTTTCAAAG
AAAAAGCAATCGCTTTACACGAGTGAGTACGATGTAGGTACGAAGGACTT
GCGTTTGGACGTGCGGCGTTTTATTGCTGACTCTGCAAAGTCAATGTCAG
AATTGGTCCCAGCAAAGGAGCATATTGTTTTGCAATCAAAACGTGTTCAG
CTCATTGTGGATAAATATTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:415586..416356+

>Ggra4434.t1 ID=Ggra4434.t1|Name=Ggra4434.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000898_pilon:415586..416356+ (Gracilaria gracilis GNS1m male)
ATGCTTCGGGTGCCGAGGACGAGGGTGCTAACGCTTTCACTAAAGAATGG
CGTTCAGAGTTCTGATCATCATATTACACATGGGGAGTCCGAAACGCGCT
TCGTTGCGGCGTTTAAGAATTTTGTTCTGCCGTCTATCGAGCGAGAAATG
TGTGGATTATCAAGGAGTGGTTGCGTTTTCCTTTCAAAAGACACTGATGT
TTCTATAATACTTGGTTTGGGAAGGGGCCTATGTGACTTTAATACTATTA
ATGTTCTCGGCGAATCTGTAATAGAAATTGATACGTTAAGGAAAAGCTTG
TCTAAACACAATGTGACTCTCAAAATGTCAGGTTACGTATATGTTTTGGT
AGGCTGCGACTTCACGCCGGAAACCTTTGGAGTTAATCACGATCAGTACT
TGAGGGCTTTGGTAAGGCATTCCGACCGGTTTACAGGAATGGGGTGTGAT
ACAGATGTTCTTCATCATCAATGCGAGTTTTTGATGTTGTTGGCCTATTT
AGAGAAACGAAGCATATCTCGACTTGTGAACCTATCACGACGCGAAGAGC
TCTACAAACGCTGGGAGGATGACGGTTTGGGAACTTTGAAGCTTTCAAAG
AAAAAGCAATCGCTTTACACGAGTGAGTACGATGTAGGTACGAAGGACTT
GCGTTTGGACGTGCGGCGTTTTATTGCTGACTCTGCAAAGTCAATGTCAG
AATTGGTCCCAGCAAAGGAGCATATTGTTTTGCAATCAAAACGTGTTCAG
CTCATTGTGGATAAATATTGA
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