Ggra4430.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4430.t1
Unique NameGgra4430.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length520
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:392943..394502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707902.1
Preferred nameHOM3
PFAMsAA_kinase,ACT,ACT_7
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00043
KEGG koko:K00928
KEGG ReactionR00480
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006531,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue7.15e-196
EggNOG OGsCOG0527@1|root,KOG0456@2759|Eukaryota
EC2.7.2.4
Descriptionaspartate kinase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4430Ggra4430Gracilaria gracilis GNS1m malegenetig00000898_pilon 392943..394502 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4430.t1.stop1Ggra4430.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 392943..392945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4430.t1.CDS1Ggra4430.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 392943..394502 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4430.t1.exon1Ggra4430.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 392943..394502 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4430.t1.start1Ggra4430.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 394500..394502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4430.t1Ggra4430.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 392943..394502 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4430.t1 ID=Ggra4430.t1|Name=Ggra4430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=520bp
METAFVSFLPLDTRRAPNTRNVLSRRSKRLHLANKLRHSNKPHRTPVATS
TTTPPVVPPPLEAPAKLDRIVCKFGGSSLANADRLKEVTKLVHRQIEGSK
KMPIVVLSAMGPSTNELLTAGERALNHGIVDTSSIRLRAYEACESLSLNK
QDLVDPLLHNLDELLVGIKFIKELSPRTLDYLVSFGERLSVRIFAAHLRR
NEDIPAEHVDAYDAGFITDSSFTRAELLEQSFENIKHFFDTCIKDDHLAV
VTGFIAKDRNGDVTTLGRGGSDLTAATIGAALGTSEVQVWKDVDGILSTD
PRIVTEALPIPSISFEEAAEMAFFGAKVLHPIAMQPAMKYNVPVRVKNSY
NPDHPGTVILRERALESTNPVTAISVKRNVQIVDIVSTRMLGASGFLAEV
FKCFAFHKVSVDMIATSEVSISMTLDNNVCNNETLIQLKDDLSEYAFVSL
SEKNKAIISLVSDSSRSSSVVGRAVSALDRAGVIVLMISQGASKFNISIT
IEAADANTAVQVIHKEFFS*
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spliced messenger RNA

>Ggra4430.t1 ID=Ggra4430.t1|Name=Ggra4430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00000898_pilon:392943..394502- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACTGCATTCGTGTCATTCTTACCGCTTGACACACGACGTGCTCC
AAACACACGCAACGTGCTTTCGCGCCGCAGCAAGCGCCTCCACTTGGCGA
ACAAACTGCGTCATTCAAACAAGCCGCATCGCACGCCCGTCGCTACGTCC
ACAACTACTCCGCCTGTTGTTCCGCCACCGCTCGAAGCCCCGGCGAAGCT
TGACCGCATAGTATGTAAGTTCGGTGGCTCAAGCCTTGCAAATGCCGATC
GTCTAAAAGAGGTCACCAAGCTTGTTCACAGGCAGATCGAAGGCTCGAAG
AAGATGCCTATTGTCGTTTTATCAGCCATGGGACCCAGCACGAATGAGCT
GTTGACTGCTGGTGAAAGAGCTCTTAATCACGGCATCGTAGACACCTCTT
CTATACGCCTCCGGGCCTATGAAGCCTGCGAAAGCCTCTCTCTCAACAAA
CAGGACCTTGTGGACCCATTGCTGCACAACTTGGATGAGCTTCTAGTTGG
TATCAAGTTCATCAAAGAACTCAGCCCTCGTACGTTGGACTACCTGGTCA
GCTTTGGTGAGCGATTGAGTGTGCGCATATTTGCCGCACATTTGCGCCGT
AACGAAGATATACCTGCCGAACATGTCGATGCGTATGACGCCGGTTTCAT
CACAGACTCAAGTTTCACTCGCGCGGAACTGCTCGAACAATCGTTTGAAA
ACATTAAGCATTTCTTTGATACTTGTATCAAGGATGATCATCTTGCAGTC
GTCACTGGTTTCATCGCGAAGGATCGGAACGGTGATGTTACCACTTTGGG
CCGTGGTGGCAGTGATCTAACTGCTGCCACCATAGGTGCCGCGCTTGGTA
CATCAGAAGTTCAAGTATGGAAGGACGTGGATGGCATTCTGTCCACAGAT
CCCCGTATTGTGACAGAGGCGCTGCCAATCCCGTCTATATCTTTTGAAGA
AGCTGCTGAGATGGCTTTCTTTGGTGCTAAAGTTTTGCACCCGATCGCCA
TGCAGCCCGCTATGAAGTACAATGTACCCGTGCGTGTGAAGAACAGCTAC
AATCCCGATCATCCCGGAACTGTCATTCTGCGAGAACGGGCTCTTGAGTC
AACAAATCCGGTCACCGCTATCAGTGTCAAGAGAAACGTTCAGATCGTTG
ATATCGTGAGCACGCGTATGCTAGGTGCATCAGGATTTCTAGCTGAGGTG
TTTAAGTGCTTTGCGTTTCACAAGGTTTCTGTCGATATGATCGCTACATC
GGAGGTGTCGATCTCCATGACGCTTGACAACAATGTTTGCAACAATGAGA
CACTGATACAGTTGAAGGATGATCTCAGTGAATATGCCTTTGTATCACTC
TCGGAGAAAAATAAGGCCATTATCTCGCTTGTTTCCGATTCGTCAAGGAG
CAGCAGTGTTGTGGGCCGTGCCGTCTCAGCACTTGATAGAGCTGGTGTTA
TTGTCTTAATGATTTCTCAAGGGGCAAGCAAGTTCAATATATCCATCACT
ATCGAGGCTGCCGATGCGAACACTGCAGTTCAAGTTATTCATAAGGAGTT
CTTCTCGTGA
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protein sequence of Ggra4430.t1

>Ggra4430.t1 ID=Ggra4430.t1|Name=Ggra4430.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=520bp
METAFVSFLPLDTRRAPNTRNVLSRRSKRLHLANKLRHSNKPHRTPVATS
TTTPPVVPPPLEAPAKLDRIVCKFGGSSLANADRLKEVTKLVHRQIEGSK
KMPIVVLSAMGPSTNELLTAGERALNHGIVDTSSIRLRAYEACESLSLNK
QDLVDPLLHNLDELLVGIKFIKELSPRTLDYLVSFGERLSVRIFAAHLRR
NEDIPAEHVDAYDAGFITDSSFTRAELLEQSFENIKHFFDTCIKDDHLAV
VTGFIAKDRNGDVTTLGRGGSDLTAATIGAALGTSEVQVWKDVDGILSTD
PRIVTEALPIPSISFEEAAEMAFFGAKVLHPIAMQPAMKYNVPVRVKNSY
NPDHPGTVILRERALESTNPVTAISVKRNVQIVDIVSTRMLGASGFLAEV
FKCFAFHKVSVDMIATSEVSISMTLDNNVCNNETLIQLKDDLSEYAFVSL
SEKNKAIISLVSDSSRSSSVVGRAVSALDRAGVIVLMISQGASKFNISIT
IEAADANTAVQVIHKEFFS*
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mRNA from alignment at tig00000898_pilon:392943..394502-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4430.t1 ID=Ggra4430.t1|Name=Ggra4430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00000898_pilon:392943..394502- (Gracilaria gracilis GNS1m male)
ATGGAAACTGCATTCGTGTCATTCTTACCGCTTGACACACGACGTGCTCC
AAACACACGCAACGTGCTTTCGCGCCGCAGCAAGCGCCTCCACTTGGCGA
ACAAACTGCGTCATTCAAACAAGCCGCATCGCACGCCCGTCGCTACGTCC
ACAACTACTCCGCCTGTTGTTCCGCCACCGCTCGAAGCCCCGGCGAAGCT
TGACCGCATAGTATGTAAGTTCGGTGGCTCAAGCCTTGCAAATGCCGATC
GTCTAAAAGAGGTCACCAAGCTTGTTCACAGGCAGATCGAAGGCTCGAAG
AAGATGCCTATTGTCGTTTTATCAGCCATGGGACCCAGCACGAATGAGCT
GTTGACTGCTGGTGAAAGAGCTCTTAATCACGGCATCGTAGACACCTCTT
CTATACGCCTCCGGGCCTATGAAGCCTGCGAAAGCCTCTCTCTCAACAAA
CAGGACCTTGTGGACCCATTGCTGCACAACTTGGATGAGCTTCTAGTTGG
TATCAAGTTCATCAAAGAACTCAGCCCTCGTACGTTGGACTACCTGGTCA
GCTTTGGTGAGCGATTGAGTGTGCGCATATTTGCCGCACATTTGCGCCGT
AACGAAGATATACCTGCCGAACATGTCGATGCGTATGACGCCGGTTTCAT
CACAGACTCAAGTTTCACTCGCGCGGAACTGCTCGAACAATCGTTTGAAA
ACATTAAGCATTTCTTTGATACTTGTATCAAGGATGATCATCTTGCAGTC
GTCACTGGTTTCATCGCGAAGGATCGGAACGGTGATGTTACCACTTTGGG
CCGTGGTGGCAGTGATCTAACTGCTGCCACCATAGGTGCCGCGCTTGGTA
CATCAGAAGTTCAAGTATGGAAGGACGTGGATGGCATTCTGTCCACAGAT
CCCCGTATTGTGACAGAGGCGCTGCCAATCCCGTCTATATCTTTTGAAGA
AGCTGCTGAGATGGCTTTCTTTGGTGCTAAAGTTTTGCACCCGATCGCCA
TGCAGCCCGCTATGAAGTACAATGTACCCGTGCGTGTGAAGAACAGCTAC
AATCCCGATCATCCCGGAACTGTCATTCTGCGAGAACGGGCTCTTGAGTC
AACAAATCCGGTCACCGCTATCAGTGTCAAGAGAAACGTTCAGATCGTTG
ATATCGTGAGCACGCGTATGCTAGGTGCATCAGGATTTCTAGCTGAGGTG
TTTAAGTGCTTTGCGTTTCACAAGGTTTCTGTCGATATGATCGCTACATC
GGAGGTGTCGATCTCCATGACGCTTGACAACAATGTTTGCAACAATGAGA
CACTGATACAGTTGAAGGATGATCTCAGTGAATATGCCTTTGTATCACTC
TCGGAGAAAAATAAGGCCATTATCTCGCTTGTTTCCGATTCGTCAAGGAG
CAGCAGTGTTGTGGGCCGTGCCGTCTCAGCACTTGATAGAGCTGGTGTTA
TTGTCTTAATGATTTCTCAAGGGGCAAGCAAGTTCAATATATCCATCACT
ATCGAGGCTGCCGATGCGAACACTGCAGTTCAAGTTATTCATAAGGAGTT
CTTCTCGTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:392943..394502-

>Ggra4430.t1 ID=Ggra4430.t1|Name=Ggra4430.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1560bp|location=Sequence derived from alignment at tig00000898_pilon:392943..394502- (Gracilaria gracilis GNS1m male)
ATGGAAACTGCATTCGTGTCATTCTTACCGCTTGACACACGACGTGCTCC
AAACACACGCAACGTGCTTTCGCGCCGCAGCAAGCGCCTCCACTTGGCGA
ACAAACTGCGTCATTCAAACAAGCCGCATCGCACGCCCGTCGCTACGTCC
ACAACTACTCCGCCTGTTGTTCCGCCACCGCTCGAAGCCCCGGCGAAGCT
TGACCGCATAGTATGTAAGTTCGGTGGCTCAAGCCTTGCAAATGCCGATC
GTCTAAAAGAGGTCACCAAGCTTGTTCACAGGCAGATCGAAGGCTCGAAG
AAGATGCCTATTGTCGTTTTATCAGCCATGGGACCCAGCACGAATGAGCT
GTTGACTGCTGGTGAAAGAGCTCTTAATCACGGCATCGTAGACACCTCTT
CTATACGCCTCCGGGCCTATGAAGCCTGCGAAAGCCTCTCTCTCAACAAA
CAGGACCTTGTGGACCCATTGCTGCACAACTTGGATGAGCTTCTAGTTGG
TATCAAGTTCATCAAAGAACTCAGCCCTCGTACGTTGGACTACCTGGTCA
GCTTTGGTGAGCGATTGAGTGTGCGCATATTTGCCGCACATTTGCGCCGT
AACGAAGATATACCTGCCGAACATGTCGATGCGTATGACGCCGGTTTCAT
CACAGACTCAAGTTTCACTCGCGCGGAACTGCTCGAACAATCGTTTGAAA
ACATTAAGCATTTCTTTGATACTTGTATCAAGGATGATCATCTTGCAGTC
GTCACTGGTTTCATCGCGAAGGATCGGAACGGTGATGTTACCACTTTGGG
CCGTGGTGGCAGTGATCTAACTGCTGCCACCATAGGTGCCGCGCTTGGTA
CATCAGAAGTTCAAGTATGGAAGGACGTGGATGGCATTCTGTCCACAGAT
CCCCGTATTGTGACAGAGGCGCTGCCAATCCCGTCTATATCTTTTGAAGA
AGCTGCTGAGATGGCTTTCTTTGGTGCTAAAGTTTTGCACCCGATCGCCA
TGCAGCCCGCTATGAAGTACAATGTACCCGTGCGTGTGAAGAACAGCTAC
AATCCCGATCATCCCGGAACTGTCATTCTGCGAGAACGGGCTCTTGAGTC
AACAAATCCGGTCACCGCTATCAGTGTCAAGAGAAACGTTCAGATCGTTG
ATATCGTGAGCACGCGTATGCTAGGTGCATCAGGATTTCTAGCTGAGGTG
TTTAAGTGCTTTGCGTTTCACAAGGTTTCTGTCGATATGATCGCTACATC
GGAGGTGTCGATCTCCATGACGCTTGACAACAATGTTTGCAACAATGAGA
CACTGATACAGTTGAAGGATGATCTCAGTGAATATGCCTTTGTATCACTC
TCGGAGAAAAATAAGGCCATTATCTCGCTTGTTTCCGATTCGTCAAGGAG
CAGCAGTGTTGTGGGCCGTGCCGTCTCAGCACTTGATAGAGCTGGTGTTA
TTGTCTTAATGATTTCTCAAGGGGCAAGCAAGTTCAATATATCCATCACT
ATCGAGGCTGCCGATGCGAACACTGCAGTTCAAGTTATTCATAAGGAGTT
CTTCTCGTGA
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