Ggra4428.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4428.t1
Unique NameGgra4428.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:389161..390462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706060.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue6.44e-36
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4428Ggra4428Gracilaria gracilis GNS1m malegenetig00000898_pilon 389161..390462 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4428.t1.start1Ggra4428.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 389161..389163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4428.t1.CDS1Ggra4428.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 389161..390462 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4428.t1.exon1Ggra4428.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 389161..390462 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4428.t1.stop1Ggra4428.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 390460..390462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4428.t1Ggra4428.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 389161..390462 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4428.t1 ID=Ggra4428.t1|Name=Ggra4428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp
MSDKRLSDSLAFQCRQRRSVRVVGVAFLAFLWCTTYISTSKHSLPSVLRA
GSVLIPKRGVKLALFIQAYDRTLPLLPSLLDAIWHPDNIYAIHIDKRTDP
DLIKPLERLLSNANYSSNVHLIPRQYVTYLGITTVLNTLNAISFFLEKDD
NWDYFINLSAADYPLVTAKQLRDILGQRDVLGRQLSFVQTTNYSNPASGR
IYKARFGRLYVDTATYSVIRPHDPYDEEVKEQPCVRGCLRSAGPAVHPLH
DDDIPVKIVKSEAWIMLHRSAAEFALNSGLSRQLIAFFANVHCPEEFFFS
TLLTRAKETRDSIVHDAFRLVLWGVFKKKSRPPAIDSGDIPNMKELITDK
GGLFVRKRMKTDSDMRSYIDGRLLGTSKEAQDDREMRKSSETFSRRQSMR
VTCAIRYKVGEAAEANSVSYRRCVQDSVKATPL*
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spliced messenger RNA

>Ggra4428.t1 ID=Ggra4428.t1|Name=Ggra4428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000898_pilon:389161..390462+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGACAAGCGACTCAGTGATTCTCTGGCCTTTCAATGCCGTCAACG
TCGTTCAGTTCGCGTTGTGGGTGTGGCATTTCTGGCATTTTTGTGGTGTA
CAACATACATATCAACCTCTAAACACTCCTTGCCGTCTGTGCTTCGTGCC
GGCTCCGTGCTCATTCCCAAACGCGGTGTGAAACTGGCATTGTTCATCCA
GGCGTATGACCGAACTCTTCCTTTGTTGCCGTCATTACTAGACGCAATAT
GGCATCCAGACAACATCTATGCCATTCATATCGACAAGCGCACTGACCCG
GACCTCATAAAACCGCTTGAGCGTCTGCTTAGCAATGCAAATTACTCGTC
AAACGTGCATCTTATTCCGCGTCAATACGTCACATATCTTGGTATCACCA
CCGTGCTCAACACTCTCAACGCCATTTCGTTCTTCCTTGAGAAAGATGAC
AACTGGGATTACTTCATCAACCTTAGTGCGGCCGACTATCCGCTGGTCAC
GGCCAAACAACTACGTGACATTCTTGGTCAGCGCGACGTGCTAGGCAGAC
AGTTGAGCTTTGTTCAGACCACCAACTATTCCAACCCCGCTTCCGGCAGA
ATTTACAAGGCACGTTTCGGTCGGCTTTACGTAGACACGGCCACGTACAG
TGTGATCCGACCTCATGATCCGTACGACGAGGAGGTGAAGGAACAACCGT
GTGTTCGTGGCTGCTTGCGAAGTGCTGGCCCGGCTGTTCACCCTTTGCAC
GACGACGATATTCCGGTGAAAATCGTCAAATCCGAGGCGTGGATCATGCT
GCATCGATCGGCTGCTGAGTTTGCTCTCAACTCGGGCCTCTCTCGTCAGC
TGATTGCATTCTTTGCCAACGTTCATTGTCCGGAGGAATTCTTCTTCAGC
ACGTTGTTGACGCGCGCGAAAGAAACGAGGGATAGCATTGTTCATGACGC
GTTTCGACTTGTGCTGTGGGGGGTGTTCAAGAAGAAGAGCCGCCCGCCTG
CAATTGACTCGGGAGACATTCCCAACATGAAGGAGTTGATCACGGACAAG
GGCGGGTTGTTTGTTCGGAAGCGCATGAAGACAGACTCGGACATGCGTTC
GTACATCGATGGTCGTCTGTTGGGCACTTCCAAAGAGGCTCAGGATGACA
GGGAGATGCGCAAGTCGTCCGAAACGTTCTCCCGTCGACAGAGCATGCGC
GTGACATGTGCCATCCGGTACAAGGTCGGGGAAGCCGCTGAGGCAAACAG
CGTGTCATACAGACGATGCGTGCAGGACTCGGTAAAGGCCACGCCTCTTT
GA
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protein sequence of Ggra4428.t1

>Ggra4428.t1 ID=Ggra4428.t1|Name=Ggra4428.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MSDKRLSDSLAFQCRQRRSVRVVGVAFLAFLWCTTYISTSKHSLPSVLRA
GSVLIPKRGVKLALFIQAYDRTLPLLPSLLDAIWHPDNIYAIHIDKRTDP
DLIKPLERLLSNANYSSNVHLIPRQYVTYLGITTVLNTLNAISFFLEKDD
NWDYFINLSAADYPLVTAKQLRDILGQRDVLGRQLSFVQTTNYSNPASGR
IYKARFGRLYVDTATYSVIRPHDPYDEEVKEQPCVRGCLRSAGPAVHPLH
DDDIPVKIVKSEAWIMLHRSAAEFALNSGLSRQLIAFFANVHCPEEFFFS
TLLTRAKETRDSIVHDAFRLVLWGVFKKKSRPPAIDSGDIPNMKELITDK
GGLFVRKRMKTDSDMRSYIDGRLLGTSKEAQDDREMRKSSETFSRRQSMR
VTCAIRYKVGEAAEANSVSYRRCVQDSVKATPL*
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mRNA from alignment at tig00000898_pilon:389161..390462+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4428.t1 ID=Ggra4428.t1|Name=Ggra4428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000898_pilon:389161..390462+ (Gracilaria gracilis GNS1m male)
ATGTCGGACAAGCGACTCAGTGATTCTCTGGCCTTTCAATGCCGTCAACG
TCGTTCAGTTCGCGTTGTGGGTGTGGCATTTCTGGCATTTTTGTGGTGTA
CAACATACATATCAACCTCTAAACACTCCTTGCCGTCTGTGCTTCGTGCC
GGCTCCGTGCTCATTCCCAAACGCGGTGTGAAACTGGCATTGTTCATCCA
GGCGTATGACCGAACTCTTCCTTTGTTGCCGTCATTACTAGACGCAATAT
GGCATCCAGACAACATCTATGCCATTCATATCGACAAGCGCACTGACCCG
GACCTCATAAAACCGCTTGAGCGTCTGCTTAGCAATGCAAATTACTCGTC
AAACGTGCATCTTATTCCGCGTCAATACGTCACATATCTTGGTATCACCA
CCGTGCTCAACACTCTCAACGCCATTTCGTTCTTCCTTGAGAAAGATGAC
AACTGGGATTACTTCATCAACCTTAGTGCGGCCGACTATCCGCTGGTCAC
GGCCAAACAACTACGTGACATTCTTGGTCAGCGCGACGTGCTAGGCAGAC
AGTTGAGCTTTGTTCAGACCACCAACTATTCCAACCCCGCTTCCGGCAGA
ATTTACAAGGCACGTTTCGGTCGGCTTTACGTAGACACGGCCACGTACAG
TGTGATCCGACCTCATGATCCGTACGACGAGGAGGTGAAGGAACAACCGT
GTGTTCGTGGCTGCTTGCGAAGTGCTGGCCCGGCTGTTCACCCTTTGCAC
GACGACGATATTCCGGTGAAAATCGTCAAATCCGAGGCGTGGATCATGCT
GCATCGATCGGCTGCTGAGTTTGCTCTCAACTCGGGCCTCTCTCGTCAGC
TGATTGCATTCTTTGCCAACGTTCATTGTCCGGAGGAATTCTTCTTCAGC
ACGTTGTTGACGCGCGCGAAAGAAACGAGGGATAGCATTGTTCATGACGC
GTTTCGACTTGTGCTGTGGGGGGTGTTCAAGAAGAAGAGCCGCCCGCCTG
CAATTGACTCGGGAGACATTCCCAACATGAAGGAGTTGATCACGGACAAG
GGCGGGTTGTTTGTTCGGAAGCGCATGAAGACAGACTCGGACATGCGTTC
GTACATCGATGGTCGTCTGTTGGGCACTTCCAAAGAGGCTCAGGATGACA
GGGAGATGCGCAAGTCGTCCGAAACGTTCTCCCGTCGACAGAGCATGCGC
GTGACATGTGCCATCCGGTACAAGGTCGGGGAAGCCGCTGAGGCAAACAG
CGTGTCATACAGACGATGCGTGCAGGACTCGGTAAAGGCCACGCCTCTTT
GA
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Coding sequence (CDS) from alignment at tig00000898_pilon:389161..390462+

>Ggra4428.t1 ID=Ggra4428.t1|Name=Ggra4428.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000898_pilon:389161..390462+ (Gracilaria gracilis GNS1m male)
ATGTCGGACAAGCGACTCAGTGATTCTCTGGCCTTTCAATGCCGTCAACG
TCGTTCAGTTCGCGTTGTGGGTGTGGCATTTCTGGCATTTTTGTGGTGTA
CAACATACATATCAACCTCTAAACACTCCTTGCCGTCTGTGCTTCGTGCC
GGCTCCGTGCTCATTCCCAAACGCGGTGTGAAACTGGCATTGTTCATCCA
GGCGTATGACCGAACTCTTCCTTTGTTGCCGTCATTACTAGACGCAATAT
GGCATCCAGACAACATCTATGCCATTCATATCGACAAGCGCACTGACCCG
GACCTCATAAAACCGCTTGAGCGTCTGCTTAGCAATGCAAATTACTCGTC
AAACGTGCATCTTATTCCGCGTCAATACGTCACATATCTTGGTATCACCA
CCGTGCTCAACACTCTCAACGCCATTTCGTTCTTCCTTGAGAAAGATGAC
AACTGGGATTACTTCATCAACCTTAGTGCGGCCGACTATCCGCTGGTCAC
GGCCAAACAACTACGTGACATTCTTGGTCAGCGCGACGTGCTAGGCAGAC
AGTTGAGCTTTGTTCAGACCACCAACTATTCCAACCCCGCTTCCGGCAGA
ATTTACAAGGCACGTTTCGGTCGGCTTTACGTAGACACGGCCACGTACAG
TGTGATCCGACCTCATGATCCGTACGACGAGGAGGTGAAGGAACAACCGT
GTGTTCGTGGCTGCTTGCGAAGTGCTGGCCCGGCTGTTCACCCTTTGCAC
GACGACGATATTCCGGTGAAAATCGTCAAATCCGAGGCGTGGATCATGCT
GCATCGATCGGCTGCTGAGTTTGCTCTCAACTCGGGCCTCTCTCGTCAGC
TGATTGCATTCTTTGCCAACGTTCATTGTCCGGAGGAATTCTTCTTCAGC
ACGTTGTTGACGCGCGCGAAAGAAACGAGGGATAGCATTGTTCATGACGC
GTTTCGACTTGTGCTGTGGGGGGTGTTCAAGAAGAAGAGCCGCCCGCCTG
CAATTGACTCGGGAGACATTCCCAACATGAAGGAGTTGATCACGGACAAG
GGCGGGTTGTTTGTTCGGAAGCGCATGAAGACAGACTCGGACATGCGTTC
GTACATCGATGGTCGTCTGTTGGGCACTTCCAAAGAGGCTCAGGATGACA
GGGAGATGCGCAAGTCGTCCGAAACGTTCTCCCGTCGACAGAGCATGCGC
GTGACATGTGCCATCCGGTACAAGGTCGGGGAAGCCGCTGAGGCAAACAG
CGTGTCATACAGACGATGCGTGCAGGACTCGGTAAAGGCCACGCCTCTTT
GA
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