Ggra4426.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4426.t1
Unique Name	Ggra4426.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	635

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:382888..384792 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6669.EFX74820
PFAMs	Trypsin
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K01324,ko:K09626,ko:K09628
KEGG Pathway	ko04610,map04610
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue	8.2e-29
EggNOG OGs	COG5640@1\|root,KOG3627@2759\|Eukaryota,39WQ0@33154\|Opisthokonta,3BMB1@33208\|Metazoa,3D3W2@33213\|Bilateria,41W95@6656\|Arthropoda
EC	3.4.21.34
Description	serine-type endopeptidase activity. It is involved in the biological process described with proteolysis
COG category	O
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4426	Ggra4426	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 382888..384792 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4426.t1.start1	Ggra4426.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 382888..382890 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4426.t1.CDS1	Ggra4426.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 382888..384792 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4426.t1.exon1	Ggra4426.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 382888..384792 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4426.t1.stop1	Ggra4426.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 384790..384792 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4426.t1	Ggra4426.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 382888..384792 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:382888..384792+
coding sequence from alignment at tig00000898_pilon:382888..384792+

mRNA sequence

>Ggra4426.t1 ID=Ggra4426.t1|Name=Ggra4426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=635bp
MVGSTEVSNTRPSYRVGTEQRIMFDVVPACVEKGVNVMQPVHVRNCPCFV
SFGLSTKKSSKAKVDFLVLAEEKFNQWRSSRYSGVPEYLPEFSAIGKRAN
EYNMVYDNLFFQTPNIELRRNESFVLAFRTTSDEDDCDLEIMHIFQSMPR
PCPPRLRLGRKDERNRASQEEHVSRIGSPYVERSKENRSHYLEEIDRLRR
GEAQVRTNALPHQSAYSPKYPLHIARNFAKDNLNRHETKRRTAAGKGGYS
KTDKYTATNNVVAGTEVDDLTIRLYMVSIRSSSGACSGTIIGSRWILTAA
HCQVREGGEALVGGNTNLNGASYRVNRFIPHPEYKLSQQGQVEANDIAVI
ETDPLKHGGAVLLNMNGKGPDSERFVRASGYGQIAEEWTSGTERMLLQVD
IPIVSFKRCIQAFVSYGAPEFARALQSRSHMCAGYADDDCAGDTCYGDSG
GPIVARAGGMYVQVGVVSGGIGCARKGLPGFYTRVGRYWDWIRNVTKGDV
DGSYVSGNDGADEVNVSELVDDDGSSDGTTALRTLGIIAGAVGLGVILVV
IAGLLLKRFGRMVVESTPEGKANEREDKSASLDNLLQFEKGPRNGEGVVG
GMKDESESAGDADGESEQGESEFQRPTYSRAKGG*

spliced messenger RNA

>Ggra4426.t1 ID=Ggra4426.t1|Name=Ggra4426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1905bp|location=Sequence derived from alignment at tig00000898_pilon:382888..384792+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGGCAGCACCGAAGTTTCCAATACGCGTCCATCCTACCGAGTTGG
GACGGAACAAAGAATAATGTTTGACGTCGTTCCGGCATGCGTAGAGAAGG
GAGTGAACGTTATGCAACCAGTGCACGTGCGAAACTGTCCTTGCTTTGTG
AGTTTCGGTTTGTCAACCAAAAAGTCATCGAAAGCAAAAGTGGACTTTCT
TGTACTGGCTGAAGAAAAATTCAATCAATGGCGCTCGTCGAGATACAGCG
GAGTTCCGGAGTACCTACCTGAGTTCTCGGCAATAGGAAAGCGAGCAAAC
GAGTACAACATGGTGTACGATAACTTATTCTTCCAAACTCCAAACATCGA
GTTGCGTAGGAATGAAAGCTTTGTGCTGGCGTTTCGAACCACGTCAGACG
AGGACGACTGCGATCTTGAGATTATGCATATATTCCAGAGTATGCCAAGG
CCATGCCCACCACGTTTACGCTTAGGAAGAAAGGACGAGCGGAACCGGGC
AAGCCAAGAGGAGCATGTGTCCAGAATTGGTTCGCCTTATGTTGAAAGAA
GTAAGGAGAACAGAAGCCATTATCTTGAGGAAATCGATCGATTGCGGCGT
GGAGAAGCGCAAGTACGAACCAATGCGTTGCCGCACCAATCAGCTTACTC
TCCAAAGTATCCATTGCACATTGCAAGGAATTTCGCGAAGGACAACTTGA
ACAGGCATGAAACAAAACGGCGGACCGCTGCAGGTAAAGGAGGATACAGC
AAAACAGACAAATATACAGCCACAAACAATGTGGTAGCAGGAACTGAGGT
GGACGATTTGACGATTCGTCTATACATGGTATCAATTCGTTCCTCATCCG
GAGCATGTTCCGGTACGATAATTGGATCGCGATGGATTTTGACGGCTGCC
CACTGCCAAGTACGAGAAGGAGGAGAAGCACTCGTCGGAGGAAACACAAA
CTTGAACGGCGCAAGTTACAGAGTGAATCGATTCATACCGCATCCCGAGT
ACAAACTTTCACAACAAGGGCAGGTAGAAGCAAATGATATTGCGGTAATA
GAAACGGATCCATTGAAACACGGAGGTGCAGTGTTACTTAATATGAACGG
AAAAGGGCCAGATTCAGAAAGATTTGTAAGGGCTAGTGGGTATGGCCAGA
TTGCAGAAGAATGGACTTCTGGCACGGAACGCATGTTGCTTCAAGTTGAT
ATCCCAATAGTCTCATTTAAGAGATGCATACAAGCTTTTGTTTCATACGG
AGCGCCGGAGTTTGCCCGTGCTCTACAAAGCAGAAGTCATATGTGTGCTG
GATATGCCGACGACGATTGTGCAGGGGATACATGCTACGGTGATTCTGGT
GGACCGATTGTGGCACGAGCAGGTGGAATGTATGTTCAAGTTGGAGTAGT
GAGCGGTGGTATCGGATGTGCTAGGAAGGGATTACCGGGATTCTACACTC
GGGTAGGACGCTATTGGGATTGGATTAGAAACGTAACGAAAGGAGACGTC
GATGGTTCTTATGTGTCTGGGAATGATGGAGCGGATGAAGTGAACGTATC
CGAACTAGTGGATGACGATGGGTCAAGTGATGGGACTACTGCGCTTAGAA
CGCTAGGTATCATCGCCGGTGCAGTCGGACTTGGGGTGATCCTAGTTGTT
ATAGCAGGTCTGCTTCTAAAAAGATTTGGAAGAATGGTCGTTGAATCAAC
ACCCGAAGGAAAAGCAAACGAGAGAGAAGACAAAAGCGCAAGCCTGGATA
ACCTTCTGCAATTCGAAAAGGGGCCTAGGAATGGTGAAGGTGTCGTTGGG
GGAATGAAGGATGAAAGTGAGAGCGCGGGTGACGCAGATGGTGAAAGCGA
ACAGGGAGAGTCGGAATTCCAAAGGCCAACGTACTCTAGAGCAAAAGGTG
GCTGA

protein sequence of Ggra4426.t1

>Ggra4426.t1 ID=Ggra4426.t1|Name=Ggra4426.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=635bp
MVGSTEVSNTRPSYRVGTEQRIMFDVVPACVEKGVNVMQPVHVRNCPCFV
SFGLSTKKSSKAKVDFLVLAEEKFNQWRSSRYSGVPEYLPEFSAIGKRAN
EYNMVYDNLFFQTPNIELRRNESFVLAFRTTSDEDDCDLEIMHIFQSMPR
PCPPRLRLGRKDERNRASQEEHVSRIGSPYVERSKENRSHYLEEIDRLRR
GEAQVRTNALPHQSAYSPKYPLHIARNFAKDNLNRHETKRRTAAGKGGYS
KTDKYTATNNVVAGTEVDDLTIRLYMVSIRSSSGACSGTIIGSRWILTAA
HCQVREGGEALVGGNTNLNGASYRVNRFIPHPEYKLSQQGQVEANDIAVI
ETDPLKHGGAVLLNMNGKGPDSERFVRASGYGQIAEEWTSGTERMLLQVD
IPIVSFKRCIQAFVSYGAPEFARALQSRSHMCAGYADDDCAGDTCYGDSG
GPIVARAGGMYVQVGVVSGGIGCARKGLPGFYTRVGRYWDWIRNVTKGDV
DGSYVSGNDGADEVNVSELVDDDGSSDGTTALRTLGIIAGAVGLGVILVV
IAGLLLKRFGRMVVESTPEGKANEREDKSASLDNLLQFEKGPRNGEGVVG
GMKDESESAGDADGESEQGESEFQRPTYSRAKGG*

mRNA from alignment at tig00000898_pilon:382888..384792+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4426.t1 ID=Ggra4426.t1|Name=Ggra4426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1905bp|location=Sequence derived from alignment at tig00000898_pilon:382888..384792+ (Gracilaria gracilis GNS1m male)
ATGGTTGGCAGCACCGAAGTTTCCAATACGCGTCCATCCTACCGAGTTGG
GACGGAACAAAGAATAATGTTTGACGTCGTTCCGGCATGCGTAGAGAAGG
GAGTGAACGTTATGCAACCAGTGCACGTGCGAAACTGTCCTTGCTTTGTG
AGTTTCGGTTTGTCAACCAAAAAGTCATCGAAAGCAAAAGTGGACTTTCT
TGTACTGGCTGAAGAAAAATTCAATCAATGGCGCTCGTCGAGATACAGCG
GAGTTCCGGAGTACCTACCTGAGTTCTCGGCAATAGGAAAGCGAGCAAAC
GAGTACAACATGGTGTACGATAACTTATTCTTCCAAACTCCAAACATCGA
GTTGCGTAGGAATGAAAGCTTTGTGCTGGCGTTTCGAACCACGTCAGACG
AGGACGACTGCGATCTTGAGATTATGCATATATTCCAGAGTATGCCAAGG
CCATGCCCACCACGTTTACGCTTAGGAAGAAAGGACGAGCGGAACCGGGC
AAGCCAAGAGGAGCATGTGTCCAGAATTGGTTCGCCTTATGTTGAAAGAA
GTAAGGAGAACAGAAGCCATTATCTTGAGGAAATCGATCGATTGCGGCGT
GGAGAAGCGCAAGTACGAACCAATGCGTTGCCGCACCAATCAGCTTACTC
TCCAAAGTATCCATTGCACATTGCAAGGAATTTCGCGAAGGACAACTTGA
ACAGGCATGAAACAAAACGGCGGACCGCTGCAGGTAAAGGAGGATACAGC
AAAACAGACAAATATACAGCCACAAACAATGTGGTAGCAGGAACTGAGGT
GGACGATTTGACGATTCGTCTATACATGGTATCAATTCGTTCCTCATCCG
GAGCATGTTCCGGTACGATAATTGGATCGCGATGGATTTTGACGGCTGCC
CACTGCCAAGTACGAGAAGGAGGAGAAGCACTCGTCGGAGGAAACACAAA
CTTGAACGGCGCAAGTTACAGAGTGAATCGATTCATACCGCATCCCGAGT
ACAAACTTTCACAACAAGGGCAGGTAGAAGCAAATGATATTGCGGTAATA
GAAACGGATCCATTGAAACACGGAGGTGCAGTGTTACTTAATATGAACGG
AAAAGGGCCAGATTCAGAAAGATTTGTAAGGGCTAGTGGGTATGGCCAGA
TTGCAGAAGAATGGACTTCTGGCACGGAACGCATGTTGCTTCAAGTTGAT
ATCCCAATAGTCTCATTTAAGAGATGCATACAAGCTTTTGTTTCATACGG
AGCGCCGGAGTTTGCCCGTGCTCTACAAAGCAGAAGTCATATGTGTGCTG
GATATGCCGACGACGATTGTGCAGGGGATACATGCTACGGTGATTCTGGT
GGACCGATTGTGGCACGAGCAGGTGGAATGTATGTTCAAGTTGGAGTAGT
GAGCGGTGGTATCGGATGTGCTAGGAAGGGATTACCGGGATTCTACACTC
GGGTAGGACGCTATTGGGATTGGATTAGAAACGTAACGAAAGGAGACGTC
GATGGTTCTTATGTGTCTGGGAATGATGGAGCGGATGAAGTGAACGTATC
CGAACTAGTGGATGACGATGGGTCAAGTGATGGGACTACTGCGCTTAGAA
CGCTAGGTATCATCGCCGGTGCAGTCGGACTTGGGGTGATCCTAGTTGTT
ATAGCAGGTCTGCTTCTAAAAAGATTTGGAAGAATGGTCGTTGAATCAAC
ACCCGAAGGAAAAGCAAACGAGAGAGAAGACAAAAGCGCAAGCCTGGATA
ACCTTCTGCAATTCGAAAAGGGGCCTAGGAATGGTGAAGGTGTCGTTGGG
GGAATGAAGGATGAAAGTGAGAGCGCGGGTGACGCAGATGGTGAAAGCGA
ACAGGGAGAGTCGGAATTCCAAAGGCCAACGTACTCTAGAGCAAAAGGTG
GCTGA

Coding sequence (CDS) from alignment at tig00000898_pilon:382888..384792+

>Ggra4426.t1 ID=Ggra4426.t1|Name=Ggra4426.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1905bp|location=Sequence derived from alignment at tig00000898_pilon:382888..384792+ (Gracilaria gracilis GNS1m male)
ATGGTTGGCAGCACCGAAGTTTCCAATACGCGTCCATCCTACCGAGTTGG
GACGGAACAAAGAATAATGTTTGACGTCGTTCCGGCATGCGTAGAGAAGG
GAGTGAACGTTATGCAACCAGTGCACGTGCGAAACTGTCCTTGCTTTGTG
AGTTTCGGTTTGTCAACCAAAAAGTCATCGAAAGCAAAAGTGGACTTTCT
TGTACTGGCTGAAGAAAAATTCAATCAATGGCGCTCGTCGAGATACAGCG
GAGTTCCGGAGTACCTACCTGAGTTCTCGGCAATAGGAAAGCGAGCAAAC
GAGTACAACATGGTGTACGATAACTTATTCTTCCAAACTCCAAACATCGA
GTTGCGTAGGAATGAAAGCTTTGTGCTGGCGTTTCGAACCACGTCAGACG
AGGACGACTGCGATCTTGAGATTATGCATATATTCCAGAGTATGCCAAGG
CCATGCCCACCACGTTTACGCTTAGGAAGAAAGGACGAGCGGAACCGGGC
AAGCCAAGAGGAGCATGTGTCCAGAATTGGTTCGCCTTATGTTGAAAGAA
GTAAGGAGAACAGAAGCCATTATCTTGAGGAAATCGATCGATTGCGGCGT
GGAGAAGCGCAAGTACGAACCAATGCGTTGCCGCACCAATCAGCTTACTC
TCCAAAGTATCCATTGCACATTGCAAGGAATTTCGCGAAGGACAACTTGA
ACAGGCATGAAACAAAACGGCGGACCGCTGCAGGTAAAGGAGGATACAGC
AAAACAGACAAATATACAGCCACAAACAATGTGGTAGCAGGAACTGAGGT
GGACGATTTGACGATTCGTCTATACATGGTATCAATTCGTTCCTCATCCG
GAGCATGTTCCGGTACGATAATTGGATCGCGATGGATTTTGACGGCTGCC
CACTGCCAAGTACGAGAAGGAGGAGAAGCACTCGTCGGAGGAAACACAAA
CTTGAACGGCGCAAGTTACAGAGTGAATCGATTCATACCGCATCCCGAGT
ACAAACTTTCACAACAAGGGCAGGTAGAAGCAAATGATATTGCGGTAATA
GAAACGGATCCATTGAAACACGGAGGTGCAGTGTTACTTAATATGAACGG
AAAAGGGCCAGATTCAGAAAGATTTGTAAGGGCTAGTGGGTATGGCCAGA
TTGCAGAAGAATGGACTTCTGGCACGGAACGCATGTTGCTTCAAGTTGAT
ATCCCAATAGTCTCATTTAAGAGATGCATACAAGCTTTTGTTTCATACGG
AGCGCCGGAGTTTGCCCGTGCTCTACAAAGCAGAAGTCATATGTGTGCTG
GATATGCCGACGACGATTGTGCAGGGGATACATGCTACGGTGATTCTGGT
GGACCGATTGTGGCACGAGCAGGTGGAATGTATGTTCAAGTTGGAGTAGT
GAGCGGTGGTATCGGATGTGCTAGGAAGGGATTACCGGGATTCTACACTC
GGGTAGGACGCTATTGGGATTGGATTAGAAACGTAACGAAAGGAGACGTC
GATGGTTCTTATGTGTCTGGGAATGATGGAGCGGATGAAGTGAACGTATC
CGAACTAGTGGATGACGATGGGTCAAGTGATGGGACTACTGCGCTTAGAA
CGCTAGGTATCATCGCCGGTGCAGTCGGACTTGGGGTGATCCTAGTTGTT
ATAGCAGGTCTGCTTCTAAAAAGATTTGGAAGAATGGTCGTTGAATCAAC
ACCCGAAGGAAAAGCAAACGAGAGAGAAGACAAAAGCGCAAGCCTGGATA
ACCTTCTGCAATTCGAAAAGGGGCCTAGGAATGGTGAAGGTGTCGTTGGG
GGAATGAAGGATGAAAGTGAGAGCGCGGGTGACGCAGATGGTGAAAGCGA
ACAGGGAGAGTCGGAATTCCAAAGGCCAACGTACTCTAGAGCAAAAGGTG
GCTGA