Ggra4423.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4423.t1
Unique Name	Ggra4423.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:375167..376102 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	43151.ADAC006415-PA
Preferred name	PLCXD2
PFAMs	PI-PLC-X
Max annot lvl	33208\|Metazoa
Evalue	1.84e-09
EggNOG OGs	KOG4306@1\|root,KOG4306@2759\|Eukaryota,39RCE@33154\|Opisthokonta,3BCHP@33208\|Metazoa,3CTA9@33213\|Bilateria,41YZV@6656\|Arthropoda,3SMBQ@50557\|Insecta,44ZYH@7147\|Diptera,45DVE@7148\|Nematocera
Description	phosphoric diester hydrolase activity. It is involved in the biological process described with
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4423	Ggra4423	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 375167..376102 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4423.t1.stop1	Ggra4423.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 375167..375169 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4423.t1.CDS1	Ggra4423.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 375167..376102 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4423.t1.exon1	Ggra4423.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 375167..376102 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4423.t1.start1	Ggra4423.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 376100..376102 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4423.t1	Ggra4423.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 375167..376102 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:375167..376102-
coding sequence from alignment at tig00000898_pilon:375167..376102-

mRNA sequence

>Ggra4423.t1 ID=Ggra4423.t1|Name=Ggra4423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp
MSTHSSASSSADSPTLYDVMLPGTHDSAAYVIRPDLSSRSTALPLRLRTI
RNFLSTVQADFALTQKLTVYQQLLAGARFLDIRVSKRPPVSGDCQFWTVH
GMVLCVPLIDILQQINSFHQHTASAHTVITVFRAQFLHPSEEMQLTHEVR
QNLHHQVFEGTASQLRHLPLCELPPNIVAGLCGMPLPLEWGRDVWIDTYS
CDTKITFLESVLQSYKSRYQRDDLFVLGWTVTPSVWDVTLRVLSFGYCRP
SVKSEAANMNARFDEFSNAYSFALQHRCNVIFFDCFSQKLGSMVNSLNSL
SQENSSYLWHS*

spliced messenger RNA

>Ggra4423.t1 ID=Ggra4423.t1|Name=Ggra4423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000898_pilon:375167..376102- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACCCATTCCTCGGCTTCGTCTTCCGCAGACTCGCCCACGCTCTA
CGACGTCATGTTGCCCGGCACCCATGATTCCGCCGCGTACGTCATTCGTC
CAGACCTGTCGTCACGCTCCACAGCCTTGCCTCTTCGCCTACGAACCATC
CGTAACTTTCTTTCTACCGTGCAGGCCGACTTCGCCCTTACACAGAAACT
CACAGTTTACCAACAGCTTCTGGCAGGAGCAAGATTCCTCGACATTCGAG
TCTCCAAGCGCCCGCCAGTATCGGGCGACTGCCAGTTTTGGACCGTGCAC
GGCATGGTCTTATGCGTTCCTCTAATAGATATTCTACAGCAGATTAACTC
CTTTCATCAACACACCGCCTCGGCACACACCGTTATCACAGTGTTTCGCG
CGCAGTTTTTGCACCCTTCTGAAGAGATGCAATTGACGCACGAAGTGCGT
CAAAATTTGCACCATCAGGTCTTTGAGGGTACTGCTTCGCAACTACGCCA
TTTGCCGTTGTGTGAACTACCCCCAAATATTGTCGCCGGTCTCTGTGGAA
TGCCATTGCCTTTAGAATGGGGGCGCGATGTCTGGATCGATACGTACTCC
TGCGACACAAAGATAACCTTCCTTGAATCTGTTTTGCAATCTTATAAATC
GCGTTATCAGCGCGATGATCTCTTTGTACTTGGCTGGACTGTAACTCCTT
CCGTATGGGACGTCACCCTGCGTGTTTTGTCGTTCGGCTATTGTAGACCT
TCTGTCAAGTCAGAAGCTGCAAACATGAACGCTCGTTTCGATGAATTTTC
AAACGCCTACTCCTTCGCGCTACAGCACCGTTGTAATGTCATTTTCTTTG
ATTGTTTTTCTCAGAAGCTAGGTTCAATGGTCAACTCACTCAACTCTCTG
TCGCAGGAGAATTCGTCGTATCTTTGGCACTCATGA

protein sequence of Ggra4423.t1

>Ggra4423.t1 ID=Ggra4423.t1|Name=Ggra4423.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MSTHSSASSSADSPTLYDVMLPGTHDSAAYVIRPDLSSRSTALPLRLRTI
RNFLSTVQADFALTQKLTVYQQLLAGARFLDIRVSKRPPVSGDCQFWTVH
GMVLCVPLIDILQQINSFHQHTASAHTVITVFRAQFLHPSEEMQLTHEVR
QNLHHQVFEGTASQLRHLPLCELPPNIVAGLCGMPLPLEWGRDVWIDTYS
CDTKITFLESVLQSYKSRYQRDDLFVLGWTVTPSVWDVTLRVLSFGYCRP
SVKSEAANMNARFDEFSNAYSFALQHRCNVIFFDCFSQKLGSMVNSLNSL
SQENSSYLWHS*

mRNA from alignment at tig00000898_pilon:375167..376102-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4423.t1 ID=Ggra4423.t1|Name=Ggra4423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000898_pilon:375167..376102- (Gracilaria gracilis GNS1m male)
ATGTCCACCCATTCCTCGGCTTCGTCTTCCGCAGACTCGCCCACGCTCTA
CGACGTCATGTTGCCCGGCACCCATGATTCCGCCGCGTACGTCATTCGTC
CAGACCTGTCGTCACGCTCCACAGCCTTGCCTCTTCGCCTACGAACCATC
CGTAACTTTCTTTCTACCGTGCAGGCCGACTTCGCCCTTACACAGAAACT
CACAGTTTACCAACAGCTTCTGGCAGGAGCAAGATTCCTCGACATTCGAG
TCTCCAAGCGCCCGCCAGTATCGGGCGACTGCCAGTTTTGGACCGTGCAC
GGCATGGTCTTATGCGTTCCTCTAATAGATATTCTACAGCAGATTAACTC
CTTTCATCAACACACCGCCTCGGCACACACCGTTATCACAGTGTTTCGCG
CGCAGTTTTTGCACCCTTCTGAAGAGATGCAATTGACGCACGAAGTGCGT
CAAAATTTGCACCATCAGGTCTTTGAGGGTACTGCTTCGCAACTACGCCA
TTTGCCGTTGTGTGAACTACCCCCAAATATTGTCGCCGGTCTCTGTGGAA
TGCCATTGCCTTTAGAATGGGGGCGCGATGTCTGGATCGATACGTACTCC
TGCGACACAAAGATAACCTTCCTTGAATCTGTTTTGCAATCTTATAAATC
GCGTTATCAGCGCGATGATCTCTTTGTACTTGGCTGGACTGTAACTCCTT
CCGTATGGGACGTCACCCTGCGTGTTTTGTCGTTCGGCTATTGTAGACCT
TCTGTCAAGTCAGAAGCTGCAAACATGAACGCTCGTTTCGATGAATTTTC
AAACGCCTACTCCTTCGCGCTACAGCACCGTTGTAATGTCATTTTCTTTG
ATTGTTTTTCTCAGAAGCTAGGTTCAATGGTCAACTCACTCAACTCTCTG
TCGCAGGAGAATTCGTCGTATCTTTGGCACTCATGA

Coding sequence (CDS) from alignment at tig00000898_pilon:375167..376102-

>Ggra4423.t1 ID=Ggra4423.t1|Name=Ggra4423.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000898_pilon:375167..376102- (Gracilaria gracilis GNS1m male)
ATGTCCACCCATTCCTCGGCTTCGTCTTCCGCAGACTCGCCCACGCTCTA
CGACGTCATGTTGCCCGGCACCCATGATTCCGCCGCGTACGTCATTCGTC
CAGACCTGTCGTCACGCTCCACAGCCTTGCCTCTTCGCCTACGAACCATC
CGTAACTTTCTTTCTACCGTGCAGGCCGACTTCGCCCTTACACAGAAACT
CACAGTTTACCAACAGCTTCTGGCAGGAGCAAGATTCCTCGACATTCGAG
TCTCCAAGCGCCCGCCAGTATCGGGCGACTGCCAGTTTTGGACCGTGCAC
GGCATGGTCTTATGCGTTCCTCTAATAGATATTCTACAGCAGATTAACTC
CTTTCATCAACACACCGCCTCGGCACACACCGTTATCACAGTGTTTCGCG
CGCAGTTTTTGCACCCTTCTGAAGAGATGCAATTGACGCACGAAGTGCGT
CAAAATTTGCACCATCAGGTCTTTGAGGGTACTGCTTCGCAACTACGCCA
TTTGCCGTTGTGTGAACTACCCCCAAATATTGTCGCCGGTCTCTGTGGAA
TGCCATTGCCTTTAGAATGGGGGCGCGATGTCTGGATCGATACGTACTCC
TGCGACACAAAGATAACCTTCCTTGAATCTGTTTTGCAATCTTATAAATC
GCGTTATCAGCGCGATGATCTCTTTGTACTTGGCTGGACTGTAACTCCTT
CCGTATGGGACGTCACCCTGCGTGTTTTGTCGTTCGGCTATTGTAGACCT
TCTGTCAAGTCAGAAGCTGCAAACATGAACGCTCGTTTCGATGAATTTTC
AAACGCCTACTCCTTCGCGCTACAGCACCGTTGTAATGTCATTTTCTTTG
ATTGTTTTTCTCAGAAGCTAGGTTCAATGGTCAACTCACTCAACTCTCTG
TCGCAGGAGAATTCGTCGTATCTTTGGCACTCATGA