Ggra4422.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4422.t2
Unique Name	Ggra4422.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	487

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:372958..374418 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7918.ENSLOCP00000003423
Preferred name	NAT10
PFAMs	DUF1726,GNAT_acetyltr_2,Helicase_RecD,tRNA_bind_2
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14521
KEGG Pathway	ko03008,map03008
GOs	GO:0000049,GO:0000154,GO:0002097,GO:0002101,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008080,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010556,GO:0010558,GO:0010605,GO:0010639,GO:0016043,GO:0016070,GO:0016072,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022613,GO:0030490,GO:0030496,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032991,GO:0033043,GO:0033044,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051391,GO:0051392,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1904356,GO:1904357,GO:1904812,GO:1990882,GO:1990883,GO:1990884,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
Evalue	2.09e-120
EggNOG OGs	COG1444@1\|root,KOG2036@2759\|Eukaryota,38FQJ@33154\|Opisthokonta,3B9XC@33208\|Metazoa,3CUWZ@33213\|Bilateria,484CZ@7711\|Chordata,493R5@7742\|Vertebrata,49XUA@7898\|Actinopterygii
Description	RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA-binding adapter protein THUMBD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation
COG category	S
BRITE	ko00000,ko00001,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4422	Ggra4422	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 371281..374418 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4422.t2.start1	Ggra4422.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 372958..372960 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4422.t2.CDS1	Ggra4422.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 372958..374418 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4422.t2.exon1	Ggra4422.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 372958..374418 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4422.t2.stop1	Ggra4422.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 374416..374418 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4422.t2	Ggra4422.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 372958..374418 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:372958..374418+
coding sequence from alignment at tig00000898_pilon:372958..374418+

mRNA sequence

>Ggra4422.t2 ID=Ggra4422.t2|Name=Ggra4422.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=487bp
MLSDAPAHALFVLLAPTRSDTEKLPDVLCAIQVCLEGRISQKSSKSNLSR
GYRAAGDLIPWTISQQYQEPDFATLSGARIVRVATHPDVQRMGYGTRAIQ
LLIDYYSGSHVSLEEDDSVKQGEGNGEDHSKKKTKDGNLLNEIIGPRKHI
PPLLLRLSERPSERLDYLGVSFGLTHPLYNFWSNLGFLPLYIRSTTNDLT
GEHTCVMTTTKVSASDLDSAHWLPTFHQDFRRRFVYLLGYDFRNMPGGLA
MTILNVGHGFWEAREDQRAAKTVSEIKSLFTPYDRRRLESYSRNLVDHHI
VMDMVPRLAEMYVMGGFGSNDSFRLSAAQCAILVALGLQRKSVDQLEEEL
SIQSSQILALFNKVMRKMSTYIRQSEETLIAQGIGPDNAEKVAASILPKA
AIRKSVDEELEEHTVHKTKTEGIPKTMERYKIEGSDAEWEKVFKKDSSGD
PGVVSIKTKKRKGASEEDMLKSLSGNGSTKKKKRRH*

spliced messenger RNA

>Ggra4422.t2 ID=Ggra4422.t2|Name=Ggra4422.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000898_pilon:372958..374418+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCTGATGCACCAGCACATGCTCTTTTTGTACTTCTCGCGCCAAC
GAGATCGGACACAGAGAAGCTTCCGGATGTTCTGTGTGCAATTCAGGTTT
GCCTCGAAGGTCGGATTTCACAGAAAAGTTCGAAGAGTAATCTCTCTCGA
GGCTATCGAGCTGCTGGTGATCTCATTCCGTGGACGATAAGCCAACAGTA
TCAAGAGCCTGATTTTGCTACGCTATCAGGCGCTCGTATTGTCAGAGTTG
CGACCCATCCCGATGTCCAGAGAATGGGGTACGGAACCCGAGCAATACAA
CTCTTGATAGATTACTATTCTGGCAGTCATGTATCTCTGGAAGAAGACGA
CAGTGTGAAACAAGGTGAGGGCAACGGGGAAGACCACAGCAAAAAGAAAA
CTAAGGATGGAAACCTTCTGAATGAAATAATCGGCCCACGAAAACACATA
CCTCCTCTGCTGCTCCGACTAAGCGAAAGGCCCTCTGAGAGACTTGACTA
CTTGGGAGTATCATTCGGCCTCACTCATCCACTTTATAATTTTTGGAGCA
ATCTTGGCTTTCTCCCATTGTACATAAGATCAACTACGAACGACTTAACT
GGGGAACACACCTGTGTTATGACGACGACTAAGGTGTCTGCAAGTGATTT
AGATTCAGCGCACTGGCTTCCAACTTTTCATCAGGACTTTCGGCGGCGAT
TCGTATACTTGCTTGGGTACGACTTTAGAAACATGCCTGGTGGACTAGCC
ATGACGATCCTGAACGTCGGACATGGGTTCTGGGAGGCTCGCGAAGATCA
ACGAGCGGCAAAGACGGTTTCTGAAATCAAATCTCTCTTCACTCCATATG
ACAGGCGTAGACTAGAATCATATTCAAGAAATTTGGTTGATCACCACATC
GTTATGGATATGGTCCCACGTTTGGCTGAGATGTATGTAATGGGTGGTTT
TGGATCTAACGATTCTTTTAGACTGTCTGCCGCACAGTGTGCAATACTGG
TTGCTTTAGGTTTACAACGAAAGTCAGTTGATCAACTCGAAGAAGAACTG
AGTATCCAAAGTTCCCAGATCTTGGCCTTGTTCAATAAGGTCATGCGGAA
GATGTCAACGTACATCAGGCAATCGGAAGAAACTCTGATTGCCCAAGGAA
TTGGGCCTGATAATGCTGAAAAGGTCGCCGCTAGTATTCTACCGAAGGCG
GCGATAAGGAAAAGTGTAGATGAGGAGCTGGAGGAGCACACAGTTCACAA
GACGAAAACCGAAGGTATCCCAAAGACCATGGAGAGGTACAAGATTGAGG
GAAGTGATGCGGAATGGGAAAAAGTGTTCAAGAAAGACAGCTCCGGAGAC
CCTGGTGTAGTGAGCATTAAGACTAAGAAGAGAAAAGGAGCGTCAGAGGA
AGACATGCTGAAGTCTCTTTCGGGCAACGGCTCAACCAAGAAGAAAAAGC
GACGACATTGA

protein sequence of Ggra4422.t2

>Ggra4422.t2 ID=Ggra4422.t2|Name=Ggra4422.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=487bp
MLSDAPAHALFVLLAPTRSDTEKLPDVLCAIQVCLEGRISQKSSKSNLSR
GYRAAGDLIPWTISQQYQEPDFATLSGARIVRVATHPDVQRMGYGTRAIQ
LLIDYYSGSHVSLEEDDSVKQGEGNGEDHSKKKTKDGNLLNEIIGPRKHI
PPLLLRLSERPSERLDYLGVSFGLTHPLYNFWSNLGFLPLYIRSTTNDLT
GEHTCVMTTTKVSASDLDSAHWLPTFHQDFRRRFVYLLGYDFRNMPGGLA
MTILNVGHGFWEAREDQRAAKTVSEIKSLFTPYDRRRLESYSRNLVDHHI
VMDMVPRLAEMYVMGGFGSNDSFRLSAAQCAILVALGLQRKSVDQLEEEL
SIQSSQILALFNKVMRKMSTYIRQSEETLIAQGIGPDNAEKVAASILPKA
AIRKSVDEELEEHTVHKTKTEGIPKTMERYKIEGSDAEWEKVFKKDSSGD
PGVVSIKTKKRKGASEEDMLKSLSGNGSTKKKKRRH*

mRNA from alignment at tig00000898_pilon:372958..374418+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4422.t2 ID=Ggra4422.t2|Name=Ggra4422.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000898_pilon:372958..374418+ (Gracilaria gracilis GNS1m male)
ATGCTTTCTGATGCACCAGCACATGCTCTTTTTGTACTTCTCGCGCCAAC
GAGATCGGACACAGAGAAGCTTCCGGATGTTCTGTGTGCAATTCAGGTTT
GCCTCGAAGGTCGGATTTCACAGAAAAGTTCGAAGAGTAATCTCTCTCGA
GGCTATCGAGCTGCTGGTGATCTCATTCCGTGGACGATAAGCCAACAGTA
TCAAGAGCCTGATTTTGCTACGCTATCAGGCGCTCGTATTGTCAGAGTTG
CGACCCATCCCGATGTCCAGAGAATGGGGTACGGAACCCGAGCAATACAA
CTCTTGATAGATTACTATTCTGGCAGTCATGTATCTCTGGAAGAAGACGA
CAGTGTGAAACAAGGTGAGGGCAACGGGGAAGACCACAGCAAAAAGAAAA
CTAAGGATGGAAACCTTCTGAATGAAATAATCGGCCCACGAAAACACATA
CCTCCTCTGCTGCTCCGACTAAGCGAAAGGCCCTCTGAGAGACTTGACTA
CTTGGGAGTATCATTCGGCCTCACTCATCCACTTTATAATTTTTGGAGCA
ATCTTGGCTTTCTCCCATTGTACATAAGATCAACTACGAACGACTTAACT
GGGGAACACACCTGTGTTATGACGACGACTAAGGTGTCTGCAAGTGATTT
AGATTCAGCGCACTGGCTTCCAACTTTTCATCAGGACTTTCGGCGGCGAT
TCGTATACTTGCTTGGGTACGACTTTAGAAACATGCCTGGTGGACTAGCC
ATGACGATCCTGAACGTCGGACATGGGTTCTGGGAGGCTCGCGAAGATCA
ACGAGCGGCAAAGACGGTTTCTGAAATCAAATCTCTCTTCACTCCATATG
ACAGGCGTAGACTAGAATCATATTCAAGAAATTTGGTTGATCACCACATC
GTTATGGATATGGTCCCACGTTTGGCTGAGATGTATGTAATGGGTGGTTT
TGGATCTAACGATTCTTTTAGACTGTCTGCCGCACAGTGTGCAATACTGG
TTGCTTTAGGTTTACAACGAAAGTCAGTTGATCAACTCGAAGAAGAACTG
AGTATCCAAAGTTCCCAGATCTTGGCCTTGTTCAATAAGGTCATGCGGAA
GATGTCAACGTACATCAGGCAATCGGAAGAAACTCTGATTGCCCAAGGAA
TTGGGCCTGATAATGCTGAAAAGGTCGCCGCTAGTATTCTACCGAAGGCG
GCGATAAGGAAAAGTGTAGATGAGGAGCTGGAGGAGCACACAGTTCACAA
GACGAAAACCGAAGGTATCCCAAAGACCATGGAGAGGTACAAGATTGAGG
GAAGTGATGCGGAATGGGAAAAAGTGTTCAAGAAAGACAGCTCCGGAGAC
CCTGGTGTAGTGAGCATTAAGACTAAGAAGAGAAAAGGAGCGTCAGAGGA
AGACATGCTGAAGTCTCTTTCGGGCAACGGCTCAACCAAGAAGAAAAAGC
GACGACATTGA

Coding sequence (CDS) from alignment at tig00000898_pilon:372958..374418+

>Ggra4422.t2 ID=Ggra4422.t2|Name=Ggra4422.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00000898_pilon:372958..374418+ (Gracilaria gracilis GNS1m male)
ATGCTTTCTGATGCACCAGCACATGCTCTTTTTGTACTTCTCGCGCCAAC
GAGATCGGACACAGAGAAGCTTCCGGATGTTCTGTGTGCAATTCAGGTTT
GCCTCGAAGGTCGGATTTCACAGAAAAGTTCGAAGAGTAATCTCTCTCGA
GGCTATCGAGCTGCTGGTGATCTCATTCCGTGGACGATAAGCCAACAGTA
TCAAGAGCCTGATTTTGCTACGCTATCAGGCGCTCGTATTGTCAGAGTTG
CGACCCATCCCGATGTCCAGAGAATGGGGTACGGAACCCGAGCAATACAA
CTCTTGATAGATTACTATTCTGGCAGTCATGTATCTCTGGAAGAAGACGA
CAGTGTGAAACAAGGTGAGGGCAACGGGGAAGACCACAGCAAAAAGAAAA
CTAAGGATGGAAACCTTCTGAATGAAATAATCGGCCCACGAAAACACATA
CCTCCTCTGCTGCTCCGACTAAGCGAAAGGCCCTCTGAGAGACTTGACTA
CTTGGGAGTATCATTCGGCCTCACTCATCCACTTTATAATTTTTGGAGCA
ATCTTGGCTTTCTCCCATTGTACATAAGATCAACTACGAACGACTTAACT
GGGGAACACACCTGTGTTATGACGACGACTAAGGTGTCTGCAAGTGATTT
AGATTCAGCGCACTGGCTTCCAACTTTTCATCAGGACTTTCGGCGGCGAT
TCGTATACTTGCTTGGGTACGACTTTAGAAACATGCCTGGTGGACTAGCC
ATGACGATCCTGAACGTCGGACATGGGTTCTGGGAGGCTCGCGAAGATCA
ACGAGCGGCAAAGACGGTTTCTGAAATCAAATCTCTCTTCACTCCATATG
ACAGGCGTAGACTAGAATCATATTCAAGAAATTTGGTTGATCACCACATC
GTTATGGATATGGTCCCACGTTTGGCTGAGATGTATGTAATGGGTGGTTT
TGGATCTAACGATTCTTTTAGACTGTCTGCCGCACAGTGTGCAATACTGG
TTGCTTTAGGTTTACAACGAAAGTCAGTTGATCAACTCGAAGAAGAACTG
AGTATCCAAAGTTCCCAGATCTTGGCCTTGTTCAATAAGGTCATGCGGAA
GATGTCAACGTACATCAGGCAATCGGAAGAAACTCTGATTGCCCAAGGAA
TTGGGCCTGATAATGCTGAAAAGGTCGCCGCTAGTATTCTACCGAAGGCG
GCGATAAGGAAAAGTGTAGATGAGGAGCTGGAGGAGCACACAGTTCACAA
GACGAAAACCGAAGGTATCCCAAAGACCATGGAGAGGTACAAGATTGAGG
GAAGTGATGCGGAATGGGAAAAAGTGTTCAAGAAAGACAGCTCCGGAGAC
CCTGGTGTAGTGAGCATTAAGACTAAGAAGAGAAAAGGAGCGTCAGAGGA
AGACATGCTGAAGTCTCTTTCGGGCAACGGCTCAACCAAGAAGAAAAAGC
GACGACATTGA