Ggra4420.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4420.t1
Unique NameGgra4420.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:367350..368363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59689.Al_scaffold_0003_2289
PFAMsTauD
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Evalue1.91e-77
EggNOG OGs28JFJ@1|root,2QRUR@2759|Eukaryota,37IIG@33090|Viridiplantae,3GFW6@35493|Streptophyta,3HP3V@3699|Brassicales
DescriptionClavaminate synthase-like protein At3g21360
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4420Ggra4420Gracilaria gracilis GNS1m malegenetig00000898_pilon 367350..368363 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4420.t1.stop1Ggra4420.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 367350..367352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4420.t1.CDS1Ggra4420.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 367350..368363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4420.t1.exon1Ggra4420.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 367350..368363 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4420.t1.start1Ggra4420.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 368361..368363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4420.t1Ggra4420.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 367350..368363 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4420.t1 ID=Ggra4420.t1|Name=Ggra4420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=338bp
MKDTTPVFDHLSLPEARIYDGKPFPLMITPPSSLPELRTSPEAVIDYLKQ
NRDHVLHLLQSHAVLHFRDFAAHSSTPETFAKIVEESLGLPNFPYELGNA
VRTAIVGDRVFTANESPPEKPIPFHHELAQTPKYPAKLLFYCDRPADTGG
ETPVLLSRAVYQDLQKEHPEFLKKLEQHGVKYSRVMTPHDRPHSAIGRGW
RGTFRVQTRLEAEEVLSNRGYSFEWLEEGEDSPLLETSPTLQAVIETENG
KSFFNQIAAVWGGWRDEFNKPADCIRAGDGSVLDPKSLDSLVGVMNRHRV
AVPWRRGDFTIIDNMQAQHSRATFTGRRKVLASLASA*
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spliced messenger RNA

>Ggra4420.t1 ID=Ggra4420.t1|Name=Ggra4420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000898_pilon:367350..368363- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGATACGACACCTGTCTTCGACCACTTGAGTCTTCCTGAAGCCAG
AATCTATGACGGTAAACCATTTCCTCTCATGATCACACCGCCCTCTTCCT
TGCCAGAGTTACGGACATCACCCGAAGCTGTAATAGATTACCTCAAGCAG
AATCGCGACCATGTGCTACATCTTCTTCAGAGCCATGCTGTTCTTCACTT
CCGCGATTTCGCCGCACACAGTTCCACACCAGAGACGTTTGCCAAGATAG
TTGAAGAGAGTTTGGGCTTACCCAACTTTCCTTATGAGCTTGGGAATGCC
GTTCGAACAGCGATAGTTGGAGACCGAGTATTCACAGCAAACGAATCTCC
GCCAGAGAAACCAATCCCTTTTCATCACGAACTCGCTCAAACCCCCAAGT
ACCCTGCGAAGTTGTTGTTCTACTGTGATCGCCCAGCAGACACGGGTGGT
GAAACACCTGTGTTACTCTCAAGAGCTGTATACCAGGATCTACAGAAGGA
GCACCCGGAATTCCTCAAGAAGCTGGAACAGCATGGCGTTAAGTACTCCC
GTGTCATGACTCCTCATGATAGACCGCATTCAGCCATTGGGCGTGGGTGG
CGGGGTACGTTCCGTGTTCAGACTCGTCTCGAAGCAGAAGAAGTTCTTTC
GAACCGAGGATACAGCTTTGAATGGCTTGAAGAGGGGGAGGATAGCCCTT
TGCTAGAAACAAGTCCAACTTTGCAAGCAGTTATTGAAACTGAAAACGGA
AAATCTTTCTTCAACCAGATTGCCGCAGTGTGGGGCGGTTGGAGAGATGA
GTTCAACAAGCCTGCAGACTGTATTAGGGCTGGGGATGGGTCAGTTCTTG
ATCCGAAGTCGTTAGATTCACTGGTAGGCGTAATGAACAGACATCGGGTG
GCAGTCCCGTGGAGAAGAGGGGACTTCACGATCATTGACAACATGCAAGC
ACAGCACAGCCGAGCCACTTTCACAGGTAGGCGCAAAGTTCTGGCGTCTC
TAGCATCGGCCTAA
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protein sequence of Ggra4420.t1

>Ggra4420.t1 ID=Ggra4420.t1|Name=Ggra4420.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=338bp
MKDTTPVFDHLSLPEARIYDGKPFPLMITPPSSLPELRTSPEAVIDYLKQ
NRDHVLHLLQSHAVLHFRDFAAHSSTPETFAKIVEESLGLPNFPYELGNA
VRTAIVGDRVFTANESPPEKPIPFHHELAQTPKYPAKLLFYCDRPADTGG
ETPVLLSRAVYQDLQKEHPEFLKKLEQHGVKYSRVMTPHDRPHSAIGRGW
RGTFRVQTRLEAEEVLSNRGYSFEWLEEGEDSPLLETSPTLQAVIETENG
KSFFNQIAAVWGGWRDEFNKPADCIRAGDGSVLDPKSLDSLVGVMNRHRV
AVPWRRGDFTIIDNMQAQHSRATFTGRRKVLASLASA*
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mRNA from alignment at tig00000898_pilon:367350..368363-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4420.t1 ID=Ggra4420.t1|Name=Ggra4420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000898_pilon:367350..368363- (Gracilaria gracilis GNS1m male)
ATGAAAGATACGACACCTGTCTTCGACCACTTGAGTCTTCCTGAAGCCAG
AATCTATGACGGTAAACCATTTCCTCTCATGATCACACCGCCCTCTTCCT
TGCCAGAGTTACGGACATCACCCGAAGCTGTAATAGATTACCTCAAGCAG
AATCGCGACCATGTGCTACATCTTCTTCAGAGCCATGCTGTTCTTCACTT
CCGCGATTTCGCCGCACACAGTTCCACACCAGAGACGTTTGCCAAGATAG
TTGAAGAGAGTTTGGGCTTACCCAACTTTCCTTATGAGCTTGGGAATGCC
GTTCGAACAGCGATAGTTGGAGACCGAGTATTCACAGCAAACGAATCTCC
GCCAGAGAAACCAATCCCTTTTCATCACGAACTCGCTCAAACCCCCAAGT
ACCCTGCGAAGTTGTTGTTCTACTGTGATCGCCCAGCAGACACGGGTGGT
GAAACACCTGTGTTACTCTCAAGAGCTGTATACCAGGATCTACAGAAGGA
GCACCCGGAATTCCTCAAGAAGCTGGAACAGCATGGCGTTAAGTACTCCC
GTGTCATGACTCCTCATGATAGACCGCATTCAGCCATTGGGCGTGGGTGG
CGGGGTACGTTCCGTGTTCAGACTCGTCTCGAAGCAGAAGAAGTTCTTTC
GAACCGAGGATACAGCTTTGAATGGCTTGAAGAGGGGGAGGATAGCCCTT
TGCTAGAAACAAGTCCAACTTTGCAAGCAGTTATTGAAACTGAAAACGGA
AAATCTTTCTTCAACCAGATTGCCGCAGTGTGGGGCGGTTGGAGAGATGA
GTTCAACAAGCCTGCAGACTGTATTAGGGCTGGGGATGGGTCAGTTCTTG
ATCCGAAGTCGTTAGATTCACTGGTAGGCGTAATGAACAGACATCGGGTG
GCAGTCCCGTGGAGAAGAGGGGACTTCACGATCATTGACAACATGCAAGC
ACAGCACAGCCGAGCCACTTTCACAGGTAGGCGCAAAGTTCTGGCGTCTC
TAGCATCGGCCTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:367350..368363-

>Ggra4420.t1 ID=Ggra4420.t1|Name=Ggra4420.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00000898_pilon:367350..368363- (Gracilaria gracilis GNS1m male)
ATGAAAGATACGACACCTGTCTTCGACCACTTGAGTCTTCCTGAAGCCAG
AATCTATGACGGTAAACCATTTCCTCTCATGATCACACCGCCCTCTTCCT
TGCCAGAGTTACGGACATCACCCGAAGCTGTAATAGATTACCTCAAGCAG
AATCGCGACCATGTGCTACATCTTCTTCAGAGCCATGCTGTTCTTCACTT
CCGCGATTTCGCCGCACACAGTTCCACACCAGAGACGTTTGCCAAGATAG
TTGAAGAGAGTTTGGGCTTACCCAACTTTCCTTATGAGCTTGGGAATGCC
GTTCGAACAGCGATAGTTGGAGACCGAGTATTCACAGCAAACGAATCTCC
GCCAGAGAAACCAATCCCTTTTCATCACGAACTCGCTCAAACCCCCAAGT
ACCCTGCGAAGTTGTTGTTCTACTGTGATCGCCCAGCAGACACGGGTGGT
GAAACACCTGTGTTACTCTCAAGAGCTGTATACCAGGATCTACAGAAGGA
GCACCCGGAATTCCTCAAGAAGCTGGAACAGCATGGCGTTAAGTACTCCC
GTGTCATGACTCCTCATGATAGACCGCATTCAGCCATTGGGCGTGGGTGG
CGGGGTACGTTCCGTGTTCAGACTCGTCTCGAAGCAGAAGAAGTTCTTTC
GAACCGAGGATACAGCTTTGAATGGCTTGAAGAGGGGGAGGATAGCCCTT
TGCTAGAAACAAGTCCAACTTTGCAAGCAGTTATTGAAACTGAAAACGGA
AAATCTTTCTTCAACCAGATTGCCGCAGTGTGGGGCGGTTGGAGAGATGA
GTTCAACAAGCCTGCAGACTGTATTAGGGCTGGGGATGGGTCAGTTCTTG
ATCCGAAGTCGTTAGATTCACTGGTAGGCGTAATGAACAGACATCGGGTG
GCAGTCCCGTGGAGAAGAGGGGACTTCACGATCATTGACAACATGCAAGC
ACAGCACAGCCGAGCCACTTTCACAGGTAGGCGCAAAGTTCTGGCGTCTC
TAGCATCGGCCTAA
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