Ggra4419.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4419.t1
Unique NameGgra4419.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:360916..362232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706060.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue1.86e-42
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4419Ggra4419Gracilaria gracilis GNS1m malegenetig00000898_pilon 360916..362232 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4419.t1.start1Ggra4419.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 360916..360918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4419.t1.CDS1Ggra4419.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 360916..362232 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4419.t1.exon1Ggra4419.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 360916..362232 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4419.t1.stop1Ggra4419.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 362230..362232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4419.t1Ggra4419.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 360916..362232 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4419.t1 ID=Ggra4419.t1|Name=Ggra4419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=439bp
MSLKPVHDLTVFCFRRRRSLFSLAAVSLLLLLCTTYEVTLRNKLLAYVLR
STIDNPALVPKRGAKLALFIQVYERTIPLLPSLLERIWHPQNIYAIHVDK
RAPPELMQPIYRMLDNANYSSNVHLIPRQYVTYLGITTVLNTLNAISFLL
DQDKEWDYFINLSGADYPLVTPDQLRDILGDPAVVHRKLSFLQTTNYSNA
ATGSVYSDRFYRLPVDSATFSVIRPHDPYDQGVQADPCIQGCLKTPGKVA
HPLFESEYPAHIVKSEAWVILHRSAAEFALNSGLSRQLIAVFANVHCPEE
FFFSTLLTRAEETRDSIVHDAFRLVLWGMFDRGSRPPAIDSGDIPDIEKI
ISKKGGLFVRKRMKVDSDVRSYIDDYLLGVAEVAQKNDTIRESSKMFSRK
QRIRVLCASRHHVGHIFSSTTYAQYTKCLKASMKREDS*
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spliced messenger RNA

>Ggra4419.t1 ID=Ggra4419.t1|Name=Ggra4419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000898_pilon:360916..362232+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACTCAAGCCTGTTCACGATTTGACAGTGTTTTGCTTCCGACGACG
TCGTTCGCTGTTTAGCTTGGCCGCCGTTTCCCTGCTCCTCTTATTGTGCA
CCACTTACGAAGTAACGCTGAGGAACAAGCTGCTGGCATACGTTCTTCGC
TCTACTATCGACAATCCCGCTTTGGTTCCAAAACGAGGGGCAAAGCTTGC
TCTGTTCATTCAAGTCTACGAGCGCACAATACCGCTGCTGCCTTCGCTGC
TGGAAAGAATATGGCATCCACAGAACATCTATGCCATTCACGTCGACAAA
CGCGCTCCTCCAGAGCTTATGCAACCGATATATCGCATGCTGGACAATGC
GAATTATTCTTCAAACGTTCATCTCATCCCCCGTCAGTACGTCACTTATC
TTGGTATAACAACTGTGCTTAACACCCTTAACGCCATTTCGTTCTTACTC
GACCAAGACAAGGAATGGGACTACTTCATCAACCTCAGCGGTGCCGATTA
CCCTCTTGTCACACCAGACCAATTACGTGACATTCTCGGCGACCCAGCAG
TTGTGCACCGGAAGTTGAGCTTTTTACAGACCACCAACTACTCAAACGCA
GCCACCGGCTCAGTTTACAGCGATCGGTTCTACCGTCTTCCCGTAGATTC
TGCTACCTTTAGCGTCATAAGGCCTCATGACCCATATGATCAGGGAGTGC
AGGCAGATCCGTGCATACAAGGCTGTCTCAAGACCCCCGGCAAAGTGGCC
CACCCTCTTTTTGAAAGCGAATACCCTGCCCATATCGTCAAGTCCGAAGC
ATGGGTTATATTGCATCGTTCCGCTGCGGAATTTGCGCTTAATTCGGGTC
TTTCTCGTCAACTGATTGCAGTTTTTGCAAACGTGCACTGTCCGGAAGAG
TTCTTCTTCAGTACATTGCTAACGCGTGCTGAGGAAACGCGAGATTCGAT
TGTTCATGATGCTTTCCGATTGGTTCTGTGGGGCATGTTCGACAGAGGCA
GTCGCCCTCCGGCAATTGATTCTGGGGATATTCCTGACATCGAGAAGATC
ATATCTAAGAAAGGAGGTTTGTTTGTTCGAAAACGTATGAAAGTTGATTC
TGACGTGCGTTCATATATCGATGATTATCTATTAGGAGTGGCTGAGGTCG
CGCAGAAAAATGACACCATACGAGAATCGTCCAAAATGTTTTCTCGAAAG
CAACGTATCCGTGTTCTGTGTGCTTCCCGCCATCATGTTGGTCATATTTT
CTCATCCACAACTTACGCGCAATACACGAAATGCTTGAAAGCATCGATGA
AAAGAGAAGACTCTTGA
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protein sequence of Ggra4419.t1

>Ggra4419.t1 ID=Ggra4419.t1|Name=Ggra4419.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=439bp
MSLKPVHDLTVFCFRRRRSLFSLAAVSLLLLLCTTYEVTLRNKLLAYVLR
STIDNPALVPKRGAKLALFIQVYERTIPLLPSLLERIWHPQNIYAIHVDK
RAPPELMQPIYRMLDNANYSSNVHLIPRQYVTYLGITTVLNTLNAISFLL
DQDKEWDYFINLSGADYPLVTPDQLRDILGDPAVVHRKLSFLQTTNYSNA
ATGSVYSDRFYRLPVDSATFSVIRPHDPYDQGVQADPCIQGCLKTPGKVA
HPLFESEYPAHIVKSEAWVILHRSAAEFALNSGLSRQLIAVFANVHCPEE
FFFSTLLTRAEETRDSIVHDAFRLVLWGMFDRGSRPPAIDSGDIPDIEKI
ISKKGGLFVRKRMKVDSDVRSYIDDYLLGVAEVAQKNDTIRESSKMFSRK
QRIRVLCASRHHVGHIFSSTTYAQYTKCLKASMKREDS*
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mRNA from alignment at tig00000898_pilon:360916..362232+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4419.t1 ID=Ggra4419.t1|Name=Ggra4419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000898_pilon:360916..362232+ (Gracilaria gracilis GNS1m male)
ATGTCACTCAAGCCTGTTCACGATTTGACAGTGTTTTGCTTCCGACGACG
TCGTTCGCTGTTTAGCTTGGCCGCCGTTTCCCTGCTCCTCTTATTGTGCA
CCACTTACGAAGTAACGCTGAGGAACAAGCTGCTGGCATACGTTCTTCGC
TCTACTATCGACAATCCCGCTTTGGTTCCAAAACGAGGGGCAAAGCTTGC
TCTGTTCATTCAAGTCTACGAGCGCACAATACCGCTGCTGCCTTCGCTGC
TGGAAAGAATATGGCATCCACAGAACATCTATGCCATTCACGTCGACAAA
CGCGCTCCTCCAGAGCTTATGCAACCGATATATCGCATGCTGGACAATGC
GAATTATTCTTCAAACGTTCATCTCATCCCCCGTCAGTACGTCACTTATC
TTGGTATAACAACTGTGCTTAACACCCTTAACGCCATTTCGTTCTTACTC
GACCAAGACAAGGAATGGGACTACTTCATCAACCTCAGCGGTGCCGATTA
CCCTCTTGTCACACCAGACCAATTACGTGACATTCTCGGCGACCCAGCAG
TTGTGCACCGGAAGTTGAGCTTTTTACAGACCACCAACTACTCAAACGCA
GCCACCGGCTCAGTTTACAGCGATCGGTTCTACCGTCTTCCCGTAGATTC
TGCTACCTTTAGCGTCATAAGGCCTCATGACCCATATGATCAGGGAGTGC
AGGCAGATCCGTGCATACAAGGCTGTCTCAAGACCCCCGGCAAAGTGGCC
CACCCTCTTTTTGAAAGCGAATACCCTGCCCATATCGTCAAGTCCGAAGC
ATGGGTTATATTGCATCGTTCCGCTGCGGAATTTGCGCTTAATTCGGGTC
TTTCTCGTCAACTGATTGCAGTTTTTGCAAACGTGCACTGTCCGGAAGAG
TTCTTCTTCAGTACATTGCTAACGCGTGCTGAGGAAACGCGAGATTCGAT
TGTTCATGATGCTTTCCGATTGGTTCTGTGGGGCATGTTCGACAGAGGCA
GTCGCCCTCCGGCAATTGATTCTGGGGATATTCCTGACATCGAGAAGATC
ATATCTAAGAAAGGAGGTTTGTTTGTTCGAAAACGTATGAAAGTTGATTC
TGACGTGCGTTCATATATCGATGATTATCTATTAGGAGTGGCTGAGGTCG
CGCAGAAAAATGACACCATACGAGAATCGTCCAAAATGTTTTCTCGAAAG
CAACGTATCCGTGTTCTGTGTGCTTCCCGCCATCATGTTGGTCATATTTT
CTCATCCACAACTTACGCGCAATACACGAAATGCTTGAAAGCATCGATGA
AAAGAGAAGACTCTTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:360916..362232+

>Ggra4419.t1 ID=Ggra4419.t1|Name=Ggra4419.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000898_pilon:360916..362232+ (Gracilaria gracilis GNS1m male)
ATGTCACTCAAGCCTGTTCACGATTTGACAGTGTTTTGCTTCCGACGACG
TCGTTCGCTGTTTAGCTTGGCCGCCGTTTCCCTGCTCCTCTTATTGTGCA
CCACTTACGAAGTAACGCTGAGGAACAAGCTGCTGGCATACGTTCTTCGC
TCTACTATCGACAATCCCGCTTTGGTTCCAAAACGAGGGGCAAAGCTTGC
TCTGTTCATTCAAGTCTACGAGCGCACAATACCGCTGCTGCCTTCGCTGC
TGGAAAGAATATGGCATCCACAGAACATCTATGCCATTCACGTCGACAAA
CGCGCTCCTCCAGAGCTTATGCAACCGATATATCGCATGCTGGACAATGC
GAATTATTCTTCAAACGTTCATCTCATCCCCCGTCAGTACGTCACTTATC
TTGGTATAACAACTGTGCTTAACACCCTTAACGCCATTTCGTTCTTACTC
GACCAAGACAAGGAATGGGACTACTTCATCAACCTCAGCGGTGCCGATTA
CCCTCTTGTCACACCAGACCAATTACGTGACATTCTCGGCGACCCAGCAG
TTGTGCACCGGAAGTTGAGCTTTTTACAGACCACCAACTACTCAAACGCA
GCCACCGGCTCAGTTTACAGCGATCGGTTCTACCGTCTTCCCGTAGATTC
TGCTACCTTTAGCGTCATAAGGCCTCATGACCCATATGATCAGGGAGTGC
AGGCAGATCCGTGCATACAAGGCTGTCTCAAGACCCCCGGCAAAGTGGCC
CACCCTCTTTTTGAAAGCGAATACCCTGCCCATATCGTCAAGTCCGAAGC
ATGGGTTATATTGCATCGTTCCGCTGCGGAATTTGCGCTTAATTCGGGTC
TTTCTCGTCAACTGATTGCAGTTTTTGCAAACGTGCACTGTCCGGAAGAG
TTCTTCTTCAGTACATTGCTAACGCGTGCTGAGGAAACGCGAGATTCGAT
TGTTCATGATGCTTTCCGATTGGTTCTGTGGGGCATGTTCGACAGAGGCA
GTCGCCCTCCGGCAATTGATTCTGGGGATATTCCTGACATCGAGAAGATC
ATATCTAAGAAAGGAGGTTTGTTTGTTCGAAAACGTATGAAAGTTGATTC
TGACGTGCGTTCATATATCGATGATTATCTATTAGGAGTGGCTGAGGTCG
CGCAGAAAAATGACACCATACGAGAATCGTCCAAAATGTTTTCTCGAAAG
CAACGTATCCGTGTTCTGTGTGCTTCCCGCCATCATGTTGGTCATATTTT
CTCATCCACAACTTACGCGCAATACACGAAATGCTTGAAAGCATCGATGA
AAAGAGAAGACTCTTGA
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