Ggra4413.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4413.t1
Unique NameGgra4413.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:343910..345160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708026.1
Preferred nameTXLNB
PFAMsTaxilin
Max annot lvl2759|Eukaryota
KEGG rclassRC00141
KEGG koko:K06013,ko:K19535
KEGG ReactionR09845
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001775,GO:0002376,GO:0003674,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0008150,GO:0008283,GO:0009966,GO:0009987,GO:0010033,GO:0010469,GO:0010564,GO:0010646,GO:0010720,GO:0010975,GO:0010976,GO:0012505,GO:0016020,GO:0019221,GO:0022008,GO:0023051,GO:0023052,GO:0030016,GO:0030017,GO:0030154,GO:0030278,GO:0030372,GO:0030500,GO:0030545,GO:0031090,GO:0031344,GO:0031346,GO:0031965,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0034097,GO:0042113,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045321,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046649,GO:0046982,GO:0046983,GO:0048018,GO:0048518,GO:0048522,GO:0048583,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0065009,GO:0070167,GO:0070851,GO:0070887,GO:0071310,GO:0071345,GO:0098772,GO:0099080,GO:0099081,GO:0099512,GO:0120035,GO:2000026
Evalue6.11e-14
EggNOG OGsKOG1850@1|root,KOG1850@2759|Eukaryota
EC3.4.24.84
Descriptionsyntaxin binding
COG categoryS
BRITEko00000,ko00001,ko01000,ko01002,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4413Ggra4413Gracilaria gracilis GNS1m malegenetig00000898_pilon 343910..345160 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4413.t1.start1Ggra4413.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 343910..343912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4413.t1.CDS1Ggra4413.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 343910..345160 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4413.t1.exon1Ggra4413.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 343910..345160 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4413.t1.stop1Ggra4413.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 345158..345160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4413.t1Ggra4413.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 343910..345160 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4413.t1 ID=Ggra4413.t1|Name=Ggra4413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=417bp
MPRRARRPNAAEANSSRAPANEHAISARIQATFKKIIVALQDQRDLRCDL
ASTRARALVLDSEFVVLHTEFDRSVAARDKLDALSRELMRRNKLIDDEAE
QRILDEKKMTEEIVQRFNNAMTDINRKLNSQSRSREQRDRYVCTLRNKLR
DLRERYDMREQHFKQQIHRKHLEQQLAVAKHRELVEKHSKTITQLSDLRT
NLQALQTQQQQQQSLVDQYRSTIQESERYLQSTEQLYLSQKTQVEDMQAE
AKQLQSANAAARNANNSTNVHIKAMESESKRLEASITQKRDVERKERTKI
EALEKLCKQVTKERTELHSEILVMQDAWSNLKEEIEALKDQVGESSRIFE
ALQSIMNREPDVAGRGIFRNHKAIDDASNDELSRVRLVSGSKLDEQMPLA
ANASKPGPPNGIRPPG*
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spliced messenger RNA

>Ggra4413.t1 ID=Ggra4413.t1|Name=Ggra4413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000898_pilon:343910..345160+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGAAGAGCCAGGCGTCCCAACGCCGCCGAAGCCAACTCCAGCCG
AGCGCCCGCAAATGAACATGCCATCTCCGCGCGTATCCAGGCTACCTTCA
AGAAGATTATCGTCGCGCTGCAGGACCAGCGCGACCTTCGCTGTGACCTC
GCCAGTACCCGTGCTCGCGCCCTCGTGCTCGACTCTGAATTCGTCGTGCT
GCACACCGAATTCGACCGCTCCGTCGCCGCTAGAGACAAATTGGACGCGC
TTAGTCGTGAGCTAATGCGTCGGAATAAGCTCATTGACGACGAGGCTGAA
CAGCGTATCTTGGATGAAAAGAAGATGACGGAGGAGATTGTTCAACGCTT
TAACAATGCTATGACCGACATTAACCGCAAGTTGAACTCGCAGAGTCGAT
CACGGGAACAACGTGATCGATATGTCTGTACTTTGCGCAACAAGCTTCGC
GATCTTCGAGAACGATATGACATGCGCGAACAGCATTTCAAACAACAGAT
ACACCGAAAACATCTGGAGCAACAACTTGCGGTTGCAAAGCACCGAGAAC
TTGTAGAAAAGCATTCCAAAACTATCACACAGCTCTCTGATTTACGAACC
AACTTGCAAGCACTTCAaacacaacaacaacaacagcaaTCATTGGTTGA
TCAGTATCGAAGTACTATACAAGAAAGCGAGCGTTATCTACAGTCTACCG
AGCAGCTGTACCTCTCCCAAAAGACTCAGGTCGAAGATATGCAAGCTGAA
GCAAAACAGCTTCAAAGCGCCAACGCTGCCGCTAGAAACGCCAACAACTC
TACCAACGTTCACATAAAGGCTATGGAATCCGAGAGCAAGAGACTAGAAG
CCTCCATCACGCAAAAACGAGATGTAGAACGGAAAGAACGAACTAAAATC
GAAGCACTTGAGAAACTATGCAAACAAGTAACTAAAGAGCGTACTGAACT
GCACAGTGAAATCCTTGTCATGCAAGACGCCTGGTCAAATTTGAAGGAAG
AGATTGAGGCCTTGAAAGATCAAGTTGGTGAGAGTAGTCGCATATTTGAA
GCGTTGCAAAGCATCATGAATCGTGAACCGGATGTTGCGGGCAGAGGCAT
CTTCAGAAATCACAAGGCTATTGACGATGCCAGTAATGATGAACTGAGTC
GTGTGCGTTTGGTGTCGGGAAGCAAACTTGATGAACAGATGCCTCTGGCT
GCCAATGCATCAAAGCCAGGACCGCCGAACGGGATTCGCCCACCTGGGTG
A
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protein sequence of Ggra4413.t1

>Ggra4413.t1 ID=Ggra4413.t1|Name=Ggra4413.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=417bp
MPRRARRPNAAEANSSRAPANEHAISARIQATFKKIIVALQDQRDLRCDL
ASTRARALVLDSEFVVLHTEFDRSVAARDKLDALSRELMRRNKLIDDEAE
QRILDEKKMTEEIVQRFNNAMTDINRKLNSQSRSREQRDRYVCTLRNKLR
DLRERYDMREQHFKQQIHRKHLEQQLAVAKHRELVEKHSKTITQLSDLRT
NLQALQTQQQQQQSLVDQYRSTIQESERYLQSTEQLYLSQKTQVEDMQAE
AKQLQSANAAARNANNSTNVHIKAMESESKRLEASITQKRDVERKERTKI
EALEKLCKQVTKERTELHSEILVMQDAWSNLKEEIEALKDQVGESSRIFE
ALQSIMNREPDVAGRGIFRNHKAIDDASNDELSRVRLVSGSKLDEQMPLA
ANASKPGPPNGIRPPG*
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mRNA from alignment at tig00000898_pilon:343910..345160+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4413.t1 ID=Ggra4413.t1|Name=Ggra4413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000898_pilon:343910..345160+ (Gracilaria gracilis GNS1m male)
ATGCCCAGAAGAGCCAGGCGTCCCAACGCCGCCGAAGCCAACTCCAGCCG
AGCGCCCGCAAATGAACATGCCATCTCCGCGCGTATCCAGGCTACCTTCA
AGAAGATTATCGTCGCGCTGCAGGACCAGCGCGACCTTCGCTGTGACCTC
GCCAGTACCCGTGCTCGCGCCCTCGTGCTCGACTCTGAATTCGTCGTGCT
GCACACCGAATTCGACCGCTCCGTCGCCGCTAGAGACAAATTGGACGCGC
TTAGTCGTGAGCTAATGCGTCGGAATAAGCTCATTGACGACGAGGCTGAA
CAGCGTATCTTGGATGAAAAGAAGATGACGGAGGAGATTGTTCAACGCTT
TAACAATGCTATGACCGACATTAACCGCAAGTTGAACTCGCAGAGTCGAT
CACGGGAACAACGTGATCGATATGTCTGTACTTTGCGCAACAAGCTTCGC
GATCTTCGAGAACGATATGACATGCGCGAACAGCATTTCAAACAACAGAT
ACACCGAAAACATCTGGAGCAACAACTTGCGGTTGCAAAGCACCGAGAAC
TTGTAGAAAAGCATTCCAAAACTATCACACAGCTCTCTGATTTACGAACC
AACTTGCAAGCACTTCAaacacaacaacaacaacagcaaTCATTGGTTGA
TCAGTATCGAAGTACTATACAAGAAAGCGAGCGTTATCTACAGTCTACCG
AGCAGCTGTACCTCTCCCAAAAGACTCAGGTCGAAGATATGCAAGCTGAA
GCAAAACAGCTTCAAAGCGCCAACGCTGCCGCTAGAAACGCCAACAACTC
TACCAACGTTCACATAAAGGCTATGGAATCCGAGAGCAAGAGACTAGAAG
CCTCCATCACGCAAAAACGAGATGTAGAACGGAAAGAACGAACTAAAATC
GAAGCACTTGAGAAACTATGCAAACAAGTAACTAAAGAGCGTACTGAACT
GCACAGTGAAATCCTTGTCATGCAAGACGCCTGGTCAAATTTGAAGGAAG
AGATTGAGGCCTTGAAAGATCAAGTTGGTGAGAGTAGTCGCATATTTGAA
GCGTTGCAAAGCATCATGAATCGTGAACCGGATGTTGCGGGCAGAGGCAT
CTTCAGAAATCACAAGGCTATTGACGATGCCAGTAATGATGAACTGAGTC
GTGTGCGTTTGGTGTCGGGAAGCAAACTTGATGAACAGATGCCTCTGGCT
GCCAATGCATCAAAGCCAGGACCGCCGAACGGGATTCGCCCACCTGGGTG
A
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Coding sequence (CDS) from alignment at tig00000898_pilon:343910..345160+

>Ggra4413.t1 ID=Ggra4413.t1|Name=Ggra4413.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00000898_pilon:343910..345160+ (Gracilaria gracilis GNS1m male)
ATGCCCAGAAGAGCCAGGCGTCCCAACGCCGCCGAAGCCAACTCCAGCCG
AGCGCCCGCAAATGAACATGCCATCTCCGCGCGTATCCAGGCTACCTTCA
AGAAGATTATCGTCGCGCTGCAGGACCAGCGCGACCTTCGCTGTGACCTC
GCCAGTACCCGTGCTCGCGCCCTCGTGCTCGACTCTGAATTCGTCGTGCT
GCACACCGAATTCGACCGCTCCGTCGCCGCTAGAGACAAATTGGACGCGC
TTAGTCGTGAGCTAATGCGTCGGAATAAGCTCATTGACGACGAGGCTGAA
CAGCGTATCTTGGATGAAAAGAAGATGACGGAGGAGATTGTTCAACGCTT
TAACAATGCTATGACCGACATTAACCGCAAGTTGAACTCGCAGAGTCGAT
CACGGGAACAACGTGATCGATATGTCTGTACTTTGCGCAACAAGCTTCGC
GATCTTCGAGAACGATATGACATGCGCGAACAGCATTTCAAACAACAGAT
ACACCGAAAACATCTGGAGCAACAACTTGCGGTTGCAAAGCACCGAGAAC
TTGTAGAAAAGCATTCCAAAACTATCACACAGCTCTCTGATTTACGAACC
AACTTGCAAGCACTTCAaacacaacaacaacaacagcaaTCATTGGTTGA
TCAGTATCGAAGTACTATACAAGAAAGCGAGCGTTATCTACAGTCTACCG
AGCAGCTGTACCTCTCCCAAAAGACTCAGGTCGAAGATATGCAAGCTGAA
GCAAAACAGCTTCAAAGCGCCAACGCTGCCGCTAGAAACGCCAACAACTC
TACCAACGTTCACATAAAGGCTATGGAATCCGAGAGCAAGAGACTAGAAG
CCTCCATCACGCAAAAACGAGATGTAGAACGGAAAGAACGAACTAAAATC
GAAGCACTTGAGAAACTATGCAAACAAGTAACTAAAGAGCGTACTGAACT
GCACAGTGAAATCCTTGTCATGCAAGACGCCTGGTCAAATTTGAAGGAAG
AGATTGAGGCCTTGAAAGATCAAGTTGGTGAGAGTAGTCGCATATTTGAA
GCGTTGCAAAGCATCATGAATCGTGAACCGGATGTTGCGGGCAGAGGCAT
CTTCAGAAATCACAAGGCTATTGACGATGCCAGTAATGATGAACTGAGTC
GTGTGCGTTTGGTGTCGGGAAGCAAACTTGATGAACAGATGCCTCTGGCT
GCCAATGCATCAAAGCCAGGACCGCCGAACGGGATTCGCCCACCTGGGTG
A
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