Ggra4410.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4410.t1
Unique NameGgra4410.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:339143..339853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003283496.1
PFAMsV-SNARE_C
Max annot lvl554915|Amoebozoa
KEGG koko:K08496
KEGG Pathwayko04130,map04130
Evalue8.24e-18
EggNOG OGsKOG3251@1|root,KOG3251@2759|Eukaryota,3X9JC@554915|Amoebozoa
Descriptionvesicle fusion with Golgi apparatus
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4410Ggra4410Gracilaria gracilis GNS1m malegenetig00000898_pilon 339143..339853 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4410.t1.stop1Ggra4410.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 339143..339145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4410.t1.CDS1Ggra4410.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 339143..339853 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4410.t1.exon1Ggra4410.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 339143..339853 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4410.t1.start1Ggra4410.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 339851..339853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4410.t1Ggra4410.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 339143..339853 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4410.t1 ID=Ggra4410.t1|Name=Ggra4410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=237bp
MEETYRDTRRVLLEARNHLEALESASTNTQLDPQASAIVASAFQTNVQQL
VNNSTALRSLLVSQPPSTRQVWKARLKDLDDQIAELRAGDRRCNARFRTI
RNEKMMRDELFQRRVGAVGGAQQQQQQSLLSGDAVLRMGLAEENRSLKQS
GNMVSGILNTGTSALHKLLSQKGRLRGVKTKVLDVLNQVGVDRRLIARIE
RREYSDTVLVYSLMVLLLVLLALAVLYKYHRKRHAG*
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spliced messenger RNA

>Ggra4410.t1 ID=Ggra4410.t1|Name=Ggra4410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000898_pilon:339143..339853- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAGACGTACCGCGACACGAGGAGGGTGTTACTGGAGGCGCGCAA
TCACCTGGAGGCGCTGGAGTCGGCGTCCACCAACACGCAGCTCGATCCGC
AAGCGTCCGCAATCGTAGCGTCCGCGTTCCAGACCAACGTGCAACAGCTG
GTGAACAACTCCACGGCGCTACGCTCGCTGCTCGTCTCGCAGCCGCCGTC
CACGCGCCAGGTGTGGAAGGCGCGCCTCAAGGACCTGGACGACCAGATTG
CGGAGCTGCGCGCCGGCGACAGGCGCTGTAATGCGCGCTTTCGAACCATT
CGCAACGAGAAGATGATGAGGGATGAGCTGTTTCAACGGCGCGTGGGCGC
GGTGGGCGGTGCGCAGCAGCAGCAGCAGCAGTCACTCTTGTCGGGTGACG
CCGTGTTGAGGATGGGCCTGGCGGAAGAGAACCGGTCGTTGAAGCAGTCG
GGAAACATGGTGTCGGGCATTTTGAACACCGGCACCAGCGCGTTGCACAA
GCTGCTTTCGCAGAAGGGGCGCCTGAGAGGCGTCAAGACCAAGGTGTTGG
ACGTGCTCAACCAGGTGGGCGTGGACCGTCGACTGATTGCCAGAATTGAG
CGCAGAGAGTATTCCGACACGGTTTTGGTGTACTCGCTGATGGTGCTGTT
GTTGGTGCTGTTGGCGCTTGCTGTTTTATACAAGTATCATCGAAAGAGAC
ACGCGGGCTGA
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protein sequence of Ggra4410.t1

>Ggra4410.t1 ID=Ggra4410.t1|Name=Ggra4410.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=237bp
MEETYRDTRRVLLEARNHLEALESASTNTQLDPQASAIVASAFQTNVQQL
VNNSTALRSLLVSQPPSTRQVWKARLKDLDDQIAELRAGDRRCNARFRTI
RNEKMMRDELFQRRVGAVGGAQQQQQQSLLSGDAVLRMGLAEENRSLKQS
GNMVSGILNTGTSALHKLLSQKGRLRGVKTKVLDVLNQVGVDRRLIARIE
RREYSDTVLVYSLMVLLLVLLALAVLYKYHRKRHAG*
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mRNA from alignment at tig00000898_pilon:339143..339853-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4410.t1 ID=Ggra4410.t1|Name=Ggra4410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000898_pilon:339143..339853- (Gracilaria gracilis GNS1m male)
ATGGAGGAGACGTACCGCGACACGAGGAGGGTGTTACTGGAGGCGCGCAA
TCACCTGGAGGCGCTGGAGTCGGCGTCCACCAACACGCAGCTCGATCCGC
AAGCGTCCGCAATCGTAGCGTCCGCGTTCCAGACCAACGTGCAACAGCTG
GTGAACAACTCCACGGCGCTACGCTCGCTGCTCGTCTCGCAGCCGCCGTC
CACGCGCCAGGTGTGGAAGGCGCGCCTCAAGGACCTGGACGACCAGATTG
CGGAGCTGCGCGCCGGCGACAGGCGCTGTAATGCGCGCTTTCGAACCATT
CGCAACGAGAAGATGATGAGGGATGAGCTGTTTCAACGGCGCGTGGGCGC
GGTGGGCGGTGCGCAGCAGCAGCAGCAGCAGTCACTCTTGTCGGGTGACG
CCGTGTTGAGGATGGGCCTGGCGGAAGAGAACCGGTCGTTGAAGCAGTCG
GGAAACATGGTGTCGGGCATTTTGAACACCGGCACCAGCGCGTTGCACAA
GCTGCTTTCGCAGAAGGGGCGCCTGAGAGGCGTCAAGACCAAGGTGTTGG
ACGTGCTCAACCAGGTGGGCGTGGACCGTCGACTGATTGCCAGAATTGAG
CGCAGAGAGTATTCCGACACGGTTTTGGTGTACTCGCTGATGGTGCTGTT
GTTGGTGCTGTTGGCGCTTGCTGTTTTATACAAGTATCATCGAAAGAGAC
ACGCGGGCTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:339143..339853-

>Ggra4410.t1 ID=Ggra4410.t1|Name=Ggra4410.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=711bp|location=Sequence derived from alignment at tig00000898_pilon:339143..339853- (Gracilaria gracilis GNS1m male)
ATGGAGGAGACGTACCGCGACACGAGGAGGGTGTTACTGGAGGCGCGCAA
TCACCTGGAGGCGCTGGAGTCGGCGTCCACCAACACGCAGCTCGATCCGC
AAGCGTCCGCAATCGTAGCGTCCGCGTTCCAGACCAACGTGCAACAGCTG
GTGAACAACTCCACGGCGCTACGCTCGCTGCTCGTCTCGCAGCCGCCGTC
CACGCGCCAGGTGTGGAAGGCGCGCCTCAAGGACCTGGACGACCAGATTG
CGGAGCTGCGCGCCGGCGACAGGCGCTGTAATGCGCGCTTTCGAACCATT
CGCAACGAGAAGATGATGAGGGATGAGCTGTTTCAACGGCGCGTGGGCGC
GGTGGGCGGTGCGCAGCAGCAGCAGCAGCAGTCACTCTTGTCGGGTGACG
CCGTGTTGAGGATGGGCCTGGCGGAAGAGAACCGGTCGTTGAAGCAGTCG
GGAAACATGGTGTCGGGCATTTTGAACACCGGCACCAGCGCGTTGCACAA
GCTGCTTTCGCAGAAGGGGCGCCTGAGAGGCGTCAAGACCAAGGTGTTGG
ACGTGCTCAACCAGGTGGGCGTGGACCGTCGACTGATTGCCAGAATTGAG
CGCAGAGAGTATTCCGACACGGTTTTGGTGTACTCGCTGATGGTGCTGTT
GTTGGTGCTGTTGGCGCTTGCTGTTTTATACAAGTATCATCGAAAGAGAC
ACGCGGGCTGA
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