Ggra4409.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4409.t1
Unique NameGgra4409.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:338364..339002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010066376.1
PFAMsPeptidase_C97
Max annot lvl35493|Streptophyta
Evalue2.65e-33
EggNOG OGsKOG0324@1|root,KOG0324@2759|Eukaryota,37NI2@33090|Viridiplantae,3GDN9@35493|Streptophyta
DescriptiondeSI-like protein At4g17486
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4409Ggra4409Gracilaria gracilis GNS1m malegenetig00000898_pilon 338364..339002 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4409.t1.start1Ggra4409.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 338364..338366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4409.t1.CDS1Ggra4409.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 338364..339002 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4409.t1.exon1Ggra4409.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 338364..339002 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4409.t1.stop1Ggra4409.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 339000..339002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4409.t1Ggra4409.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 338364..339002 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4409.t1 ID=Ggra4409.t1|Name=Ggra4409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MVSASHQPLRNATPRRQTLVDIPSDRLHTETAPDSAPSNAVFLNVYDVQT
PDDPTIIPRVNNVLIHCGIGIFHTGVEVWGREFAFGAHPDGESGIFEVHP
RQCPAVRYRLSIALGVTKMSERQVHDIITYLGRTEYIGNRYSLISRNCNT
FSNQFTNLLGVHHRFPRWVNRLATIAFNVRCLLPEAIDAPFKDSVPTATI
KEPRKPPPVALL*
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spliced messenger RNA

>Ggra4409.t1 ID=Ggra4409.t1|Name=Ggra4409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000898_pilon:338364..339002+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAGTGCTTCGCATCAGCCGCTTCGAAACGCCACGCCCCGTCGTCA
AACGCTCGTCGACATCCCGTCCGATCGTCTGCACACCGAAACCGCCCCCG
ATTCCGCCCCGTCAAACGCCGTCTTTCTCAACGTCTACGACGTGCAGACG
CCCGACGATCCCACCATCATCCCGCGCGTCAACAACGTGCTCATCCACTG
CGGCATCGGCATCTTCCACACCGGCGTCGAGGTATGGGGGAGGGAGTTTG
CGTTTGGCGCCCATCCCGACGGCGAGTCGGGCATCTTCGAGGTGCACCCG
CGCCAGTGCCCGGCCGTGCGCTACCGCCTCTCCATCGCGTTGGGCGTCAC
CAAAATGTCCGAGCGACAGGTGCATGATATTATTACCTACCTGGGGCGCA
CAGAGTATATCGGCAATCGCTACTCGCTCATTTCCCGCAATTGTAATACC
TTTTCAAATCAGTTTACAAACTTGTTGGGTGTACACCATCGCTTTCCTCG
CTGGGTCAATCGATTGGCTACCATTGCGTTTAATGTGCGCTGTTTGTTAC
CAGAGGCCATTGATGCTCCTTTTAAAGATAGTGTGCCGACTGCCACCATT
AAGGAACCACGAAAACCGCCGCCTGTAGCCTTGTTGTAG
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protein sequence of Ggra4409.t1

>Ggra4409.t1 ID=Ggra4409.t1|Name=Ggra4409.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MVSASHQPLRNATPRRQTLVDIPSDRLHTETAPDSAPSNAVFLNVYDVQT
PDDPTIIPRVNNVLIHCGIGIFHTGVEVWGREFAFGAHPDGESGIFEVHP
RQCPAVRYRLSIALGVTKMSERQVHDIITYLGRTEYIGNRYSLISRNCNT
FSNQFTNLLGVHHRFPRWVNRLATIAFNVRCLLPEAIDAPFKDSVPTATI
KEPRKPPPVALL*
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mRNA from alignment at tig00000898_pilon:338364..339002+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4409.t1 ID=Ggra4409.t1|Name=Ggra4409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000898_pilon:338364..339002+ (Gracilaria gracilis GNS1m male)
ATGGTCAGTGCTTCGCATCAGCCGCTTCGAAACGCCACGCCCCGTCGTCA
AACGCTCGTCGACATCCCGTCCGATCGTCTGCACACCGAAACCGCCCCCG
ATTCCGCCCCGTCAAACGCCGTCTTTCTCAACGTCTACGACGTGCAGACG
CCCGACGATCCCACCATCATCCCGCGCGTCAACAACGTGCTCATCCACTG
CGGCATCGGCATCTTCCACACCGGCGTCGAGGTATGGGGGAGGGAGTTTG
CGTTTGGCGCCCATCCCGACGGCGAGTCGGGCATCTTCGAGGTGCACCCG
CGCCAGTGCCCGGCCGTGCGCTACCGCCTCTCCATCGCGTTGGGCGTCAC
CAAAATGTCCGAGCGACAGGTGCATGATATTATTACCTACCTGGGGCGCA
CAGAGTATATCGGCAATCGCTACTCGCTCATTTCCCGCAATTGTAATACC
TTTTCAAATCAGTTTACAAACTTGTTGGGTGTACACCATCGCTTTCCTCG
CTGGGTCAATCGATTGGCTACCATTGCGTTTAATGTGCGCTGTTTGTTAC
CAGAGGCCATTGATGCTCCTTTTAAAGATAGTGTGCCGACTGCCACCATT
AAGGAACCACGAAAACCGCCGCCTGTAGCCTTGTTGTAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:338364..339002+

>Ggra4409.t1 ID=Ggra4409.t1|Name=Ggra4409.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000898_pilon:338364..339002+ (Gracilaria gracilis GNS1m male)
ATGGTCAGTGCTTCGCATCAGCCGCTTCGAAACGCCACGCCCCGTCGTCA
AACGCTCGTCGACATCCCGTCCGATCGTCTGCACACCGAAACCGCCCCCG
ATTCCGCCCCGTCAAACGCCGTCTTTCTCAACGTCTACGACGTGCAGACG
CCCGACGATCCCACCATCATCCCGCGCGTCAACAACGTGCTCATCCACTG
CGGCATCGGCATCTTCCACACCGGCGTCGAGGTATGGGGGAGGGAGTTTG
CGTTTGGCGCCCATCCCGACGGCGAGTCGGGCATCTTCGAGGTGCACCCG
CGCCAGTGCCCGGCCGTGCGCTACCGCCTCTCCATCGCGTTGGGCGTCAC
CAAAATGTCCGAGCGACAGGTGCATGATATTATTACCTACCTGGGGCGCA
CAGAGTATATCGGCAATCGCTACTCGCTCATTTCCCGCAATTGTAATACC
TTTTCAAATCAGTTTACAAACTTGTTGGGTGTACACCATCGCTTTCCTCG
CTGGGTCAATCGATTGGCTACCATTGCGTTTAATGTGCGCTGTTTGTTAC
CAGAGGCCATTGATGCTCCTTTTAAAGATAGTGTGCCGACTGCCACCATT
AAGGAACCACGAAAACCGCCGCCTGTAGCCTTGTTGTAG
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