Ggra4406.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4406.t1
Unique NameGgra4406.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:332744..334545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704070.1
Preferred nameATP6V1H
PFAMsV-ATPase_H_C,V-ATPase_H_N
Max annot lvl2759|Eukaryota
KEGG koko:K02144
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0006403,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0006897,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008340,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016032,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030234,GO:0030641,GO:0031090,GO:0031224,GO:0031323,GO:0031329,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033227,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050690,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Evalue4.77e-52
EggNOG OGsCOG5231@1|root,KOG2759@2759|Eukaryota
Descriptionproton-transporting ATPase activity, rotational mechanism
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4406Ggra4406Gracilaria gracilis GNS1m malegenetig00000898_pilon 332744..334545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4406.t1Ggra4406.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 332744..334545 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4406.t1.stop1Ggra4406.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 332744..332746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4406.t1.CDS1Ggra4406.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 332744..334132 -
Ggra4406.t1.CDS2Ggra4406.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 334239..334370 -
Ggra4406.t1.CDS3Ggra4406.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 334504..334545 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4406.t1.exon1Ggra4406.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 332744..334132 -
Ggra4406.t1.exon2Ggra4406.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 334239..334370 -
Ggra4406.t1.exon3Ggra4406.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 334504..334545 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4406.t1.intron1Ggra4406.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 334133..334238 -
Ggra4406.t1.intron2Ggra4406.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 334371..334503 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4406.t1.start1Ggra4406.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 334543..334545 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4406.t1 ID=Ggra4406.t1|Name=Ggra4406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=521bp
MAPATRPPSSSPWTVVLQGTSLSYEDATQLDKLEYALGISPSSVDRYLAQ
DAAVRGISAALSEASKVITTVDAHIRAGKLLSAVSDYVTSKSRASAFENF
LDGLGPSLFTSFVAALDNEKEVSSWYLVALGPLLGSRSLAAYAKSTGKNA
EIEQQKRAFVSAAAEILATITTESLLASNEDDDQDEPESTSAALPLSSQP
GMESVSLSSIASGRGYIPTVADIGAPMPQGYASAGDEQLGRILSGVSRFL
STDQNRYLLCQVKPQCGPVPSVLAGLLDKDVGMPVQVAYQAIFCLWLLSF
VNKQDSKSTAMEAISDALEEAAVPRRLTHVLRDIWAEKVVRVSLATLRNM
LTMSSTLRKEMVGAGLVNAIQSLCFRRWNDEDIREDIGVVDEALQSELAS
MSNFDVYRAEVLSGALEWTPAHTDDTFWEENAEKLERNKQEVLRCLVRLL
HQSNEETVLAVACNDLAQFIKHNPRGRIIAQSLAVKGRLMELMVTGEGEV
RRYALNCVQVLLIRWNRQES*
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spliced messenger RNA

>Ggra4406.t1 ID=Ggra4406.t1|Name=Ggra4406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000898_pilon:332744..334545- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCGCTACTCGCCCGCCTTCTTCTTCCCCGTGGACGGTTGTTCT
GCAGGGTACCAGTCTATCGTATGAGGATGCAACTCAACTCGACAAGTTAG
AATACGCACTCGGCATCAGCCCTTCTTCCGTCGACAGGTATCTCGCTCAG
GACGCTGCTGTCCGAGGTATATCGGCCGCTCTATCGGAAGCTTCAAAAGT
CATCACTACCGTTGATGCACACATCCGAGCTGGGAAGCTTCTCTCCGCCG
TTTCAGATTACGTCACCTCAAAGTCACGCGCGTCGGCCTTCGAAAACTTT
CTCGACGGCTTGGGCCCCTCTCTCTTCACCAGCTTTGTCGCCGCTCTCGA
CAATGAGAAGGAAGTCTCCTCATGGTATCTCGTCGCCCTAGGCCCTCTTC
TCGGCTCTCGTTCGCTTGCTGCGTACGCCAAGAGCACAGGAAAGAACGCC
GAAATCGAGCAACAAAAGCGTGCCTTCGTGTCAGCCGCCGCTGAGATTCT
GGCCACTATCACCACCGAGAGTTTGTTGGCAAGCAATGAGGATGATGATC
AAGACGAACCTGAATCCACGTCCGCCGCGCTGCCGCTCTCGTCGCAGCCG
GGAATGGAGTCTGTTAGTCTTTCGTCCATTGCTTCTGGGCGAGGCTATAT
TCCCACCGTGGCGGACATTGGCGCACCAATGCCCCAAGGCTATGCTAGTG
CTGGCGATGAACAGCTTGGACGCATTCTGTCGGGTGTGTCAAGATTCCTC
TCCACAGACCAAAACCGATACCTCCTCTGCCAGGTGAAGCCGCAATGCGG
CCCCGTTCCGAGCGTTCTAGCCGGTCTTCTTGACAAGGATGTTGGCATGC
CGGTGCAGGTCGCCTACCAAGCTATCTTCTGTCTGTGGCTCTTGTCTTTT
GTCAACAAGCAGGATTCGAAATCTACCGCTATGGAGGCTATCTCAGATGC
CCTTGAAGAGGCCGCTGTTCCGCGCCGTCTCACTCATGTGCTTCGTGATA
TCTGGGCAGAGAAGGTTGTCCGTGTTTCTCTGGCTACGCTGCGGAACATG
CTTACCATGTCAAGCACCTTGAGGAAAGAAATGGTTGGCGCTGGCCTTGT
CAATGCAATCCAGTCTTTGTGCTTCAGGAGGTGGAATGATGAAGACATCC
GCGAGGACATCGGCGTTGTGGACGAAGCTCTTCAGTCAGAACTGGCTTCC
ATGAGCAATTTTGACGTCTACAGGGCCGAAGTGTTATCAGGTGCGCTTGA
ATGGACACCTGCCCATACCGACGATACCTTTTGGGAGGAGAACGCGGAGA
AGCTGGAGCGAAACAAACAGGAAGTTTTGCGCTGCCTGGTTCGTCTCCTG
CACCAATCGAACGAAGAAACTGTATTGGCTGTGGCTTGCAACGATCTAGC
TCAGTTTATCAAGCACAATCCGCGTGGAAGAATCATTGCGCAATCTCTGG
CCGTAAAGGGCAGGTTAATGGAACTGATGGTCACCGGAGAAGGAGAAGTT
CGCCGCTACGCTCTAAACTGTGTACAAGTATTGTTGATCCGATGGAATCG
CCAAGAATCATAG
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protein sequence of Ggra4406.t1

>Ggra4406.t1 ID=Ggra4406.t1|Name=Ggra4406.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MAPATRPPSSSPWTVVLQGTSLSYEDATQLDKLEYALGISPSSVDRYLAQ
DAAVRGISAALSEASKVITTVDAHIRAGKLLSAVSDYVTSKSRASAFENF
LDGLGPSLFTSFVAALDNEKEVSSWYLVALGPLLGSRSLAAYAKSTGKNA
EIEQQKRAFVSAAAEILATITTESLLASNEDDDQDEPESTSAALPLSSQP
GMESVSLSSIASGRGYIPTVADIGAPMPQGYASAGDEQLGRILSGVSRFL
STDQNRYLLCQVKPQCGPVPSVLAGLLDKDVGMPVQVAYQAIFCLWLLSF
VNKQDSKSTAMEAISDALEEAAVPRRLTHVLRDIWAEKVVRVSLATLRNM
LTMSSTLRKEMVGAGLVNAIQSLCFRRWNDEDIREDIGVVDEALQSELAS
MSNFDVYRAEVLSGALEWTPAHTDDTFWEENAEKLERNKQEVLRCLVRLL
HQSNEETVLAVACNDLAQFIKHNPRGRIIAQSLAVKGRLMELMVTGEGEV
RRYALNCVQVLLIRWNRQES*
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mRNA from alignment at tig00000898_pilon:332744..334545-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4406.t1 ID=Ggra4406.t1|Name=Ggra4406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1802bp|location=Sequence derived from alignment at tig00000898_pilon:332744..334545- (Gracilaria gracilis GNS1m male)
ATGGCTCCCGCTACTCGCCCGCCTTCTTCTTCCCCGTGGACGGTGCGTTC
TGCGTATGCATCTCGCCGCTCGCTCTTTTTGTTTTTTGTGGCTCGCTCCG
TGTCATGTGCGTTCTGACATTATCTTTTGCTTTGATGCGCCTGTGATTGT
CTGCCTTCACATCACTTCAACAAAGGTTGTTCTGCAGGGTACCAGTCTAT
CGTATGAGGATGCAACTCAACTCGACAAGTTAGAATACGCACTCGGCATC
AGCCCTTCTTCCGTCGACAGGTATCTCGCTCAGGACGCTGCTGTCCGAGG
TATATCGGTAAGGATTCAACTCAAGTCCCAATTCCACTCGTCCACCTTGT
GTTTACACTTGCCCCATCACGTAATCTAACCACGTCACAATTCTTCCCGC
CTCATCCATATAGGCCGCTCTATCGGAAGCTTCAAAAGTCATCACTACCG
TTGATGCACACATCCGAGCTGGGAAGCTTCTCTCCGCCGTTTCAGATTAC
GTCACCTCAAAGTCACGCGCGTCGGCCTTCGAAAACTTTCTCGACGGCTT
GGGCCCCTCTCTCTTCACCAGCTTTGTCGCCGCTCTCGACAATGAGAAGG
AAGTCTCCTCATGGTATCTCGTCGCCCTAGGCCCTCTTCTCGGCTCTCGT
TCGCTTGCTGCGTACGCCAAGAGCACAGGAAAGAACGCCGAAATCGAGCA
ACAAAAGCGTGCCTTCGTGTCAGCCGCCGCTGAGATTCTGGCCACTATCA
CCACCGAGAGTTTGTTGGCAAGCAATGAGGATGATGATCAAGACGAACCT
GAATCCACGTCCGCCGCGCTGCCGCTCTCGTCGCAGCCGGGAATGGAGTC
TGTTAGTCTTTCGTCCATTGCTTCTGGGCGAGGCTATATTCCCACCGTGG
CGGACATTGGCGCACCAATGCCCCAAGGCTATGCTAGTGCTGGCGATGAA
CAGCTTGGACGCATTCTGTCGGGTGTGTCAAGATTCCTCTCCACAGACCA
AAACCGATACCTCCTCTGCCAGGTGAAGCCGCAATGCGGCCCCGTTCCGA
GCGTTCTAGCCGGTCTTCTTGACAAGGATGTTGGCATGCCGGTGCAGGTC
GCCTACCAAGCTATCTTCTGTCTGTGGCTCTTGTCTTTTGTCAACAAGCA
GGATTCGAAATCTACCGCTATGGAGGCTATCTCAGATGCCCTTGAAGAGG
CCGCTGTTCCGCGCCGTCTCACTCATGTGCTTCGTGATATCTGGGCAGAG
AAGGTTGTCCGTGTTTCTCTGGCTACGCTGCGGAACATGCTTACCATGTC
AAGCACCTTGAGGAAAGAAATGGTTGGCGCTGGCCTTGTCAATGCAATCC
AGTCTTTGTGCTTCAGGAGGTGGAATGATGAAGACATCCGCGAGGACATC
GGCGTTGTGGACGAAGCTCTTCAGTCAGAACTGGCTTCCATGAGCAATTT
TGACGTCTACAGGGCCGAAGTGTTATCAGGTGCGCTTGAATGGACACCTG
CCCATACCGACGATACCTTTTGGGAGGAGAACGCGGAGAAGCTGGAGCGA
AACAAACAGGAAGTTTTGCGCTGCCTGGTTCGTCTCCTGCACCAATCGAA
CGAAGAAACTGTATTGGCTGTGGCTTGCAACGATCTAGCTCAGTTTATCA
AGCACAATCCGCGTGGAAGAATCATTGCGCAATCTCTGGCCGTAAAGGGC
AGGTTAATGGAACTGATGGTCACCGGAGAAGGAGAAGTTCGCCGCTACGC
TCTAAACTGTGTACAAGTATTGTTGATCCGATGGAATCGCCAAGAATCAT
AG
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Coding sequence (CDS) from alignment at tig00000898_pilon:332744..334545-

>Ggra4406.t1 ID=Ggra4406.t1|Name=Ggra4406.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00000898_pilon:332744..334545- (Gracilaria gracilis GNS1m male)
ATGGCTCCCGCTACTCGCCCGCCTTCTTCTTCCCCGTGGACGGTTGTTCT
GCAGGGTACCAGTCTATCGTATGAGGATGCAACTCAACTCGACAAGTTAG
AATACGCACTCGGCATCAGCCCTTCTTCCGTCGACAGGTATCTCGCTCAG
GACGCTGCTGTCCGAGGTATATCGGCCGCTCTATCGGAAGCTTCAAAAGT
CATCACTACCGTTGATGCACACATCCGAGCTGGGAAGCTTCTCTCCGCCG
TTTCAGATTACGTCACCTCAAAGTCACGCGCGTCGGCCTTCGAAAACTTT
CTCGACGGCTTGGGCCCCTCTCTCTTCACCAGCTTTGTCGCCGCTCTCGA
CAATGAGAAGGAAGTCTCCTCATGGTATCTCGTCGCCCTAGGCCCTCTTC
TCGGCTCTCGTTCGCTTGCTGCGTACGCCAAGAGCACAGGAAAGAACGCC
GAAATCGAGCAACAAAAGCGTGCCTTCGTGTCAGCCGCCGCTGAGATTCT
GGCCACTATCACCACCGAGAGTTTGTTGGCAAGCAATGAGGATGATGATC
AAGACGAACCTGAATCCACGTCCGCCGCGCTGCCGCTCTCGTCGCAGCCG
GGAATGGAGTCTGTTAGTCTTTCGTCCATTGCTTCTGGGCGAGGCTATAT
TCCCACCGTGGCGGACATTGGCGCACCAATGCCCCAAGGCTATGCTAGTG
CTGGCGATGAACAGCTTGGACGCATTCTGTCGGGTGTGTCAAGATTCCTC
TCCACAGACCAAAACCGATACCTCCTCTGCCAGGTGAAGCCGCAATGCGG
CCCCGTTCCGAGCGTTCTAGCCGGTCTTCTTGACAAGGATGTTGGCATGC
CGGTGCAGGTCGCCTACCAAGCTATCTTCTGTCTGTGGCTCTTGTCTTTT
GTCAACAAGCAGGATTCGAAATCTACCGCTATGGAGGCTATCTCAGATGC
CCTTGAAGAGGCCGCTGTTCCGCGCCGTCTCACTCATGTGCTTCGTGATA
TCTGGGCAGAGAAGGTTGTCCGTGTTTCTCTGGCTACGCTGCGGAACATG
CTTACCATGTCAAGCACCTTGAGGAAAGAAATGGTTGGCGCTGGCCTTGT
CAATGCAATCCAGTCTTTGTGCTTCAGGAGGTGGAATGATGAAGACATCC
GCGAGGACATCGGCGTTGTGGACGAAGCTCTTCAGTCAGAACTGGCTTCC
ATGAGCAATTTTGACGTCTACAGGGCCGAAGTGTTATCAGGTGCGCTTGA
ATGGACACCTGCCCATACCGACGATACCTTTTGGGAGGAGAACGCGGAGA
AGCTGGAGCGAAACAAACAGGAAGTTTTGCGCTGCCTGGTTCGTCTCCTG
CACCAATCGAACGAAGAAACTGTATTGGCTGTGGCTTGCAACGATCTAGC
TCAGTTTATCAAGCACAATCCGCGTGGAAGAATCATTGCGCAATCTCTGG
CCGTAAAGGGCAGGTTAATGGAACTGATGGTCACCGGAGAAGGAGAAGTT
CGCCGCTACGCTCTAAACTGTGTACAAGTATTGTTGATCCGATGGAATCG
CCAAGAATCATAG
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