Ggra4405.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4405.t2
Unique NameGgra4405.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:330483..331501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706891.1
Preferred namePANK4
PFAMsDUF89,Fumble
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K09680
KEGG ReactionR02971,R03018,R04391
KEGG Pathwayko00770,ko01100,map00770,map01100
KEGG ModuleM00120
GOsGO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue5.88e-92
EggNOG OGsCOG5146@1|root,KOG2201@2759|Eukaryota
EC2.7.1.33
Descriptionpantothenate kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4405Ggra4405Gracilaria gracilis GNS1m malegenetig00000898_pilon 330483..332249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4405.t2Ggra4405.t2Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 330483..331501 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4405.t2.start1Ggra4405.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 330483..330485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4405.t2.CDS1Ggra4405.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 330483..331384 +
Ggra4405.t2.CDS2Ggra4405.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 331459..331501 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4405.t2.exon1Ggra4405.t2.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 330483..331384 +
Ggra4405.t2.exon2Ggra4405.t2.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 331459..331501 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4405.t2.intron1Ggra4405.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 331385..331458 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4405.t2.stop1Ggra4405.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 331499..331501 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4405.t2 ID=Ggra4405.t2|Name=Ggra4405.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp
MPQSPTQSHSTQPELVKVDTALTVLAQINLLEESNALALDIGGSLAKLIY
LQPHTHHKTNPPPLKIHQVDGTVANALSVHVPVLNGTLHFFAFESRNIHQ
MLRFIRRNWPHHIRRYIRATGGGSYKYETAFREQIGVLLTRLDEMTSTVA
GLNFLLCNVENEVYIYSQPQPDRPPLPQDIPQSTRTFAPVNKNPFPYLLV
NIGSGVSIVKVTDHGKFERVSGSSLGGGTFWGLARMLLDCQTFDQVIDLT
HEGDNRNVDMLVGDIYGGSYENIGLDASVIAASFGKATMRKEYTRHQVST
CPRSRPHVEVIGHW*
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spliced messenger RNA

>Ggra4405.t2 ID=Ggra4405.t2|Name=Ggra4405.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000898_pilon:330483..331501+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGTCACCGACGCAATCACACTCCACGCAGCCGGAGCTCGTCAA
AGTTGACACCGCGCTCACTGTGCTCGCACAGATCAACCTGCTTGAGGAGT
CCAATGCGCTCGCTCTCGACATTGGTGGATCCCTGGCCAAACTCATCTAC
CTGCAGCCGCATACGCACCACAAAACAAATCCACCCCCACTCAAGATTCA
CCAGGTCGATGGCACAGTTGCCAATGCTCTGTCGGTGCATGTGCCCGTTT
TAAACGGCACGCTGCACTTCTTTGCGTTCGAGTCCAGAAACATTCATCAA
ATGCTGCGTTTCATTCGACGTAACTGGCCGCACCACATCCGTAGGTATAT
ACGCGCCACTGGTGGTGGTTCTTACAAGTATGAGACCGCATTTCGCGAAC
AGATTGGCGTGTTGCTCACTAGACTGGATGAGATGACCTCAACAGTAGCC
GGTCTCAACTTTCTGCTTTGCAATGTAGAGAATGAAGTCTATATTTATTC
ACAACCTCAGCCCGACCGCCCTCCGTTGCCGCAGGACATTCCGCAGAGCA
CCCGTACTTTTGCGCCTGTCAATAAGAACCCGTTTCCTTATCTGCTTGTT
AACATTGGCAGTGGCGTTTCCATTGTAAAGGTAACAGACCATGGAAAATT
CGAGCGCGTCAGCGGAAGTTCGCTCGGCGGCGGCACTTTCTGGGGGCTGG
CCAGAATGTTACTTGATTGCCAAACCTTTGATCAGGTCATCGACCTTACC
CACGAGGGAGACAATCGCAACGTTGACATGCTTGTCGGTGACATTTACGG
CGGCTCCTACGAAAACATTGGTCTTGATGCTAGTGTGATCGCTGCCTCGT
TTGGAAAAGCCACAATGCGAAAGGAGTACACTCGCCACCAAGTCAGCACC
TGTCCCAGGAGTAGGCCGCATGTTGAAGTCATTGGGCATTGGTAA
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protein sequence of Ggra4405.t2

>Ggra4405.t2 ID=Ggra4405.t2|Name=Ggra4405.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MPQSPTQSHSTQPELVKVDTALTVLAQINLLEESNALALDIGGSLAKLIY
LQPHTHHKTNPPPLKIHQVDGTVANALSVHVPVLNGTLHFFAFESRNIHQ
MLRFIRRNWPHHIRRYIRATGGGSYKYETAFREQIGVLLTRLDEMTSTVA
GLNFLLCNVENEVYIYSQPQPDRPPLPQDIPQSTRTFAPVNKNPFPYLLV
NIGSGVSIVKVTDHGKFERVSGSSLGGGTFWGLARMLLDCQTFDQVIDLT
HEGDNRNVDMLVGDIYGGSYENIGLDASVIAASFGKATMRKEYTRHQVST
CPRSRPHVEVIGHW*
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mRNA from alignment at tig00000898_pilon:330483..331501+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4405.t2 ID=Ggra4405.t2|Name=Ggra4405.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1019bp|location=Sequence derived from alignment at tig00000898_pilon:330483..331501+ (Gracilaria gracilis GNS1m male)
ATGCCGCAGTCACCGACGCAATCACACTCCACGCAGCCGGAGCTCGTCAA
AGTTGACACCGCGCTCACTGTGCTCGCACAGATCAACCTGCTTGAGGAGT
CCAATGCGCTCGCTCTCGACATTGGTGGATCCCTGGCCAAACTCATCTAC
CTGCAGCCGCATACGCACCACAAAACAAATCCACCCCCACTCAAGATTCA
CCAGGTCGATGGCACAGTTGCCAATGCTCTGTCGGTGCATGTGCCCGTTT
TAAACGGCACGCTGCACTTCTTTGCGTTCGAGTCCAGAAACATTCATCAA
ATGCTGCGTTTCATTCGACGTAACTGGCCGCACCACATCCGTAGGTATAT
ACGCGCCACTGGTGGTGGTTCTTACAAGTATGAGACCGCATTTCGCGAAC
AGATTGGCGTGTTGCTCACTAGACTGGATGAGATGACCTCAACAGTAGCC
GGTCTCAACTTTCTGCTTTGCAATGTAGAGAATGAAGTCTATATTTATTC
ACAACCTCAGCCCGACCGCCCTCCGTTGCCGCAGGACATTCCGCAGAGCA
CCCGTACTTTTGCGCCTGTCAATAAGAACCCGTTTCCTTATCTGCTTGTT
AACATTGGCAGTGGCGTTTCCATTGTAAAGGTAACAGACCATGGAAAATT
CGAGCGCGTCAGCGGAAGTTCGCTCGGCGGCGGCACTTTCTGGGGGCTGG
CCAGAATGTTACTTGATTGCCAAACCTTTGATCAGGTCATCGACCTTACC
CACGAGGGAGACAATCGCAACGTTGACATGCTTGTCGGTGACATTTACGG
CGGCTCCTACGAAAACATTGGTCTTGATGCTAGTGTGATCGCTGCCTCGT
TTGGAAAAGCCACAATGCGAAAGGAGTACACTCGCCACCAAGTCAGCACC
TGGTCCCTTATCAAAGACCGCTTCCGCAGAGCCACTTGGGGTACAATTGA
CCTTTGGCTGTCCTTCCTCCACGCAGTCCCAGGAGTAGGCCGCATGTTGA
AGTCATTGGGCATTGGTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:330483..331501+

>Ggra4405.t2 ID=Ggra4405.t2|Name=Ggra4405.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=945bp|location=Sequence derived from alignment at tig00000898_pilon:330483..331501+ (Gracilaria gracilis GNS1m male)
ATGCCGCAGTCACCGACGCAATCACACTCCACGCAGCCGGAGCTCGTCAA
AGTTGACACCGCGCTCACTGTGCTCGCACAGATCAACCTGCTTGAGGAGT
CCAATGCGCTCGCTCTCGACATTGGTGGATCCCTGGCCAAACTCATCTAC
CTGCAGCCGCATACGCACCACAAAACAAATCCACCCCCACTCAAGATTCA
CCAGGTCGATGGCACAGTTGCCAATGCTCTGTCGGTGCATGTGCCCGTTT
TAAACGGCACGCTGCACTTCTTTGCGTTCGAGTCCAGAAACATTCATCAA
ATGCTGCGTTTCATTCGACGTAACTGGCCGCACCACATCCGTAGGTATAT
ACGCGCCACTGGTGGTGGTTCTTACAAGTATGAGACCGCATTTCGCGAAC
AGATTGGCGTGTTGCTCACTAGACTGGATGAGATGACCTCAACAGTAGCC
GGTCTCAACTTTCTGCTTTGCAATGTAGAGAATGAAGTCTATATTTATTC
ACAACCTCAGCCCGACCGCCCTCCGTTGCCGCAGGACATTCCGCAGAGCA
CCCGTACTTTTGCGCCTGTCAATAAGAACCCGTTTCCTTATCTGCTTGTT
AACATTGGCAGTGGCGTTTCCATTGTAAAGGTAACAGACCATGGAAAATT
CGAGCGCGTCAGCGGAAGTTCGCTCGGCGGCGGCACTTTCTGGGGGCTGG
CCAGAATGTTACTTGATTGCCAAACCTTTGATCAGGTCATCGACCTTACC
CACGAGGGAGACAATCGCAACGTTGACATGCTTGTCGGTGACATTTACGG
CGGCTCCTACGAAAACATTGGTCTTGATGCTAGTGTGATCGCTGCCTCGT
TTGGAAAAGCCACAATGCGAAAGGAGTACACTCGCCACCAAGTCAGCACC
TGTCCCAGGAGTAGGCCGCATGTTGAAGTCATTGGGCATTGGTAA
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