Ggra4405.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4405.t1
Unique Name	Ggra4405.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	589

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:330483..332249 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706891.1
Preferred name	PANK4
PFAMs	DUF89,Fumble
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00017
KEGG ko	ko:K09680
KEGG Reaction	R02971,R03018,R04391
KEGG Pathway	ko00770,ko01100,map00770,map01100
KEGG Module	M00120
GOs	GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	9.51e-143
EggNOG OGs	COG5146@1\|root,KOG2201@2759\|Eukaryota
EC	2.7.1.33
Description	pantothenate kinase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4405	Ggra4405	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 330483..332249 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4405.t1.start1	Ggra4405.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 330483..330485 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4405.t1.CDS1	Ggra4405.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 330483..332249 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4405.t1.exon1	Ggra4405.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 330483..332249 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4405.t1.stop1	Ggra4405.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 332247..332249 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4405.t1	Ggra4405.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 330483..332249 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:330483..332249+
coding sequence from alignment at tig00000898_pilon:330483..332249+

mRNA sequence

>Ggra4405.t1 ID=Ggra4405.t1|Name=Ggra4405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=589bp
MPQSPTQSHSTQPELVKVDTALTVLAQINLLEESNALALDIGGSLAKLIY
LQPHTHHKTNPPPLKIHQVDGTVANALSVHVPVLNGTLHFFAFESRNIHQ
MLRFIRRNWPHHIRRYIRATGGGSYKYETAFREQIGVLLTRLDEMTSTVA
GLNFLLCNVENEVYIYSQPQPDRPPLPQDIPQSTRTFAPVNKNPFPYLLV
NIGSGVSIVKVTDHGKFERVSGSSLGGGTFWGLARMLLDCQTFDQVIDLT
HEGDNRNVDMLVGDIYGGSYENIGLDASVIAASFGKATMRKEYTRHQVST
WSLIKDRFRRATWGTIDLWLSFLHAVPGVGRMLKSLGIGNDVPWSPTLIT
HTGAQYRPQDIALSLLRMVSYNIGQIAYLNARLHNLDTIYFGGNFIRNHP
YTIGDISFAVDFWSGGNMKALFLKHDGYLGAIGALIGASSASPRKIFDES
SPLVPNPKHTEPALPEHHSVPNGQSTPIDNSALSNGTTSTDDSPQTSKTK
LGDESKGEHMSSVRNEADADDNQGTRTENVKSSRRRRKKNSKGHTSMPVV
PSEILNGSFEGADEHESGGEWTTVTRIRRKAPAKDKAI*

spliced messenger RNA

>Ggra4405.t1 ID=Ggra4405.t1|Name=Ggra4405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00000898_pilon:330483..332249+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGTCACCGACGCAATCACACTCCACGCAGCCGGAGCTCGTCAA
AGTTGACACCGCGCTCACTGTGCTCGCACAGATCAACCTGCTTGAGGAGT
CCAATGCGCTCGCTCTCGACATTGGTGGATCCCTGGCCAAACTCATCTAC
CTGCAGCCGCATACGCACCACAAAACAAATCCACCCCCACTCAAGATTCA
CCAGGTCGATGGCACAGTTGCCAATGCTCTGTCGGTGCATGTGCCCGTTT
TAAACGGCACGCTGCACTTCTTTGCGTTCGAGTCCAGAAACATTCATCAA
ATGCTGCGTTTCATTCGACGTAACTGGCCGCACCACATCCGTAGGTATAT
ACGCGCCACTGGTGGTGGTTCTTACAAGTATGAGACCGCATTTCGCGAAC
AGATTGGCGTGTTGCTCACTAGACTGGATGAGATGACCTCAACAGTAGCC
GGTCTCAACTTTCTGCTTTGCAATGTAGAGAATGAAGTCTATATTTATTC
ACAACCTCAGCCCGACCGCCCTCCGTTGCCGCAGGACATTCCGCAGAGCA
CCCGTACTTTTGCGCCTGTCAATAAGAACCCGTTTCCTTATCTGCTTGTT
AACATTGGCAGTGGCGTTTCCATTGTAAAGGTAACAGACCATGGAAAATT
CGAGCGCGTCAGCGGAAGTTCGCTCGGCGGCGGCACTTTCTGGGGGCTGG
CCAGAATGTTACTTGATTGCCAAACCTTTGATCAGGTCATCGACCTTACC
CACGAGGGAGACAATCGCAACGTTGACATGCTTGTCGGTGACATTTACGG
CGGCTCCTACGAAAACATTGGTCTTGATGCTAGTGTGATCGCTGCCTCGT
TTGGAAAAGCCACAATGCGAAAGGAGTACACTCGCCACCAAGTCAGCACC
TGGTCCCTTATCAAAGACCGCTTCCGCAGAGCCACTTGGGGTACAATTGA
CCTTTGGCTGTCCTTCCTCCACGCAGTCCCAGGAGTAGGCCGCATGTTGA
AGTCATTGGGCATTGGTAACGACGTGCCTTGGTCTCCCACTCTCATAACA
CATACCGGAGCGCAGTACAGACCGCAAGATATTGCCTTGTCCCTGCTGAG
AATGGTGTCGTACAACATCGGCCAGATTGCTTATCTCAATGCTCGCCTTC
ATAACCTTGATACCATATACTTTGGTGGCAATTTTATACGCAACCATCCA
TATACCATTGGCGACATATCATTTGCCGTTGATTTCTGGTCTGGTGGTAA
TATGAAAGCGTTGTTCCTGAAGCATGATGGGTATCTAGGAGCTATCGGAG
CGCTCATCGGCGCTTCAAGTGCATCTCCTCGAAAAATCTTTGATGAGTCA
TCACCACTCGTCCCAAACCCGAAACATACAGAACCAGCTCTCCCTGAACA
TCATTCAGTTCCTAACGGCCAATCAACACCCATCGACAATTCCGCACTTT
CGAACGGCACTACTTCCACAGATGACAGCCCACAGACATCCAAAACAAAG
CTGGGAGACGAATCCAAGGGAGAGCACATGTCATCTGTACGGAATGAAGC
AGATGCAGATGATAATCAAGGGACTCGAACTGAAAACGTCAAGTCCTCCC
GGAGAAGGCGTAAGAAGAACTCGAAAGGGCACACAAGTATGCCGGTTGTG
CCTTCTGAGATTTTGAACGGCAGCTTCGAGGGTGCTGACGAACACGAGTC
CGGGGGAGAGTGGACAACTGTGACTAGAATACGCCGGAAGGCTCCCGCCA
AAGACAAGGCCATTTGA

protein sequence of Ggra4405.t1

>Ggra4405.t1 ID=Ggra4405.t1|Name=Ggra4405.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=589bp
MPQSPTQSHSTQPELVKVDTALTVLAQINLLEESNALALDIGGSLAKLIY
LQPHTHHKTNPPPLKIHQVDGTVANALSVHVPVLNGTLHFFAFESRNIHQ
MLRFIRRNWPHHIRRYIRATGGGSYKYETAFREQIGVLLTRLDEMTSTVA
GLNFLLCNVENEVYIYSQPQPDRPPLPQDIPQSTRTFAPVNKNPFPYLLV
NIGSGVSIVKVTDHGKFERVSGSSLGGGTFWGLARMLLDCQTFDQVIDLT
HEGDNRNVDMLVGDIYGGSYENIGLDASVIAASFGKATMRKEYTRHQVST
WSLIKDRFRRATWGTIDLWLSFLHAVPGVGRMLKSLGIGNDVPWSPTLIT
HTGAQYRPQDIALSLLRMVSYNIGQIAYLNARLHNLDTIYFGGNFIRNHP
YTIGDISFAVDFWSGGNMKALFLKHDGYLGAIGALIGASSASPRKIFDES
SPLVPNPKHTEPALPEHHSVPNGQSTPIDNSALSNGTTSTDDSPQTSKTK
LGDESKGEHMSSVRNEADADDNQGTRTENVKSSRRRRKKNSKGHTSMPVV
PSEILNGSFEGADEHESGGEWTTVTRIRRKAPAKDKAI*

mRNA from alignment at tig00000898_pilon:330483..332249+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4405.t1 ID=Ggra4405.t1|Name=Ggra4405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00000898_pilon:330483..332249+ (Gracilaria gracilis GNS1m male)
ATGCCGCAGTCACCGACGCAATCACACTCCACGCAGCCGGAGCTCGTCAA
AGTTGACACCGCGCTCACTGTGCTCGCACAGATCAACCTGCTTGAGGAGT
CCAATGCGCTCGCTCTCGACATTGGTGGATCCCTGGCCAAACTCATCTAC
CTGCAGCCGCATACGCACCACAAAACAAATCCACCCCCACTCAAGATTCA
CCAGGTCGATGGCACAGTTGCCAATGCTCTGTCGGTGCATGTGCCCGTTT
TAAACGGCACGCTGCACTTCTTTGCGTTCGAGTCCAGAAACATTCATCAA
ATGCTGCGTTTCATTCGACGTAACTGGCCGCACCACATCCGTAGGTATAT
ACGCGCCACTGGTGGTGGTTCTTACAAGTATGAGACCGCATTTCGCGAAC
AGATTGGCGTGTTGCTCACTAGACTGGATGAGATGACCTCAACAGTAGCC
GGTCTCAACTTTCTGCTTTGCAATGTAGAGAATGAAGTCTATATTTATTC
ACAACCTCAGCCCGACCGCCCTCCGTTGCCGCAGGACATTCCGCAGAGCA
CCCGTACTTTTGCGCCTGTCAATAAGAACCCGTTTCCTTATCTGCTTGTT
AACATTGGCAGTGGCGTTTCCATTGTAAAGGTAACAGACCATGGAAAATT
CGAGCGCGTCAGCGGAAGTTCGCTCGGCGGCGGCACTTTCTGGGGGCTGG
CCAGAATGTTACTTGATTGCCAAACCTTTGATCAGGTCATCGACCTTACC
CACGAGGGAGACAATCGCAACGTTGACATGCTTGTCGGTGACATTTACGG
CGGCTCCTACGAAAACATTGGTCTTGATGCTAGTGTGATCGCTGCCTCGT
TTGGAAAAGCCACAATGCGAAAGGAGTACACTCGCCACCAAGTCAGCACC
TGGTCCCTTATCAAAGACCGCTTCCGCAGAGCCACTTGGGGTACAATTGA
CCTTTGGCTGTCCTTCCTCCACGCAGTCCCAGGAGTAGGCCGCATGTTGA
AGTCATTGGGCATTGGTAACGACGTGCCTTGGTCTCCCACTCTCATAACA
CATACCGGAGCGCAGTACAGACCGCAAGATATTGCCTTGTCCCTGCTGAG
AATGGTGTCGTACAACATCGGCCAGATTGCTTATCTCAATGCTCGCCTTC
ATAACCTTGATACCATATACTTTGGTGGCAATTTTATACGCAACCATCCA
TATACCATTGGCGACATATCATTTGCCGTTGATTTCTGGTCTGGTGGTAA
TATGAAAGCGTTGTTCCTGAAGCATGATGGGTATCTAGGAGCTATCGGAG
CGCTCATCGGCGCTTCAAGTGCATCTCCTCGAAAAATCTTTGATGAGTCA
TCACCACTCGTCCCAAACCCGAAACATACAGAACCAGCTCTCCCTGAACA
TCATTCAGTTCCTAACGGCCAATCAACACCCATCGACAATTCCGCACTTT
CGAACGGCACTACTTCCACAGATGACAGCCCACAGACATCCAAAACAAAG
CTGGGAGACGAATCCAAGGGAGAGCACATGTCATCTGTACGGAATGAAGC
AGATGCAGATGATAATCAAGGGACTCGAACTGAAAACGTCAAGTCCTCCC
GGAGAAGGCGTAAGAAGAACTCGAAAGGGCACACAAGTATGCCGGTTGTG
CCTTCTGAGATTTTGAACGGCAGCTTCGAGGGTGCTGACGAACACGAGTC
CGGGGGAGAGTGGACAACTGTGACTAGAATACGCCGGAAGGCTCCCGCCA
AAGACAAGGCCATTTGA

Coding sequence (CDS) from alignment at tig00000898_pilon:330483..332249+

>Ggra4405.t1 ID=Ggra4405.t1|Name=Ggra4405.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1767bp|location=Sequence derived from alignment at tig00000898_pilon:330483..332249+ (Gracilaria gracilis GNS1m male)
ATGCCGCAGTCACCGACGCAATCACACTCCACGCAGCCGGAGCTCGTCAA
AGTTGACACCGCGCTCACTGTGCTCGCACAGATCAACCTGCTTGAGGAGT
CCAATGCGCTCGCTCTCGACATTGGTGGATCCCTGGCCAAACTCATCTAC
CTGCAGCCGCATACGCACCACAAAACAAATCCACCCCCACTCAAGATTCA
CCAGGTCGATGGCACAGTTGCCAATGCTCTGTCGGTGCATGTGCCCGTTT
TAAACGGCACGCTGCACTTCTTTGCGTTCGAGTCCAGAAACATTCATCAA
ATGCTGCGTTTCATTCGACGTAACTGGCCGCACCACATCCGTAGGTATAT
ACGCGCCACTGGTGGTGGTTCTTACAAGTATGAGACCGCATTTCGCGAAC
AGATTGGCGTGTTGCTCACTAGACTGGATGAGATGACCTCAACAGTAGCC
GGTCTCAACTTTCTGCTTTGCAATGTAGAGAATGAAGTCTATATTTATTC
ACAACCTCAGCCCGACCGCCCTCCGTTGCCGCAGGACATTCCGCAGAGCA
CCCGTACTTTTGCGCCTGTCAATAAGAACCCGTTTCCTTATCTGCTTGTT
AACATTGGCAGTGGCGTTTCCATTGTAAAGGTAACAGACCATGGAAAATT
CGAGCGCGTCAGCGGAAGTTCGCTCGGCGGCGGCACTTTCTGGGGGCTGG
CCAGAATGTTACTTGATTGCCAAACCTTTGATCAGGTCATCGACCTTACC
CACGAGGGAGACAATCGCAACGTTGACATGCTTGTCGGTGACATTTACGG
CGGCTCCTACGAAAACATTGGTCTTGATGCTAGTGTGATCGCTGCCTCGT
TTGGAAAAGCCACAATGCGAAAGGAGTACACTCGCCACCAAGTCAGCACC
TGGTCCCTTATCAAAGACCGCTTCCGCAGAGCCACTTGGGGTACAATTGA
CCTTTGGCTGTCCTTCCTCCACGCAGTCCCAGGAGTAGGCCGCATGTTGA
AGTCATTGGGCATTGGTAACGACGTGCCTTGGTCTCCCACTCTCATAACA
CATACCGGAGCGCAGTACAGACCGCAAGATATTGCCTTGTCCCTGCTGAG
AATGGTGTCGTACAACATCGGCCAGATTGCTTATCTCAATGCTCGCCTTC
ATAACCTTGATACCATATACTTTGGTGGCAATTTTATACGCAACCATCCA
TATACCATTGGCGACATATCATTTGCCGTTGATTTCTGGTCTGGTGGTAA
TATGAAAGCGTTGTTCCTGAAGCATGATGGGTATCTAGGAGCTATCGGAG
CGCTCATCGGCGCTTCAAGTGCATCTCCTCGAAAAATCTTTGATGAGTCA
TCACCACTCGTCCCAAACCCGAAACATACAGAACCAGCTCTCCCTGAACA
TCATTCAGTTCCTAACGGCCAATCAACACCCATCGACAATTCCGCACTTT
CGAACGGCACTACTTCCACAGATGACAGCCCACAGACATCCAAAACAAAG
CTGGGAGACGAATCCAAGGGAGAGCACATGTCATCTGTACGGAATGAAGC
AGATGCAGATGATAATCAAGGGACTCGAACTGAAAACGTCAAGTCCTCCC
GGAGAAGGCGTAAGAAGAACTCGAAAGGGCACACAAGTATGCCGGTTGTG
CCTTCTGAGATTTTGAACGGCAGCTTCGAGGGTGCTGACGAACACGAGTC
CGGGGGAGAGTGGACAACTGTGACTAGAATACGCCGGAAGGCTCCCGCCA
AAGACAAGGCCATTTGA