Ggra4399.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4399.t1
Unique NameGgra4399.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:235669..236884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4399Ggra4399Gracilaria gracilis GNS1m malegenetig00000898_pilon 235669..236884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4399.t1Ggra4399.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 235669..236884 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4399.t1.stop1Ggra4399.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 235669..235671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4399.t1.CDS1Ggra4399.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 235669..235908 -
Ggra4399.t1.CDS2Ggra4399.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 235994..236284 -
Ggra4399.t1.CDS3Ggra4399.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 236397..236672 -
Ggra4399.t1.CDS4Ggra4399.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000898_pilon 236852..236884 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4399.t1.exon1Ggra4399.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 235669..235908 -
Ggra4399.t1.exon2Ggra4399.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 235994..236284 -
Ggra4399.t1.exon3Ggra4399.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 236397..236672 -
Ggra4399.t1.exon4Ggra4399.t1.exon4Gracilaria gracilis GNS1m maleexontig00000898_pilon 236852..236884 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4399.t1.intron1Ggra4399.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 235909..235993 -
Ggra4399.t1.intron2Ggra4399.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 236285..236396 -
Ggra4399.t1.intron3Ggra4399.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000898_pilon 236673..236851 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4399.t1.start1Ggra4399.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 236882..236884 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4399.t1 ID=Ggra4399.t1|Name=Ggra4399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=280bp
MPQNTVLDFQSEYVKYYISLEFLHTNKGSGLFGASSASASEDSQLVVQAA
AYVLQPQCTDSDIQRFLGEFLSQRKNKKETKQRVGSFIAIGMNRAQDAIR
DKLYNYFAEIRSHVSSEDDRRTAAKNLLDNEHILMEEAYENAWYNAWLGG
QSAALSTALSARDMLQEMFPNANLSEAIPARQIGDTLQVNMYTIGFMDLK
LLKVLEGIGKIKRRGYRLSHEPYWAKFTILIQEKYAKTADRYGLSEDIYG
GPSLKRGRFKVVSELDSNATNALKTQMVV*
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spliced messenger RNA

>Ggra4399.t1 ID=Ggra4399.t1|Name=Ggra4399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000898_pilon:235669..236884- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGAACACAGTCCTGGACTTTCAATCGGAGTACGTGAAATACTA
CATTAGCCTGGAATTCTTACATACCAACAAGGGTTCAGGTCTCTTTGGGG
CTTCGAGTGCAAGTGCTTCGGAAGACTCACAGCTGGTGGTTCAAGCGGCT
GCGTATGTCTTACAACCTCAATGCACCGATTCGGATATCCAGAGGTTCTT
GGGGGAGTTCTTGTCACAGAGAAAGAACAAGAAGGAGACGAAGCAAAGAG
TTGGTTCATTCATCGCTATTGGAATGAATAGAGCACAAGACGCAATTCGG
GACAAACTGTATAACTATTTTGCAGAGATTAGGTCTCACGTGAGCAGCGA
AGACGATAGGAGAACGGCAGCGAAGAATTTGCTTGACAATGAACATATTT
TGATGGAGGAAGCCTATGAGAATGCTTGGTACAATGCGTGGCTAGGAGGG
CAATCTGCGGCGTTGAGCACTGCCCTATCGGCAAGGGATATGCTGCAAGA
GATGTTTCCAAACGCTAATTTGTCGGAAGCTATTCCTGCTCGGCAGATTG
GAGATACGCTACAGGTCAATATGTACACGATCGGCTTTATGGATTTAAAG
TTATTGAAGGTTCTTGAAGGGATTGGAAAGATCAAACGCAGGGGATATCG
TTTGTCGCACGAGCCCTACTGGGCAAAGTTTACAATCTTAATTCAGGAGA
AGTATGCGAAGACTGCTGACCGGTATGGTCTATCTGAAGATATTTATGGT
GGGCCATCATTGAAAAGGGGACGATTCAAGGTTGTTTCAGAACTTGATTC
GAACGCGACCAATGCTCTAAAGACCCAAATGGTGGTGTAG
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protein sequence of Ggra4399.t1

>Ggra4399.t1 ID=Ggra4399.t1|Name=Ggra4399.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=280bp
MPQNTVLDFQSEYVKYYISLEFLHTNKGSGLFGASSASASEDSQLVVQAA
AYVLQPQCTDSDIQRFLGEFLSQRKNKKETKQRVGSFIAIGMNRAQDAIR
DKLYNYFAEIRSHVSSEDDRRTAAKNLLDNEHILMEEAYENAWYNAWLGG
QSAALSTALSARDMLQEMFPNANLSEAIPARQIGDTLQVNMYTIGFMDLK
LLKVLEGIGKIKRRGYRLSHEPYWAKFTILIQEKYAKTADRYGLSEDIYG
GPSLKRGRFKVVSELDSNATNALKTQMVV*
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mRNA from alignment at tig00000898_pilon:235669..236884-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4399.t1 ID=Ggra4399.t1|Name=Ggra4399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1216bp|location=Sequence derived from alignment at tig00000898_pilon:235669..236884- (Gracilaria gracilis GNS1m male)
ATGCCGCAGAACACAGTCCTGGACTTTCAATCGGTAAGTTATGCTTCTTC
TAATCTTTATTATCTTGATTCTAATATCTCTTATCTTTCTACGAACAAAT
TCAAAGAAGTCGGAAGCAGCACGGGTAGGTATGGGCATCCAGTGGTTGCC
TTACAAAAAGAATCACGTGTACGGTTCTACTCTAATCTGACACCAACATT
CTCTGATATTAGGAGTACGTGAAATACTACATTAGCCTGGAATTCTTACA
TACCAACAAGGGTTCAGGTCTCTTTGGGGCTTCGAGTGCAAGTGCTTCGG
AAGACTCACAGCTGGTGGTTCAAGCGGCTGCGTATGTCTTACAACCTCAA
TGCACCGATTCGGATATCCAGAGGTTCTTGGGGGAGTTCTTGTCACAGAG
AAAGAACAAGAAGGAGACGAAGCAAAGAGTTGGTTCATTCATCGCTATTG
GAATGAATAGAGCACAAGACGCAATTCGGGACAAACTGGTGAGTTAGTCC
GTTTAATTCTACATGGCAATATCTACAACCTCCGGTCACTGACAGTTTTG
TATGTGACATTGCAAAGGTTGACTCTTTTTTGGGCACTATTGTGAAATAG
TATAACTATTTTGCAGAGATTAGGTCTCACGTGAGCAGCGAAGACGATAG
GAGAACGGCAGCGAAGAATTTGCTTGACAATGAACATATTTTGATGGAGG
AAGCCTATGAGAATGCTTGGTACAATGCGTGGCTAGGAGGGCAATCTGCG
GCGTTGAGCACTGCCCTATCGGCAAGGGATATGCTGCAAGAGATGTTTCC
AAACGCTAATTTGTCGGAAGCTATTCCTGCTCGGCAGATTGGAGATACGC
TACAGGTCAATATGTACACGATCGGCTTTATGGATTTAAAGGTAGGTTTT
CGCGGTTACAAAGGGCAAGAAATGGGCTTCTAACTGTTTTAACTCCTGGC
TTCGCTTTCTTATTGTTTCCTAATAGTTATTGAAGGTTCTTGAAGGGATT
GGAAAGATCAAACGCAGGGGATATCGTTTGTCGCACGAGCCCTACTGGGC
AAAGTTTACAATCTTAATTCAGGAGAAGTATGCGAAGACTGCTGACCGGT
ATGGTCTATCTGAAGATATTTATGGTGGGCCATCATTGAAAAGGGGACGA
TTCAAGGTTGTTTCAGAACTTGATTCGAACGCGACCAATGCTCTAAAGAC
CCAAATGGTGGTGTAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:235669..236884-

>Ggra4399.t1 ID=Ggra4399.t1|Name=Ggra4399.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000898_pilon:235669..236884- (Gracilaria gracilis GNS1m male)
ATGCCGCAGAACACAGTCCTGGACTTTCAATCGGAGTACGTGAAATACTA
CATTAGCCTGGAATTCTTACATACCAACAAGGGTTCAGGTCTCTTTGGGG
CTTCGAGTGCAAGTGCTTCGGAAGACTCACAGCTGGTGGTTCAAGCGGCT
GCGTATGTCTTACAACCTCAATGCACCGATTCGGATATCCAGAGGTTCTT
GGGGGAGTTCTTGTCACAGAGAAAGAACAAGAAGGAGACGAAGCAAAGAG
TTGGTTCATTCATCGCTATTGGAATGAATAGAGCACAAGACGCAATTCGG
GACAAACTGTATAACTATTTTGCAGAGATTAGGTCTCACGTGAGCAGCGA
AGACGATAGGAGAACGGCAGCGAAGAATTTGCTTGACAATGAACATATTT
TGATGGAGGAAGCCTATGAGAATGCTTGGTACAATGCGTGGCTAGGAGGG
CAATCTGCGGCGTTGAGCACTGCCCTATCGGCAAGGGATATGCTGCAAGA
GATGTTTCCAAACGCTAATTTGTCGGAAGCTATTCCTGCTCGGCAGATTG
GAGATACGCTACAGGTCAATATGTACACGATCGGCTTTATGGATTTAAAG
TTATTGAAGGTTCTTGAAGGGATTGGAAAGATCAAACGCAGGGGATATCG
TTTGTCGCACGAGCCCTACTGGGCAAAGTTTACAATCTTAATTCAGGAGA
AGTATGCGAAGACTGCTGACCGGTATGGTCTATCTGAAGATATTTATGGT
GGGCCATCATTGAAAAGGGGACGATTCAAGGTTGTTTCAGAACTTGATTC
GAACGCGACCAATGCTCTAAAGACCCAAATGGTGGTGTAG
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