Ggra4396.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4396.t1
Unique NameGgra4396.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:174554..176234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173027.Mic7113_4876
Preferred namesmpB
PFAMsSmpB
Max annot lvl1117|Cyanobacteria
KEGG koko:K03664
Evalue2.71e-46
EggNOG OGsCOG0691@1|root,COG0691@2|Bacteria,1G542@1117|Cyanobacteria,1HAV9@1150|Oscillatoriales
Descriptionthe 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
COG categoryO
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4396Ggra4396Gracilaria gracilis GNS1m malegenetig00000898_pilon 174554..176234 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4396.t1.stop1Ggra4396.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 174554..174556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4396.t1.CDS1Ggra4396.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 174554..174559 -
Ggra4396.t1.CDS2Ggra4396.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 174704..174931 -
Ggra4396.t1.CDS3Ggra4396.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 175118..175128 -
Ggra4396.t1.CDS4Ggra4396.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000898_pilon 175414..175543 -
Ggra4396.t1.CDS5Ggra4396.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000898_pilon 175660..175682 -
Ggra4396.t1.CDS6Ggra4396.t1.CDS6Gracilaria gracilis GNS1m maleCDStig00000898_pilon 175757..176234 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4396.t1.exon1Ggra4396.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 174554..174559 -
Ggra4396.t1.exon2Ggra4396.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 174704..174931 -
Ggra4396.t1.exon3Ggra4396.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 175118..175128 -
Ggra4396.t1.exon4Ggra4396.t1.exon4Gracilaria gracilis GNS1m maleexontig00000898_pilon 175414..175543 -
Ggra4396.t1.exon5Ggra4396.t1.exon5Gracilaria gracilis GNS1m maleexontig00000898_pilon 175660..175682 -
Ggra4396.t1.exon6Ggra4396.t1.exon6Gracilaria gracilis GNS1m maleexontig00000898_pilon 175757..176234 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4396.t1.intron1Ggra4396.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 174560..174703 -
Ggra4396.t1.intron2Ggra4396.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 174932..175117 -
Ggra4396.t1.intron3Ggra4396.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000898_pilon 175129..175413 -
Ggra4396.t1.intron4Ggra4396.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000898_pilon 175544..175659 -
Ggra4396.t1.intron5Ggra4396.t1.intron5Gracilaria gracilis GNS1m maleintrontig00000898_pilon 175683..175756 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4396.t1.start1Ggra4396.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 176232..176234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4396.t1Ggra4396.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 174554..176234 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4396.t1 ID=Ggra4396.t1|Name=Ggra4396.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MAKSKRPRNYSPTVDNRIARSRYEFLEKHECGVELLGTEVKSVRLGQANI
RDSYAVVRNGELYIKNLRISHYPFATAKFNHEPLREKKLLLHKREIRKLK
SKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKNERDRRQDIKKRDDQREM
RRIEKVVVRETSRVGIAELSMLFERTCSGDTIDSVVYMETDGSVPFASSR
CGRVSSNVCTRYIVDKGISLVLSKHLLSYYDKRMTELSYKGSSNDGRRSS
FMSSTPTAPVVDSLGKLLLTVHNKHGDMVDSEASSNFSGIQ*
back to top

spliced messenger RNA

>Ggra4396.t1 ID=Ggra4396.t1|Name=Ggra4396.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000898_pilon:174554..176234- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAGTCCAAGCGTCCCAGGAACTACAGCCCCACCGTCGACAATCG
CATCGCAAGATCCAGATACGAGTTCCTTGAGAAGCACGAATGTGGAGTAG
AACTACTGGGCACCGAAGTCAAGTCCGTCCGATTGGGACAGGCCAATATT
CGTGACAGCTATGCTGTTGTTCGAAACGGCGAGTTGTACATAAAGAATTT
GCGAATATCCCACTACCCGTTTGCCACCGCAAAGTTCAACCATGAGCCGC
TACGTGAGAAGAAACTACTGTTACACAAGCGTGAAATTCGAAAACTCAAA
AGCAAGGTGGCAGAGAAAGGGCTTACATTGGTACCCACTCGTTTATACTT
CACTAATGGATTCGTCAAAGTTGAAATCGCATTGGCAAAAGGCAAAAATG
AAAGAGATCGTCGTCAAGACATCAAAAAGAGAGATGATCAGCGCGAAATG
AGACGTATTGAAAAGGTTGTAGTTCGGGAGACAAGCAGAGTGGGCATTGC
GGAGCTCTCCATGCTATTCGAGCGCACGTGCAGCGGTGATACCATCGACA
GTGTTGTGTACATGGAAACGGATGGATCGGTGCCCTTCGCTTCTAGCCGT
TGCGGAAGAGTTTCGAGTAATGTTTGCACAAGATACATCGTGGATAAGGG
GATCTCGCTTGTTCTCTCCAAACATTTGCTTTCATATTACGACAAGAGGA
TGACAGAGCTATCTTACAAGGGTTCTTCGAATGACGGCCGTAGGTCCAGT
TTCATGAGTTCCACACCTACAGCTCCCGTGGTAGACTCTCTAGGCAAGTT
ATTGCTCACGGTGCACAATAAACATGGCGATATGGTGGACTCCGAAGCCT
CTTCCAACTTCTCTGGTATTCAATGA
back to top

protein sequence of Ggra4396.t1

>Ggra4396.t1 ID=Ggra4396.t1|Name=Ggra4396.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MAKSKRPRNYSPTVDNRIARSRYEFLEKHECGVELLGTEVKSVRLGQANI
RDSYAVVRNGELYIKNLRISHYPFATAKFNHEPLREKKLLLHKREIRKLK
SKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKNERDRRQDIKKRDDQREM
RRIEKVVVRETSRVGIAELSMLFERTCSGDTIDSVVYMETDGSVPFASSR
CGRVSSNVCTRYIVDKGISLVLSKHLLSYYDKRMTELSYKGSSNDGRRSS
FMSSTPTAPVVDSLGKLLLTVHNKHGDMVDSEASSNFSGIQ*
back to top

mRNA from alignment at tig00000898_pilon:174554..176234-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4396.t1 ID=Ggra4396.t1|Name=Ggra4396.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1681bp|location=Sequence derived from alignment at tig00000898_pilon:174554..176234- (Gracilaria gracilis GNS1m male)
ATGGCCAAGTCCAAGCGTCCCAGGAACTACAGCCCCACCGTCGACAATCG
CATCGCAAGATCCAGATACGAGTTCCTTGAGAAGCACGAATGTGGAGTAG
AACTACTGGGCACCGAAGTCAAGTCCGTCCGATTGGGACAGGCCAATATT
CGTGACAGCTATGCTGTTGTTCGAAACGGCGAGTTGTACATAAAGAATTT
GCGAATATCCCACTACCCGTTTGCCACCGCAAAGTTCAACCATGAGCCGC
TACGTGAGAAGAAACTACTGTTACACAAGCGTGAAATTCGAAAACTCAAA
AGCAAGGTGGCAGAGAAAGGGCTTACATTGGTACCCACTCGTTTATACTT
CACTAATGGATTCGTCAAAGTTGAAATCGCATTGGCAAAAGGCAAAAATG
AAAGAGATCGTCGTCAAGACATCAAAAAGAGAGATGATCAGCGCGAAATG
AGACGTATTGAAAAGGTTGTAGTTCGGGGTATGTGAACATCAAATCCATG
AATCACCCATTGCCTCCATGTGTTCATCCGCATCGTATCTCTTCGGTACA
AGAGACAAGCAGAGTGGGCATTGCGGTAAATTTGCGCTTCGAAGCAACCA
TTGATCTATACATTCCGCGTGAAATATATGCTTGCATGGCAATTGTCGTA
CTATGCTTCCTGAACTTACGCTTCCGAGACATATTGCACAGGAGCTCTCC
ATGCTATTCGAGCGCACGTGCAGCGGTGATACCATCGACAGTGTTGTGTA
CATGGAAACGGATGGATCGGTGCCCTTCGCTTCTAGCCGTTGCGGAAGAG
TTTCGAGTAATGTTTGCACAAGTATGTATATCAGAGCAACAATTAGACAG
CACAGCATGAGTGTCACGAGTACCAAGAAAAGCCAAGGGGCAACTTCTGC
GCTTAAATCTTGGTCGTAGTCTTCCGCTCGCCATCCAATACAGAACCGGT
TTACACAAATACTTGTGAGAGTATCTTCATCAGAGGATGGTGCACTTCCA
TAGGAGACTGCTGCCATGTGTTAGAAGGCGAGAATGGAGCAATGTTGTAA
CGACTGCGGTAAGAGCCGCGGACGAGCCCGATGCTGACCATCTCCATCAC
TTGTAGGATACATCGTGGTAATGTTTTCGCGCTTCCTGTATCTGATATCT
CACGCGATTTTAGCCGGCGTCTAAACATCGAGAGGTGTTTGGGCTATAAT
GCACAATGACATCAACAGGGGGCAAGCGTTGAAAATGTTACGCAATTGCT
GATGAAGATTGGTCAGCGACGGTTGTTTATTTGGGTTGTTATTTTGCATT
AAGGATAAGGGGATCTCGCTTGTTCTCTCCAAACATTTGCTTTCATATTA
CGACAAGAGGATGACAGAGCTATCTTACAAGGGTTCTTCGAATGACGGCC
GTAGGTCCAGTTTCATGAGTTCCACACCTACAGCTCCCGTGGTAGACTCT
CTAGGCAAGTTATTGCTCACGGTGCACAATAAACATGGCGATATGGTGGA
CTCCGAAGCCTCTTCCAACTTCTCTGGTATTGTGAGTACAAACCGTAATG
AAGTTCCATCACACATTTCTAGCCCGGCTAGTCCCGTTGTGACATATCGT
CGTACCCATCCGCGATCTTGATACTGTACGTTGCCAAAGTTTGAAGCTGA
ACATAGTCTAACGCATCACGGATAGCAATGA
back to top

Coding sequence (CDS) from alignment at tig00000898_pilon:174554..176234-

>Ggra4396.t1 ID=Ggra4396.t1|Name=Ggra4396.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000898_pilon:174554..176234- (Gracilaria gracilis GNS1m male)
ATGGCCAAGTCCAAGCGTCCCAGGAACTACAGCCCCACCGTCGACAATCG
CATCGCAAGATCCAGATACGAGTTCCTTGAGAAGCACGAATGTGGAGTAG
AACTACTGGGCACCGAAGTCAAGTCCGTCCGATTGGGACAGGCCAATATT
CGTGACAGCTATGCTGTTGTTCGAAACGGCGAGTTGTACATAAAGAATTT
GCGAATATCCCACTACCCGTTTGCCACCGCAAAGTTCAACCATGAGCCGC
TACGTGAGAAGAAACTACTGTTACACAAGCGTGAAATTCGAAAACTCAAA
AGCAAGGTGGCAGAGAAAGGGCTTACATTGGTACCCACTCGTTTATACTT
CACTAATGGATTCGTCAAAGTTGAAATCGCATTGGCAAAAGGCAAAAATG
AAAGAGATCGTCGTCAAGACATCAAAAAGAGAGATGATCAGCGCGAAATG
AGACGTATTGAAAAGGTTGTAGTTCGGGAGACAAGCAGAGTGGGCATTGC
GGAGCTCTCCATGCTATTCGAGCGCACGTGCAGCGGTGATACCATCGACA
GTGTTGTGTACATGGAAACGGATGGATCGGTGCCCTTCGCTTCTAGCCGT
TGCGGAAGAGTTTCGAGTAATGTTTGCACAAGATACATCGTGGATAAGGG
GATCTCGCTTGTTCTCTCCAAACATTTGCTTTCATATTACGACAAGAGGA
TGACAGAGCTATCTTACAAGGGTTCTTCGAATGACGGCCGTAGGTCCAGT
TTCATGAGTTCCACACCTACAGCTCCCGTGGTAGACTCTCTAGGCAAGTT
ATTGCTCACGGTGCACAATAAACATGGCGATATGGTGGACTCCGAAGCCT
CTTCCAACTTCTCTGGTATTCAATGA
back to top