Ggra4386.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4386.t1
Unique NameGgra4386.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length542
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:142624..144249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707714.1
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04456,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
Evalue6.14e-65
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4386Ggra4386Gracilaria gracilis GNS1m malegenetig00000898_pilon 142624..144249 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4386.t1.start1Ggra4386.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 142624..142626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4386.t1.CDS1Ggra4386.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 142624..144249 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4386.t1.exon1Ggra4386.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 142624..144249 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4386.t1.stop1Ggra4386.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 144247..144249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4386.t1Ggra4386.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 142624..144249 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4386.t1 ID=Ggra4386.t1|Name=Ggra4386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=542bp
MFAPEQRVSSLMSIKPDDTADQPGVTLLRRLPDVLSGPVRIRRRRRILRE
WTLATASLRGTALIILADGTSRVISAVDVHHVSHSYSSRAVATVTVRSCT
AAALHLRFEHNVAQWLDALYAIVSAPSPSLSDFQILSPIGKGGGGEVYLV
TQRHAVEPTARARPLALKVVQKHDAFHSDGSLRHVLDERLVMELVRGFPF
VVNLTHAFQTDKALYMLSDFCQGGNLRTVLKRSHASRLSEQDARRYMAQI
VLAIEHVHSLNVIYRDIKPENVLLDANGNVRLCDFGLSKMLSTGRFGRTK
SFCGSTSYMSPQIVSSKWYGIGTDLWSLGALFYRMLVGRAPFDDHSSGHG
ARNDASHIEKRIQLDDVTFPSFLSDAAVEMLSGLLKKNEEQRMNLQDLKE
ALFFEGVDWDKVLEDGYQSAGALQQSGATQQSYDLKNFDTHRLQSHGIRL
EDEALHERKGKKGGGAEAFGTGLRSRKASRLAMRIRQRSDMHKVQNGTAI
VGFGYSYASASDVSTIQSDSSGSRCSGSASTVGCVARSHAA*
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spliced messenger RNA

>Ggra4386.t1 ID=Ggra4386.t1|Name=Ggra4386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00000898_pilon:142624..144249+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCGCCGGAACAGCGCGTGTCATCGCTCATGTCCATCAAGCCGGA
CGACACGGCCGACCAGCCGGGAGTCACTCTGCTGCGTCGCTTACCAGACG
TGCTATCCGGACCGGTTCGAATCCGTCGCCGCCGTCGAATCCTGCGCGAG
TGGACACTGGCCACCGCCAGTCTACGCGGCACCGCGCTCATCATTCTGGC
GGACGGAACCAGCCGCGTCATCAGTGCCGTGGACGTGCATCACGTATCGC
ACTCGTACTCATCGCGCGCCGTCGCCACCGTCACCGTGCGCTCCTGCACC
GCCGCCGCGCTGCACCTGCGCTTCGAGCACAACGTGGCGCAATGGCTCGA
CGCGCTGTACGCCATTGTCAGCGCGCCGTCGCCGTCGCTGTCCGACTTTC
AAATCCTGTCGCCGATTGGCAAGGGCGGCGGCGGCGAGGTGTACCTCGTC
ACCCAGCGCCATGCCGTGGAACCCACTGCGCGCGCGCGCCCTCTGGCGCT
CAAGGTCGTGCAGAAGCATGACGCCTTCCATTCCGACGGCTCGCTGCGCC
ACGTGCTGGACGAGCGACTGGTCATGGAACTGGTGCGCGGCTTTCCGTTC
GTGGTCAATCTCACCCACGCCTTCCAGACCGACAAGGCGTTGTACATGCT
GTCTGACTTTTGTCAGGGCGGCAATTTGAGGACTGTGCTGAAAAGGTCGC
ACGCTTCTCGCTTGTCCGAACAGGACGCGCGTCGGTACATGGCGCAGATT
GTGCTGGCTATCGAGCACGTTCACTCTCTCAATGTGATTTATCGCGATAT
CAAGCCAGAAAACGTGCTGCTGGACGCGAACGGCAACGTGAGGTTGTGCG
ACTTTGGCTTGAGCAAGATGTTGAGCACGGGCCGATTTGGGCGTACCAAG
AGTTTCTGCGGAAGCACCTCGTACATGTCGCCGCAGATTGTGAGTTCAAA
GTGGTACGGAATCGGCACAGACTTGTGGTCTCTGGGCGCGTTGTTCTATC
GCATGCTTGTTGGTCGCGCTCCGTTTGACGATCACTCTAGTGGCCATGGC
GCACGAAATGATGCCTCGCACATTGAGAAGCGAATTCAGTTGGACGACGT
TACTTTTCCATCGTTCCTTTCTGATGCGGCGGTGGAGATGCTGTCCGGGC
TGCTCAAGAAGAATGAAGAGCAACGCATGAACCTGCAGGACCTCAAGGAG
GCGCTGTTCTTCGAAGGGGTGGATTGGGACAAGGTGCTGGAAGATGGCTA
TCAAAGTGCGGGCGCGCTGCAGCAGAGTGGCGCTACGCAACAAAGCTACG
ATCTCAAAAATTTTGATACGCATCGGTTGCAATCGCATGGAATTCGATTG
GAGGATGAGGCACTGCATGAGCGGAAGGGCAAGAAGGGAGGCGGCGCTGA
GGCGTTTGGCACTGGCTTGAGAAGCAGGAAGGCTTCGAGACTTGCGATGC
GTATCCGACAACGAAGTGATATGCACAAGGTGCAGAACGGGACGGCGATT
GTCGGGTTCGGCTACTCGTACGCTTCTGCCTCGGATGTGAGCACGATTCA
ATCGGATAGCAGTGGCAGCAGATGCAGCGGCAGCGCGAGCACAGTTGGGT
GCGTTGCGAGATCGCACGCTGCATGA
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protein sequence of Ggra4386.t1

>Ggra4386.t1 ID=Ggra4386.t1|Name=Ggra4386.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=542bp
MFAPEQRVSSLMSIKPDDTADQPGVTLLRRLPDVLSGPVRIRRRRRILRE
WTLATASLRGTALIILADGTSRVISAVDVHHVSHSYSSRAVATVTVRSCT
AAALHLRFEHNVAQWLDALYAIVSAPSPSLSDFQILSPIGKGGGGEVYLV
TQRHAVEPTARARPLALKVVQKHDAFHSDGSLRHVLDERLVMELVRGFPF
VVNLTHAFQTDKALYMLSDFCQGGNLRTVLKRSHASRLSEQDARRYMAQI
VLAIEHVHSLNVIYRDIKPENVLLDANGNVRLCDFGLSKMLSTGRFGRTK
SFCGSTSYMSPQIVSSKWYGIGTDLWSLGALFYRMLVGRAPFDDHSSGHG
ARNDASHIEKRIQLDDVTFPSFLSDAAVEMLSGLLKKNEEQRMNLQDLKE
ALFFEGVDWDKVLEDGYQSAGALQQSGATQQSYDLKNFDTHRLQSHGIRL
EDEALHERKGKKGGGAEAFGTGLRSRKASRLAMRIRQRSDMHKVQNGTAI
VGFGYSYASASDVSTIQSDSSGSRCSGSASTVGCVARSHAA*
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mRNA from alignment at tig00000898_pilon:142624..144249+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4386.t1 ID=Ggra4386.t1|Name=Ggra4386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00000898_pilon:142624..144249+ (Gracilaria gracilis GNS1m male)
ATGTTCGCGCCGGAACAGCGCGTGTCATCGCTCATGTCCATCAAGCCGGA
CGACACGGCCGACCAGCCGGGAGTCACTCTGCTGCGTCGCTTACCAGACG
TGCTATCCGGACCGGTTCGAATCCGTCGCCGCCGTCGAATCCTGCGCGAG
TGGACACTGGCCACCGCCAGTCTACGCGGCACCGCGCTCATCATTCTGGC
GGACGGAACCAGCCGCGTCATCAGTGCCGTGGACGTGCATCACGTATCGC
ACTCGTACTCATCGCGCGCCGTCGCCACCGTCACCGTGCGCTCCTGCACC
GCCGCCGCGCTGCACCTGCGCTTCGAGCACAACGTGGCGCAATGGCTCGA
CGCGCTGTACGCCATTGTCAGCGCGCCGTCGCCGTCGCTGTCCGACTTTC
AAATCCTGTCGCCGATTGGCAAGGGCGGCGGCGGCGAGGTGTACCTCGTC
ACCCAGCGCCATGCCGTGGAACCCACTGCGCGCGCGCGCCCTCTGGCGCT
CAAGGTCGTGCAGAAGCATGACGCCTTCCATTCCGACGGCTCGCTGCGCC
ACGTGCTGGACGAGCGACTGGTCATGGAACTGGTGCGCGGCTTTCCGTTC
GTGGTCAATCTCACCCACGCCTTCCAGACCGACAAGGCGTTGTACATGCT
GTCTGACTTTTGTCAGGGCGGCAATTTGAGGACTGTGCTGAAAAGGTCGC
ACGCTTCTCGCTTGTCCGAACAGGACGCGCGTCGGTACATGGCGCAGATT
GTGCTGGCTATCGAGCACGTTCACTCTCTCAATGTGATTTATCGCGATAT
CAAGCCAGAAAACGTGCTGCTGGACGCGAACGGCAACGTGAGGTTGTGCG
ACTTTGGCTTGAGCAAGATGTTGAGCACGGGCCGATTTGGGCGTACCAAG
AGTTTCTGCGGAAGCACCTCGTACATGTCGCCGCAGATTGTGAGTTCAAA
GTGGTACGGAATCGGCACAGACTTGTGGTCTCTGGGCGCGTTGTTCTATC
GCATGCTTGTTGGTCGCGCTCCGTTTGACGATCACTCTAGTGGCCATGGC
GCACGAAATGATGCCTCGCACATTGAGAAGCGAATTCAGTTGGACGACGT
TACTTTTCCATCGTTCCTTTCTGATGCGGCGGTGGAGATGCTGTCCGGGC
TGCTCAAGAAGAATGAAGAGCAACGCATGAACCTGCAGGACCTCAAGGAG
GCGCTGTTCTTCGAAGGGGTGGATTGGGACAAGGTGCTGGAAGATGGCTA
TCAAAGTGCGGGCGCGCTGCAGCAGAGTGGCGCTACGCAACAAAGCTACG
ATCTCAAAAATTTTGATACGCATCGGTTGCAATCGCATGGAATTCGATTG
GAGGATGAGGCACTGCATGAGCGGAAGGGCAAGAAGGGAGGCGGCGCTGA
GGCGTTTGGCACTGGCTTGAGAAGCAGGAAGGCTTCGAGACTTGCGATGC
GTATCCGACAACGAAGTGATATGCACAAGGTGCAGAACGGGACGGCGATT
GTCGGGTTCGGCTACTCGTACGCTTCTGCCTCGGATGTGAGCACGATTCA
ATCGGATAGCAGTGGCAGCAGATGCAGCGGCAGCGCGAGCACAGTTGGGT
GCGTTGCGAGATCGCACGCTGCATGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:142624..144249+

>Ggra4386.t1 ID=Ggra4386.t1|Name=Ggra4386.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1626bp|location=Sequence derived from alignment at tig00000898_pilon:142624..144249+ (Gracilaria gracilis GNS1m male)
ATGTTCGCGCCGGAACAGCGCGTGTCATCGCTCATGTCCATCAAGCCGGA
CGACACGGCCGACCAGCCGGGAGTCACTCTGCTGCGTCGCTTACCAGACG
TGCTATCCGGACCGGTTCGAATCCGTCGCCGCCGTCGAATCCTGCGCGAG
TGGACACTGGCCACCGCCAGTCTACGCGGCACCGCGCTCATCATTCTGGC
GGACGGAACCAGCCGCGTCATCAGTGCCGTGGACGTGCATCACGTATCGC
ACTCGTACTCATCGCGCGCCGTCGCCACCGTCACCGTGCGCTCCTGCACC
GCCGCCGCGCTGCACCTGCGCTTCGAGCACAACGTGGCGCAATGGCTCGA
CGCGCTGTACGCCATTGTCAGCGCGCCGTCGCCGTCGCTGTCCGACTTTC
AAATCCTGTCGCCGATTGGCAAGGGCGGCGGCGGCGAGGTGTACCTCGTC
ACCCAGCGCCATGCCGTGGAACCCACTGCGCGCGCGCGCCCTCTGGCGCT
CAAGGTCGTGCAGAAGCATGACGCCTTCCATTCCGACGGCTCGCTGCGCC
ACGTGCTGGACGAGCGACTGGTCATGGAACTGGTGCGCGGCTTTCCGTTC
GTGGTCAATCTCACCCACGCCTTCCAGACCGACAAGGCGTTGTACATGCT
GTCTGACTTTTGTCAGGGCGGCAATTTGAGGACTGTGCTGAAAAGGTCGC
ACGCTTCTCGCTTGTCCGAACAGGACGCGCGTCGGTACATGGCGCAGATT
GTGCTGGCTATCGAGCACGTTCACTCTCTCAATGTGATTTATCGCGATAT
CAAGCCAGAAAACGTGCTGCTGGACGCGAACGGCAACGTGAGGTTGTGCG
ACTTTGGCTTGAGCAAGATGTTGAGCACGGGCCGATTTGGGCGTACCAAG
AGTTTCTGCGGAAGCACCTCGTACATGTCGCCGCAGATTGTGAGTTCAAA
GTGGTACGGAATCGGCACAGACTTGTGGTCTCTGGGCGCGTTGTTCTATC
GCATGCTTGTTGGTCGCGCTCCGTTTGACGATCACTCTAGTGGCCATGGC
GCACGAAATGATGCCTCGCACATTGAGAAGCGAATTCAGTTGGACGACGT
TACTTTTCCATCGTTCCTTTCTGATGCGGCGGTGGAGATGCTGTCCGGGC
TGCTCAAGAAGAATGAAGAGCAACGCATGAACCTGCAGGACCTCAAGGAG
GCGCTGTTCTTCGAAGGGGTGGATTGGGACAAGGTGCTGGAAGATGGCTA
TCAAAGTGCGGGCGCGCTGCAGCAGAGTGGCGCTACGCAACAAAGCTACG
ATCTCAAAAATTTTGATACGCATCGGTTGCAATCGCATGGAATTCGATTG
GAGGATGAGGCACTGCATGAGCGGAAGGGCAAGAAGGGAGGCGGCGCTGA
GGCGTTTGGCACTGGCTTGAGAAGCAGGAAGGCTTCGAGACTTGCGATGC
GTATCCGACAACGAAGTGATATGCACAAGGTGCAGAACGGGACGGCGATT
GTCGGGTTCGGCTACTCGTACGCTTCTGCCTCGGATGTGAGCACGATTCA
ATCGGATAGCAGTGGCAGCAGATGCAGCGGCAGCGCGAGCACAGTTGGGT
GCGTTGCGAGATCGCACGCTGCATGA
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