Ggra4385.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4385.t1
Unique NameGgra4385.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:140449..140946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog84751.XP_007878653.1
Preferred nameOMA1
PFAMsPeptidase_M48
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006508,GO:0006515,GO:0006807,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016043,GO:0016787,GO:0019538,GO:0019866,GO:0023052,GO:0030163,GO:0031090,GO:0031929,GO:0031966,GO:0031967,GO:0031975,GO:0035556,GO:0035694,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue6.03e-21
EggNOG OGsCOG0501@1|root,KOG2661@2759|Eukaryota,39RBA@33154|Opisthokonta,3NX2W@4751|Fungi,3UZ14@5204|Basidiomycota,3N4ZN@452284|Ustilaginomycotina
DescriptionPeptidase family M48
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4385Ggra4385Gracilaria gracilis GNS1m malegenetig00000898_pilon 140449..140946 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4385.t1.stop1Ggra4385.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 140449..140451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4385.t1.CDS1Ggra4385.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 140449..140946 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4385.t1.exon1Ggra4385.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 140449..140946 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4385.t1.start1Ggra4385.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 140944..140946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4385.t1Ggra4385.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 140449..140946 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4385.t1 ID=Ggra4385.t1|Name=Ggra4385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=166bp
MHMCSEEELAMVLAHEIAHAVNRHSAEKIQLQMLIWPLFVLLSAVFSSQM
LSISLTKLLLELPFGRRLEREADEVGMIIMTEACYDPRKGPSIFDKLAHA
MGEQKGGWVSTQMKSIVSTHPMSARRASDLRKKSEQLADRYEIKCGVAQH
MPEYDFGFPDVKSLD*
back to top

spliced messenger RNA

>Ggra4385.t1 ID=Ggra4385.t1|Name=Ggra4385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00000898_pilon:140449..140946- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATATGTGCAGCGAGGAAGAATTGGCTATGGTGCTTGCTCATGAGAT
TGCGCATGCCGTCAATCGACACTCTGCGGAGAAGATTCAACTGCAAATGT
TGATCTGGCCGCTGTTTGTACTCCTGTCGGCTGTGTTCAGTTCGCAGATG
TTGTCTATCAGTCTCACCAAGCTACTGCTTGAATTGCCGTTCGGAAGAAG
GCTGGAACGGGAAGCCGACGAGGTCGGAATGATCATAATGACTGAAGCTT
GCTATGATCCTCGGAAAGGTCCTTCTATTTTTGATAAACTTGCTCATGCT
ATGGGCGAACAAAAGGGCGGCTGGGTTTCTACACAGATGAAATCCATTGT
GTCCACGCATCCAATGTCCGCGCGAAGGGCCTCTGATCTCAGGAAAAAGT
CCGAACAATTGGCCGATCGCTACGAGATCAAGTGCGGCGTCGCTCAACAC
ATGCCTGAATACGATTTTGGATTCCCCGATGTCAAGTCACTCGATTAG
back to top

protein sequence of Ggra4385.t1

>Ggra4385.t1 ID=Ggra4385.t1|Name=Ggra4385.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=166bp
MHMCSEEELAMVLAHEIAHAVNRHSAEKIQLQMLIWPLFVLLSAVFSSQM
LSISLTKLLLELPFGRRLEREADEVGMIIMTEACYDPRKGPSIFDKLAHA
MGEQKGGWVSTQMKSIVSTHPMSARRASDLRKKSEQLADRYEIKCGVAQH
MPEYDFGFPDVKSLD*
back to top

mRNA from alignment at tig00000898_pilon:140449..140946-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4385.t1 ID=Ggra4385.t1|Name=Ggra4385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00000898_pilon:140449..140946- (Gracilaria gracilis GNS1m male)
ATGCATATGTGCAGCGAGGAAGAATTGGCTATGGTGCTTGCTCATGAGAT
TGCGCATGCCGTCAATCGACACTCTGCGGAGAAGATTCAACTGCAAATGT
TGATCTGGCCGCTGTTTGTACTCCTGTCGGCTGTGTTCAGTTCGCAGATG
TTGTCTATCAGTCTCACCAAGCTACTGCTTGAATTGCCGTTCGGAAGAAG
GCTGGAACGGGAAGCCGACGAGGTCGGAATGATCATAATGACTGAAGCTT
GCTATGATCCTCGGAAAGGTCCTTCTATTTTTGATAAACTTGCTCATGCT
ATGGGCGAACAAAAGGGCGGCTGGGTTTCTACACAGATGAAATCCATTGT
GTCCACGCATCCAATGTCCGCGCGAAGGGCCTCTGATCTCAGGAAAAAGT
CCGAACAATTGGCCGATCGCTACGAGATCAAGTGCGGCGTCGCTCAACAC
ATGCCTGAATACGATTTTGGATTCCCCGATGTCAAGTCACTCGATTAG
back to top

Coding sequence (CDS) from alignment at tig00000898_pilon:140449..140946-

>Ggra4385.t1 ID=Ggra4385.t1|Name=Ggra4385.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00000898_pilon:140449..140946- (Gracilaria gracilis GNS1m male)
ATGCATATGTGCAGCGAGGAAGAATTGGCTATGGTGCTTGCTCATGAGAT
TGCGCATGCCGTCAATCGACACTCTGCGGAGAAGATTCAACTGCAAATGT
TGATCTGGCCGCTGTTTGTACTCCTGTCGGCTGTGTTCAGTTCGCAGATG
TTGTCTATCAGTCTCACCAAGCTACTGCTTGAATTGCCGTTCGGAAGAAG
GCTGGAACGGGAAGCCGACGAGGTCGGAATGATCATAATGACTGAAGCTT
GCTATGATCCTCGGAAAGGTCCTTCTATTTTTGATAAACTTGCTCATGCT
ATGGGCGAACAAAAGGGCGGCTGGGTTTCTACACAGATGAAATCCATTGT
GTCCACGCATCCAATGTCCGCGCGAAGGGCCTCTGATCTCAGGAAAAAGT
CCGAACAATTGGCCGATCGCTACGAGATCAAGTGCGGCGTCGCTCAACAC
ATGCCTGAATACGATTTTGGATTCCCCGATGTCAAGTCACTCGATTAG
back to top