Ggra4355.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4355.t2
Unique Name	Ggra4355.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	399

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:30641..31837 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28532.XP_010531451.1
Preferred name	SAE2
PFAMs	ThiF,UAE_UbL,UBA_e1_thiolCys
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10685
KEGG Pathway	ko04120,map04120
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008641,GO:0009506,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016874,GO:0016877,GO:0016925,GO:0018193,GO:0018205,GO:0019538,GO:0019948,GO:0022414,GO:0030054,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055044,GO:0061458,GO:0070647,GO:0071704,GO:1901564
Evalue	2.09e-52
EggNOG OGs	COG0476@1\|root,KOG2013@2759\|Eukaryota,37Q67@33090\|Viridiplantae,3G9S4@35493\|Streptophyta,3HT48@3699\|Brassicales
EC	6.2.1.45
Description	sumo-activating enzyme
COG category	O
BRITE	ko00000,ko00001,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4355	Ggra4355	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 29738..31837 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4355.t2.start1	Ggra4355.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 30641..30643 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4355.t2.CDS1	Ggra4355.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 30641..31837 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4355.t2.exon1	Ggra4355.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 30641..31837 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4355.t2.stop1	Ggra4355.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 31835..31837 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4355.t2	Ggra4355.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 30641..31837 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:30641..31837+
coding sequence from alignment at tig00000898_pilon:30641..31837+

mRNA sequence

>Ggra4355.t2 ID=Ggra4355.t2|Name=Ggra4355.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp
MKDLWRQRAPPLVCDVRSAAASKQLLLDKVQLLSQNVWDVNLSAAVFMAV
LKNIVKRRGKEIGSLTFDKDDRDAMLFVAAASNLRANAYGVPLQSPFAVK
GIAGNIVHAIATTNALVGGLIVLEALKITTSGGNIDNCLTTFVSQAPRGS
RVKVILCPEKLQQPDPNCFVCSKGQLHLSVDTKQMTLKQLIHFVLQKKLS
MVKPDVYVATGDYHDTLYESGQGLDEDEIEVYQRNEAKKLSELKVENGSQ
LSISDFAQTLQCTIHISHIEDILADKPPEERFVLDGKVPTANDQGNEEGG
NAIEAPEDLDEHDVVEVPTQDIGQRHIVVNGKAHAAEKPEAMETDKENAA
STAEGAESAKRANDIDKMDTGKSEDVGTKRQREEVNGAEEGVTKRARS*

spliced messenger RNA

>Ggra4355.t2 ID=Ggra4355.t2|Name=Ggra4355.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000898_pilon:30641..31837+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGATTTATGGCGCCAACGTGCTCCACCGTTGGTTTGTGATGTACG
CTCTGCAGCTGCGTCTAAACAGCTTCTTCTCGACAAGGTACAGTTGTTAT
CTCAAAATGTATGGGACGTTAATCTCAGCGCTGCTGTATTTATGGCTGTC
TTAAAGAACATCGTGAAACGTCGAGGCAAAGAAATTGGGTCTCTGACTTT
TGACAAGGATGACAGAGATGCTATGCTGTTTGTTGCTGCCGCATCCAATC
TGCGAGCGAACGCTTACGGAGTGCCCCTTCAAAGTCCGTTTGCGGTTAAG
GGTATTGCTGGTAATATCGTTCATGCAATAGCAACTACGAATGCGTTAGT
TGGCGGACTTATTGTTTTGGAGGCGCTAAAGATCACCACTTCTGGCGGAA
ACATCGATAACTGCTTGACCACTTTTGTCAGTCAAGCACCTCGAGGCTCG
CGGGTCAAGGTCATTCTTTGTCCCGAGAAGCTACAGCAACCTGATCCTAA
TTGCTTTGTGTGCTCAAAGGGTCAACTACATCTGTCAGTTGATACCAAAC
AAATGACCCTCAAGCAGCTCATTCACTTTGTGCTGCAGAAGAAGTTGAGC
ATGGTGAAACCTGATGTTTATGTGGCTACTGGCGACTATCATGATACGCT
GTACGAGAGTGGTCAGGGATTGGATGAAGATGAAATCGAGGTGTATCAGA
GAAATGAAGCAAAGAAACTAAGCGAACTCAAAGTTGAAAACGGAAGTCAA
CTGTCGATCAGCGATTTTGCACAGACTCTTCAATGCACCATACACATATC
TCATATTGAAGATATACTCGCAGATAAACCTCCAGAAGAACGCTTTGTGT
TGGACGGAAAAGTTCCAACTGCCAACGACCAAGGCAACGAAGAGGGAGGC
AATGCGATAGAAGCACCTGAAGACTTGGATGAACACGATGTGGTGGAAGT
GCCAACTCAAGACATAGGTCAACGGCACATAGTGGTCAATGGCAAGGCTC
ATGCAGCTGAAAAGCCGGAGGCTATGGAAACTGACAAAGAGAACGCCGCA
AGCACCGCAGAGGGTGCAGAAAGTGCGAAGCGTGCAAATGATATTGACAA
AATGGACACAGGAAAGAGTGAAGACGTGGGTACGAAGAGACAACGAGAGG
AGGTGAATGGGGCCGAGGAAGGTGTGACGAAGAGAGCACGCTCGTAA

protein sequence of Ggra4355.t2

>Ggra4355.t2 ID=Ggra4355.t2|Name=Ggra4355.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=399bp
MKDLWRQRAPPLVCDVRSAAASKQLLLDKVQLLSQNVWDVNLSAAVFMAV
LKNIVKRRGKEIGSLTFDKDDRDAMLFVAAASNLRANAYGVPLQSPFAVK
GIAGNIVHAIATTNALVGGLIVLEALKITTSGGNIDNCLTTFVSQAPRGS
RVKVILCPEKLQQPDPNCFVCSKGQLHLSVDTKQMTLKQLIHFVLQKKLS
MVKPDVYVATGDYHDTLYESGQGLDEDEIEVYQRNEAKKLSELKVENGSQ
LSISDFAQTLQCTIHISHIEDILADKPPEERFVLDGKVPTANDQGNEEGG
NAIEAPEDLDEHDVVEVPTQDIGQRHIVVNGKAHAAEKPEAMETDKENAA
STAEGAESAKRANDIDKMDTGKSEDVGTKRQREEVNGAEEGVTKRARS*

mRNA from alignment at tig00000898_pilon:30641..31837+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4355.t2 ID=Ggra4355.t2|Name=Ggra4355.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000898_pilon:30641..31837+ (Gracilaria gracilis GNS1m male)
ATGAAAGATTTATGGCGCCAACGTGCTCCACCGTTGGTTTGTGATGTACG
CTCTGCAGCTGCGTCTAAACAGCTTCTTCTCGACAAGGTACAGTTGTTAT
CTCAAAATGTATGGGACGTTAATCTCAGCGCTGCTGTATTTATGGCTGTC
TTAAAGAACATCGTGAAACGTCGAGGCAAAGAAATTGGGTCTCTGACTTT
TGACAAGGATGACAGAGATGCTATGCTGTTTGTTGCTGCCGCATCCAATC
TGCGAGCGAACGCTTACGGAGTGCCCCTTCAAAGTCCGTTTGCGGTTAAG
GGTATTGCTGGTAATATCGTTCATGCAATAGCAACTACGAATGCGTTAGT
TGGCGGACTTATTGTTTTGGAGGCGCTAAAGATCACCACTTCTGGCGGAA
ACATCGATAACTGCTTGACCACTTTTGTCAGTCAAGCACCTCGAGGCTCG
CGGGTCAAGGTCATTCTTTGTCCCGAGAAGCTACAGCAACCTGATCCTAA
TTGCTTTGTGTGCTCAAAGGGTCAACTACATCTGTCAGTTGATACCAAAC
AAATGACCCTCAAGCAGCTCATTCACTTTGTGCTGCAGAAGAAGTTGAGC
ATGGTGAAACCTGATGTTTATGTGGCTACTGGCGACTATCATGATACGCT
GTACGAGAGTGGTCAGGGATTGGATGAAGATGAAATCGAGGTGTATCAGA
GAAATGAAGCAAAGAAACTAAGCGAACTCAAAGTTGAAAACGGAAGTCAA
CTGTCGATCAGCGATTTTGCACAGACTCTTCAATGCACCATACACATATC
TCATATTGAAGATATACTCGCAGATAAACCTCCAGAAGAACGCTTTGTGT
TGGACGGAAAAGTTCCAACTGCCAACGACCAAGGCAACGAAGAGGGAGGC
AATGCGATAGAAGCACCTGAAGACTTGGATGAACACGATGTGGTGGAAGT
GCCAACTCAAGACATAGGTCAACGGCACATAGTGGTCAATGGCAAGGCTC
ATGCAGCTGAAAAGCCGGAGGCTATGGAAACTGACAAAGAGAACGCCGCA
AGCACCGCAGAGGGTGCAGAAAGTGCGAAGCGTGCAAATGATATTGACAA
AATGGACACAGGAAAGAGTGAAGACGTGGGTACGAAGAGACAACGAGAGG
AGGTGAATGGGGCCGAGGAAGGTGTGACGAAGAGAGCACGCTCGTAA

Coding sequence (CDS) from alignment at tig00000898_pilon:30641..31837+

>Ggra4355.t2 ID=Ggra4355.t2|Name=Ggra4355.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00000898_pilon:30641..31837+ (Gracilaria gracilis GNS1m male)
ATGAAAGATTTATGGCGCCAACGTGCTCCACCGTTGGTTTGTGATGTACG
CTCTGCAGCTGCGTCTAAACAGCTTCTTCTCGACAAGGTACAGTTGTTAT
CTCAAAATGTATGGGACGTTAATCTCAGCGCTGCTGTATTTATGGCTGTC
TTAAAGAACATCGTGAAACGTCGAGGCAAAGAAATTGGGTCTCTGACTTT
TGACAAGGATGACAGAGATGCTATGCTGTTTGTTGCTGCCGCATCCAATC
TGCGAGCGAACGCTTACGGAGTGCCCCTTCAAAGTCCGTTTGCGGTTAAG
GGTATTGCTGGTAATATCGTTCATGCAATAGCAACTACGAATGCGTTAGT
TGGCGGACTTATTGTTTTGGAGGCGCTAAAGATCACCACTTCTGGCGGAA
ACATCGATAACTGCTTGACCACTTTTGTCAGTCAAGCACCTCGAGGCTCG
CGGGTCAAGGTCATTCTTTGTCCCGAGAAGCTACAGCAACCTGATCCTAA
TTGCTTTGTGTGCTCAAAGGGTCAACTACATCTGTCAGTTGATACCAAAC
AAATGACCCTCAAGCAGCTCATTCACTTTGTGCTGCAGAAGAAGTTGAGC
ATGGTGAAACCTGATGTTTATGTGGCTACTGGCGACTATCATGATACGCT
GTACGAGAGTGGTCAGGGATTGGATGAAGATGAAATCGAGGTGTATCAGA
GAAATGAAGCAAAGAAACTAAGCGAACTCAAAGTTGAAAACGGAAGTCAA
CTGTCGATCAGCGATTTTGCACAGACTCTTCAATGCACCATACACATATC
TCATATTGAAGATATACTCGCAGATAAACCTCCAGAAGAACGCTTTGTGT
TGGACGGAAAAGTTCCAACTGCCAACGACCAAGGCAACGAAGAGGGAGGC
AATGCGATAGAAGCACCTGAAGACTTGGATGAACACGATGTGGTGGAAGT
GCCAACTCAAGACATAGGTCAACGGCACATAGTGGTCAATGGCAAGGCTC
ATGCAGCTGAAAAGCCGGAGGCTATGGAAACTGACAAAGAGAACGCCGCA
AGCACCGCAGAGGGTGCAGAAAGTGCGAAGCGTGCAAATGATATTGACAA
AATGGACACAGGAAAGAGTGAAGACGTGGGTACGAAGAGACAACGAGAGG
AGGTGAATGGGGCCGAGGAAGGTGTGACGAAGAGAGCACGCTCGTAA