Ggra4353.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4353.t1
Unique NameGgra4353.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:25829..26302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4353Ggra4353Gracilaria gracilis GNS1m malegenetig00000898_pilon 25829..26302 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4353.t1.stop1Ggra4353.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 25829..25831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4353.t1.CDS1Ggra4353.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 25829..26302 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4353.t1.exon1Ggra4353.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 25829..26302 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4353.t1.start1Ggra4353.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 26300..26302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4353.t1Ggra4353.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 25829..26302 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4353.t1 ID=Ggra4353.t1|Name=Ggra4353.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=158bp
MRDPRIESNDDEGPTQKHYQITIREQELQTGRTLEIKPAEQDTIGSRISA
TSDSFAQDERFPNDQDSEHVSPKEVPRLLKLTHTSTPFDFLKRKACCFLS
KLSGFPKSEKYIELACSQSIPNDEKYGSVEKEKQMARIGDYIVLSMPVED
EIGMNTN*
back to top

spliced messenger RNA

>Ggra4353.t1 ID=Ggra4353.t1|Name=Ggra4353.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00000898_pilon:25829..26302- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGATCCTCGTATTGAAAGCAATGATGATGAAGGACCAACACAGAA
ACATTATCAAATCACTATTCGAGAACAGGAATTACAGACAGGTCGTACTC
TGGAGATCAAGCCCGCCGAACAGGATACAATCGGGTCTCGGATAAGTGCC
ACCTCAGATTCTTTCGCACAAGATGAGAGGTTCCCAAACGATCAAGATAG
CGAGCACGTAAGCCCTAAGGAAGTACCACGACTCTTGAAATTGACCCATA
CTTCAACTCCTTTCGATTTTCTGAAGAGGAAGGCATGTTGCTTTCTCTCC
AAACTTTCGGGATTTCCAAAGAGTGAGAAGTACATAGAGCTCGCATGTTC
TCAGAGCATCCCGAATGACGAAAAATATGGTTCAGTGGAGAAAGAAAAGC
AAATGGCGAGAATTGGAGACTACATCGTACTCTCCATGCCTGTTGAGGAT
GAAATAGGTATGAACACAAACTAA
back to top

protein sequence of Ggra4353.t1

>Ggra4353.t1 ID=Ggra4353.t1|Name=Ggra4353.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=158bp
MRDPRIESNDDEGPTQKHYQITIREQELQTGRTLEIKPAEQDTIGSRISA
TSDSFAQDERFPNDQDSEHVSPKEVPRLLKLTHTSTPFDFLKRKACCFLS
KLSGFPKSEKYIELACSQSIPNDEKYGSVEKEKQMARIGDYIVLSMPVED
EIGMNTN*
back to top

mRNA from alignment at tig00000898_pilon:25829..26302-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4353.t1 ID=Ggra4353.t1|Name=Ggra4353.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00000898_pilon:25829..26302- (Gracilaria gracilis GNS1m male)
ATGCGCGATCCTCGTATTGAAAGCAATGATGATGAAGGACCAACACAGAA
ACATTATCAAATCACTATTCGAGAACAGGAATTACAGACAGGTCGTACTC
TGGAGATCAAGCCCGCCGAACAGGATACAATCGGGTCTCGGATAAGTGCC
ACCTCAGATTCTTTCGCACAAGATGAGAGGTTCCCAAACGATCAAGATAG
CGAGCACGTAAGCCCTAAGGAAGTACCACGACTCTTGAAATTGACCCATA
CTTCAACTCCTTTCGATTTTCTGAAGAGGAAGGCATGTTGCTTTCTCTCC
AAACTTTCGGGATTTCCAAAGAGTGAGAAGTACATAGAGCTCGCATGTTC
TCAGAGCATCCCGAATGACGAAAAATATGGTTCAGTGGAGAAAGAAAAGC
AAATGGCGAGAATTGGAGACTACATCGTACTCTCCATGCCTGTTGAGGAT
GAAATAGGTATGAACACAAACTAA
back to top

Coding sequence (CDS) from alignment at tig00000898_pilon:25829..26302-

>Ggra4353.t1 ID=Ggra4353.t1|Name=Ggra4353.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=474bp|location=Sequence derived from alignment at tig00000898_pilon:25829..26302- (Gracilaria gracilis GNS1m male)
ATGCGCGATCCTCGTATTGAAAGCAATGATGATGAAGGACCAACACAGAA
ACATTATCAAATCACTATTCGAGAACAGGAATTACAGACAGGTCGTACTC
TGGAGATCAAGCCCGCCGAACAGGATACAATCGGGTCTCGGATAAGTGCC
ACCTCAGATTCTTTCGCACAAGATGAGAGGTTCCCAAACGATCAAGATAG
CGAGCACGTAAGCCCTAAGGAAGTACCACGACTCTTGAAATTGACCCATA
CTTCAACTCCTTTCGATTTTCTGAAGAGGAAGGCATGTTGCTTTCTCTCC
AAACTTTCGGGATTTCCAAAGAGTGAGAAGTACATAGAGCTCGCATGTTC
TCAGAGCATCCCGAATGACGAAAAATATGGTTCAGTGGAGAAAGAAAAGC
AAATGGCGAGAATTGGAGACTACATCGTACTCTCCATGCCTGTTGAGGAT
GAAATAGGTATGAACACAAACTAA
back to top