Ggra4351.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4351.t1
Unique NameGgra4351.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length404
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:22500..23711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S131_9V6.1
PFAMszf-C3HC4_3
Max annot lvl35493|Streptophyta
KEGG koko:K10604
KEGG Pathwayko04120,map04120
GOsGO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008277,GO:0008589,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023051,GO:0023057,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0043949,GO:0043951,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045744,GO:0045879,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902531,GO:1902532
Evalue3.88e-34
EggNOG OGsKOG4265@1|root,KOG4265@2759|Eukaryota,37QCG@33090|Viridiplantae,3G7XR@35493|Streptophyta
EC2.3.2.27
DescriptionE3 ubiquitin-protein ligase
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4351Ggra4351Gracilaria gracilis GNS1m malegenetig00000898_pilon 22500..23711 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4351.t1.stop1Ggra4351.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 22500..22502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4351.t1.CDS1Ggra4351.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 22500..23711 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4351.t1.exon1Ggra4351.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 22500..23711 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4351.t1.start1Ggra4351.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 23709..23711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4351.t1Ggra4351.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 22500..23711 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4351.t1 ID=Ggra4351.t1|Name=Ggra4351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=404bp
MGIAQSQDGDEHPANVPLPPPRPTLGQRPQNANNVPFASFRPNSRFTRSV
EYLRPVKMGRRVENVFIVPRANIRLLPCTSNSSIYVVEFEFKADVPGTVV
VYFNARERLDHTKVGEDTVVRDITYIPQGFLPAKSSFAKGDSQVYRQRAE
DGLDMRQRSKADLKFANDGVYPLVIRLDASHQLDERPDNSSTVKSHITLA
EILFTDEQPRVRIIEQKVYIGTNIFSMEDMYGIRASYNANHADQAGAEAD
SAAECVVCLTEPSTTAVQPCKHLCLCDDCTRILALEVESQQKCPVCRSPI
GKLLRIINPNHENSNAETEGADHSSVPAAGATASSNAVLPNWHPMQYTPL
RPMQPFETSVRARATPMSTNNRYIRNPLHVQERGGTSDFNEGSTHPINRM
HLE*
back to top

spliced messenger RNA

>Ggra4351.t1 ID=Ggra4351.t1|Name=Ggra4351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000898_pilon:22500..23711- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAATCGCCCAATCTCAGGATGGCGATGAGCATCCTGCCAATGTTCC
GCTTCCTCCACCAAGGCCCACGTTAGGTCAACGTCCGCAGAACGCCAACA
ATGTTCCGTTCGCAAGTTTCCGCCCCAACTCTCGTTTCACGCGCTCCGTT
GAGTATCTTCGCCCTGTTAAGATGGGCCGCAGAGTTGAGAACGTCTTCAT
CGTTCCAAGGGCAAACATTCGTCTGCTACCTTGCACGTCTAACTCGTCCA
TCTATGTCGTGGAATTTGAGTTCAAGGCCGATGTACCTGGCACTGTTGTT
GTGTACTTTAACGCCCGAGAGCGACTTGATCACACAAAGGTCGGAGAAGA
CACAGTTGTCAGAGATATAACGTATATTCCTCAGGGGTTTCTTCCGGCAA
AGTCATCGTTTGCCAAAGGAGACAGTCAAGTGTACCGCCAGCGCGCAGAG
GATGGTCTTGATATGCGGCAAAGGAGCAAAGCGGATCTCAAGTTCGCTAA
TGACGGCGTTTATCCGCTGGTGATACGACTTGATGCGTCACACCAACTTG
ACGAACGACCTGACAATTCGTCCACGGTCAAGTCGCATATAACTTTGGCA
GAAATCCTCTTTACAGACGAGCAGCCGCGTGTCCGGATTATCGAGCAGAA
GGTGTACATCGGCACCAACATTTTTTCGATGGAGGACATGTATGGCATTC
GAGCTTCGTACAACGCTAATCATGCAGACCAGGCCGGCGCTGAAGCAGAT
TCTGCCGCGGAGTGTGTCGTGTGTCTTACGGAACCAAGTACGACTGCAGT
TCAACCCTGCAAACATCTCTGTCTTTGTGACGACTGCACAAGAATACTTG
CTCTGGAGGTCGAGTCACAGCAGAAATGTCCAGTCTGTCGAAGTCCTATT
GGAAAGCTTCTGAGAATCATCAACCCAAATCACGAAAACTCGAATGCGGA
AACCGAGGGTGCTGACCATAGTTCTGTTCCTGCTGCAGGCGCCACGGCAT
CTTCCAATGCCGTATTACCAAACTGGCATCCTATGCAATACACCCCGCTG
CGACCGATGCAACCTTTTGAGACATCGGTTCGAGCAAGGGCGACGCCTAT
GTCAACTAATAACAGATATATTCGAAACCCCCTACATGTACAGGAAAGAG
GAGGCACGTCGGACTTCAACGAAGGATCGACCCACCCGATAAACAGAATG
CACCTCGAGTAG
back to top

protein sequence of Ggra4351.t1

>Ggra4351.t1 ID=Ggra4351.t1|Name=Ggra4351.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=404bp
MGIAQSQDGDEHPANVPLPPPRPTLGQRPQNANNVPFASFRPNSRFTRSV
EYLRPVKMGRRVENVFIVPRANIRLLPCTSNSSIYVVEFEFKADVPGTVV
VYFNARERLDHTKVGEDTVVRDITYIPQGFLPAKSSFAKGDSQVYRQRAE
DGLDMRQRSKADLKFANDGVYPLVIRLDASHQLDERPDNSSTVKSHITLA
EILFTDEQPRVRIIEQKVYIGTNIFSMEDMYGIRASYNANHADQAGAEAD
SAAECVVCLTEPSTTAVQPCKHLCLCDDCTRILALEVESQQKCPVCRSPI
GKLLRIINPNHENSNAETEGADHSSVPAAGATASSNAVLPNWHPMQYTPL
RPMQPFETSVRARATPMSTNNRYIRNPLHVQERGGTSDFNEGSTHPINRM
HLE*
back to top

mRNA from alignment at tig00000898_pilon:22500..23711-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4351.t1 ID=Ggra4351.t1|Name=Ggra4351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000898_pilon:22500..23711- (Gracilaria gracilis GNS1m male)
ATGGGAATCGCCCAATCTCAGGATGGCGATGAGCATCCTGCCAATGTTCC
GCTTCCTCCACCAAGGCCCACGTTAGGTCAACGTCCGCAGAACGCCAACA
ATGTTCCGTTCGCAAGTTTCCGCCCCAACTCTCGTTTCACGCGCTCCGTT
GAGTATCTTCGCCCTGTTAAGATGGGCCGCAGAGTTGAGAACGTCTTCAT
CGTTCCAAGGGCAAACATTCGTCTGCTACCTTGCACGTCTAACTCGTCCA
TCTATGTCGTGGAATTTGAGTTCAAGGCCGATGTACCTGGCACTGTTGTT
GTGTACTTTAACGCCCGAGAGCGACTTGATCACACAAAGGTCGGAGAAGA
CACAGTTGTCAGAGATATAACGTATATTCCTCAGGGGTTTCTTCCGGCAA
AGTCATCGTTTGCCAAAGGAGACAGTCAAGTGTACCGCCAGCGCGCAGAG
GATGGTCTTGATATGCGGCAAAGGAGCAAAGCGGATCTCAAGTTCGCTAA
TGACGGCGTTTATCCGCTGGTGATACGACTTGATGCGTCACACCAACTTG
ACGAACGACCTGACAATTCGTCCACGGTCAAGTCGCATATAACTTTGGCA
GAAATCCTCTTTACAGACGAGCAGCCGCGTGTCCGGATTATCGAGCAGAA
GGTGTACATCGGCACCAACATTTTTTCGATGGAGGACATGTATGGCATTC
GAGCTTCGTACAACGCTAATCATGCAGACCAGGCCGGCGCTGAAGCAGAT
TCTGCCGCGGAGTGTGTCGTGTGTCTTACGGAACCAAGTACGACTGCAGT
TCAACCCTGCAAACATCTCTGTCTTTGTGACGACTGCACAAGAATACTTG
CTCTGGAGGTCGAGTCACAGCAGAAATGTCCAGTCTGTCGAAGTCCTATT
GGAAAGCTTCTGAGAATCATCAACCCAAATCACGAAAACTCGAATGCGGA
AACCGAGGGTGCTGACCATAGTTCTGTTCCTGCTGCAGGCGCCACGGCAT
CTTCCAATGCCGTATTACCAAACTGGCATCCTATGCAATACACCCCGCTG
CGACCGATGCAACCTTTTGAGACATCGGTTCGAGCAAGGGCGACGCCTAT
GTCAACTAATAACAGATATATTCGAAACCCCCTACATGTACAGGAAAGAG
GAGGCACGTCGGACTTCAACGAAGGATCGACCCACCCGATAAACAGAATG
CACCTCGAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000898_pilon:22500..23711-

>Ggra4351.t1 ID=Ggra4351.t1|Name=Ggra4351.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1212bp|location=Sequence derived from alignment at tig00000898_pilon:22500..23711- (Gracilaria gracilis GNS1m male)
ATGGGAATCGCCCAATCTCAGGATGGCGATGAGCATCCTGCCAATGTTCC
GCTTCCTCCACCAAGGCCCACGTTAGGTCAACGTCCGCAGAACGCCAACA
ATGTTCCGTTCGCAAGTTTCCGCCCCAACTCTCGTTTCACGCGCTCCGTT
GAGTATCTTCGCCCTGTTAAGATGGGCCGCAGAGTTGAGAACGTCTTCAT
CGTTCCAAGGGCAAACATTCGTCTGCTACCTTGCACGTCTAACTCGTCCA
TCTATGTCGTGGAATTTGAGTTCAAGGCCGATGTACCTGGCACTGTTGTT
GTGTACTTTAACGCCCGAGAGCGACTTGATCACACAAAGGTCGGAGAAGA
CACAGTTGTCAGAGATATAACGTATATTCCTCAGGGGTTTCTTCCGGCAA
AGTCATCGTTTGCCAAAGGAGACAGTCAAGTGTACCGCCAGCGCGCAGAG
GATGGTCTTGATATGCGGCAAAGGAGCAAAGCGGATCTCAAGTTCGCTAA
TGACGGCGTTTATCCGCTGGTGATACGACTTGATGCGTCACACCAACTTG
ACGAACGACCTGACAATTCGTCCACGGTCAAGTCGCATATAACTTTGGCA
GAAATCCTCTTTACAGACGAGCAGCCGCGTGTCCGGATTATCGAGCAGAA
GGTGTACATCGGCACCAACATTTTTTCGATGGAGGACATGTATGGCATTC
GAGCTTCGTACAACGCTAATCATGCAGACCAGGCCGGCGCTGAAGCAGAT
TCTGCCGCGGAGTGTGTCGTGTGTCTTACGGAACCAAGTACGACTGCAGT
TCAACCCTGCAAACATCTCTGTCTTTGTGACGACTGCACAAGAATACTTG
CTCTGGAGGTCGAGTCACAGCAGAAATGTCCAGTCTGTCGAAGTCCTATT
GGAAAGCTTCTGAGAATCATCAACCCAAATCACGAAAACTCGAATGCGGA
AACCGAGGGTGCTGACCATAGTTCTGTTCCTGCTGCAGGCGCCACGGCAT
CTTCCAATGCCGTATTACCAAACTGGCATCCTATGCAATACACCCCGCTG
CGACCGATGCAACCTTTTGAGACATCGGTTCGAGCAAGGGCGACGCCTAT
GTCAACTAATAACAGATATATTCGAAACCCCCTACATGTACAGGAAAGAG
GAGGCACGTCGGACTTCAACGAAGGATCGACCCACCCGATAAACAGAATG
CACCTCGAGTAG
back to top