Ggra4349.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4349.t1
Unique NameGgra4349.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:19310..20101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123070.KB899253_gene1138
Preferred nameproC
PFAMsF420_oxidored,P5CR_dimer
Max annot lvl203494|Verrucomicrobiae
KEGG rclassRC00054,RC00083
KEGG koko:K00286
KEGG ReactionR01248,R01251,R03291,R03293
KEGG Pathwayko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230
KEGG ModuleM00015
Evalue2.65e-28
EggNOG OGsCOG0345@1|root,COG0345@2|Bacteria,46T4K@74201|Verrucomicrobia,2IUB9@203494|Verrucomicrobiae
EC1.5.1.2
DescriptionPyrroline-5-carboxylate reductase dimerisation
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4349Ggra4349Gracilaria gracilis GNS1m malegenetig00000898_pilon 19310..20101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4349.t1Ggra4349.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 19310..20101 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4349.t1.stop1Ggra4349.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 19310..19312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4349.t1.CDS1Ggra4349.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 19310..19704 -
Ggra4349.t1.CDS2Ggra4349.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 19840..19871 -
Ggra4349.t1.CDS3Ggra4349.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000898_pilon 20049..20101 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4349.t1.exon1Ggra4349.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 19310..19704 -
Ggra4349.t1.exon2Ggra4349.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 19840..19871 -
Ggra4349.t1.exon3Ggra4349.t1.exon3Gracilaria gracilis GNS1m maleexontig00000898_pilon 20049..20101 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4349.t1.intron1Ggra4349.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 19705..19839 -
Ggra4349.t1.intron2Ggra4349.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000898_pilon 19872..20048 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4349.t1.start1Ggra4349.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 20099..20101 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4349.t1 ID=Ggra4349.t1|Name=Ggra4349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=160bp
MATALINGLLSQSTPPVLNDPVLVSIVAAAQEHHINRAEQILAAVGTVYH
TSESLMASATGLSGAGVAYVFMMAEALADVGVKHGFSREHALAMAADTIK
GAGDMLQQGKHPALLRNMVESPGGVTVVGTSQLEERGFRTAIGAAVDAAV
NKAQQMGDN*
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spliced messenger RNA

>Ggra4349.t1 ID=Ggra4349.t1|Name=Ggra4349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000898_pilon:19310..20101- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCGCATTAATCAACGGCTTGTTGTCTCAAAGCACCCCACCCGT
ACTAAACGACCCGGTTCTTGTTTCCATAGTTGCAGCTGCTCAAGAACATC
ATATCAATCGCGCCGAGCAAATCCTTGCTGCGGTGGGTACCGTGTATCAC
ACTTCTGAAAGCCTTATGGCGTCTGCCACTGGCTTATCTGGTGCAGGGGT
GGCGTATGTGTTCATGATGGCTGAGGCACTGGCCGATGTCGGTGTTAAGC
ATGGCTTTTCAAGAGAACATGCTTTAGCCATGGCTGCTGATACTATTAAA
GGTGCAGGTGATATGCTGCAACAAGGCAAACATCCTGCGCTGTTGAGGAA
TATGGTAGAGAGTCCCGGAGGTGTTACTGTTGTTGGTACTTCGCAGTTAG
AGGAACGAGGCTTTCGAACCGCAATAGGTGCTGCTGTTGATGCAGCAGTG
AATAAAGCTCAGCAGATGGGCGATAACTGA
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protein sequence of Ggra4349.t1

>Ggra4349.t1 ID=Ggra4349.t1|Name=Ggra4349.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=160bp
MATALINGLLSQSTPPVLNDPVLVSIVAAAQEHHINRAEQILAAVGTVYH
TSESLMASATGLSGAGVAYVFMMAEALADVGVKHGFSREHALAMAADTIK
GAGDMLQQGKHPALLRNMVESPGGVTVVGTSQLEERGFRTAIGAAVDAAV
NKAQQMGDN*
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mRNA from alignment at tig00000898_pilon:19310..20101-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4349.t1 ID=Ggra4349.t1|Name=Ggra4349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000898_pilon:19310..20101- (Gracilaria gracilis GNS1m male)
ATGGCCACCGCATTAATCAACGGCTTGTTGTCTCAAAGCACCCCACCCGT
ACTGTACGCATCTTCTCCTTCACTCCAGCTTCTTTCACATCTCCCAGAGG
CTGCGAAAGAGAATCAAACCACTTCAAACACTGAAGCCTGTCAACAAGCA
AATCTTGTGCTTTTGTGCGTCAAGCCCAACATTGCTCCAATCGTCCTTTC
GGAAATTGCCCCCGTTCTCCACCGATCTAGAAACGACCCGGTTCTTGTTT
CCATAGTTGCAGGTATGAGCACCTCCTCTCTTCAGGAGCACATGTCTTCA
TCCAATCAATCGCATAATCATATTCCGATTGTTAGAGCCATGCCCAACTT
ACCTGCTTCCACACAATCCGCATGCACCGTAATCTGCACAAACTCAGCTG
CTCAAGAACATCATATCAATCGCGCCGAGCAAATCCTTGCTGCGGTGGGT
ACCGTGTATCACACTTCTGAAAGCCTTATGGCGTCTGCCACTGGCTTATC
TGGTGCAGGGGTGGCGTATGTGTTCATGATGGCTGAGGCACTGGCCGATG
TCGGTGTTAAGCATGGCTTTTCAAGAGAACATGCTTTAGCCATGGCTGCT
GATACTATTAAAGGTGCAGGTGATATGCTGCAACAAGGCAAACATCCTGC
GCTGTTGAGGAATATGGTAGAGAGTCCCGGAGGTGTTACTGTTGTTGGTA
CTTCGCAGTTAGAGGAACGAGGCTTTCGAACCGCAATAGGTGCTGCTGTT
GATGCAGCAGTGAATAAAGCTCAGCAGATGGGCGATAACTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:19310..20101-

>Ggra4349.t1 ID=Ggra4349.t1|Name=Ggra4349.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=480bp|location=Sequence derived from alignment at tig00000898_pilon:19310..20101- (Gracilaria gracilis GNS1m male)
ATGGCCACCGCATTAATCAACGGCTTGTTGTCTCAAAGCACCCCACCCGT
ACTAAACGACCCGGTTCTTGTTTCCATAGTTGCAGCTGCTCAAGAACATC
ATATCAATCGCGCCGAGCAAATCCTTGCTGCGGTGGGTACCGTGTATCAC
ACTTCTGAAAGCCTTATGGCGTCTGCCACTGGCTTATCTGGTGCAGGGGT
GGCGTATGTGTTCATGATGGCTGAGGCACTGGCCGATGTCGGTGTTAAGC
ATGGCTTTTCAAGAGAACATGCTTTAGCCATGGCTGCTGATACTATTAAA
GGTGCAGGTGATATGCTGCAACAAGGCAAACATCCTGCGCTGTTGAGGAA
TATGGTAGAGAGTCCCGGAGGTGTTACTGTTGTTGGTACTTCGCAGTTAG
AGGAACGAGGCTTTCGAACCGCAATAGGTGCTGCTGTTGATGCAGCAGTG
AATAAAGCTCAGCAGATGGGCGATAACTGA
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