Ggra4348.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4348.t1
Unique NameGgra4348.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length562
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:16270..18078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_04553T0
Max annot lvl4751|Fungi
Evalue6.52e-17
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4348Ggra4348Gracilaria gracilis GNS1m malegenetig00000898_pilon 16270..18078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4348.t1Ggra4348.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 16270..18078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4348.t1.stop1Ggra4348.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 16270..16272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4348.t1.CDS1Ggra4348.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 16270..17923 -
Ggra4348.t1.CDS2Ggra4348.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 18047..18078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4348.t1.exon1Ggra4348.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 16270..17923 -
Ggra4348.t1.exon2Ggra4348.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 18047..18078 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4348.t1.intron1Ggra4348.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 17924..18046 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4348.t1.start1Ggra4348.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 18076..18078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4348.t1 ID=Ggra4348.t1|Name=Ggra4348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=562bp
MATWSKSDGHSFLTSPHPMSTLDGCRIGGTGGFIGNCPGPCPNYNLAGDA
DPSNPTVIFQRGGYHRVVWSRNNHEGGFVRWTMVPLNKKDSKQWHSKMAF
HYNCWNVGRFNCNDFDFHRDCNYDRQNEAYAKMLYIPPVFPDGDYVLGWT
WYGGGVGHGHFGDYYDCAYVRVSGGEPVQESYVPEFAAGGGSEYEDGCEA
TVDDLGICWKEPCLPMRKTEKRVPAQFKDGKTPEPILSEWYGEGKSTNPA
SVGLSRLLLVDARKDRILDVDLHEIILLHRSDEISLMAETTGDVESVEWY
TNGKKNGKDYSLPYTVAGDDHEDDIYPWMHPLFNRRMRVSVKIVGKDGTF
SWGSVELRFKEGGAGAAHFPGQHIHDYSPAHNAHEEENHEDSEEDPKWIQ
EPISDADTTGTTEETESTVIEEEEAPPTDTHSETVPQQNSDSGSSVELAP
QPASDTTGSTEAHSSSGSSVNAAPAPPPPPQPVAVEEPQQSGSTGVFGGS
SASTGSGSVSAGGSSSFSGSFLGRGGGDAGSKRGRATVRNAALGVITESE
DEMQKAYGQFA*
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spliced messenger RNA

>Ggra4348.t1 ID=Ggra4348.t1|Name=Ggra4348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000898_pilon:16270..18078- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACATGGTCAAAATCTGACGGGCATAGCTTCCTTACAAGTCCGCA
CCCAATGTCGACCTTAGATGGATGCCGTATCGGTGGGACTGGTGGTTTCA
TCGGCAACTGCCCTGGTCCGTGTCCAAACTACAACCTTGCAGGAGATGCA
GACCCGTCAAATCCCACAGTTATATTCCAACGAGGAGGATACCATAGAGT
CGTGTGGTCCCGAAACAATCATGAAGGTGGGTTTGTCCGTTGGACTATGG
TTCCTCTAAACAAGAAGGATTCCAAACAATGGCACTCAAAGATGGCTTTT
CACTACAACTGCTGGAATGTAGGACGATTCAATTGCAATGACTTCGACTT
CCACAGAGACTGCAACTACGACAGACAGAACGAAGCGTATGCGAAAATGT
TATACATTCCACCCGTGTTTCCGGACGGAGATTATGTTCTTGGTTGGACA
TGGTACGGTGGCGGCGTTGGGCACGGTCACTTCGGCGATTACTACGACTG
CGCTTATGTGAGAGTTAGCGGCGGAGAACCAGTTCAGGAATCGTACGTTC
CTGAATTTGCGGCGGGAGGAGGAAGCGAATATGAGGATGGTTGCGAAGCA
ACGGTTGATGACCTTGGTATTTGTTGGAAAGAACCCTGTCTTCCAATGCG
CAAGACAGAAAAGCGAGTTCCTGCACAGTTCAAAGATGGCAAGACTCCGG
AACCTATTCTGTCAGAGTGGTATGGGGAAGGAAAGAGCACAAACCCTGCA
TCAGTTGGCCTTTCTCGTCTTTTGCTGGTAGACGCAAGAAAGGACAGAAT
ACTTGACGTCGACCTTCACGAAATCATTCTTCTTCATAGAAGTGATGAGA
TCTCTCTAATGGCAGAGACAACCGGTGATGTTGAGTCCGTTGAATGGTAC
ACAAATGGCAAGAAGAATGGAAAAGATTATTCTCTCCCGTACACAGTTGC
CGGTGATGATCACGAGGACGATATTTATCCTTGGATGCACCCGCTATTTA
ATCGACGGATGCGAGTGTCCGTGAAGATAGTTGGAAAAGATGGCACGTTT
TCTTGGGGTAGCGTTGAGTTGCGCTTCAAAGAGGGAGGAGCTGGAGCTGC
GCATTTCCCTGGCCAACATATTCATGACTATTCGCCTGCTCATAATGCAC
ACGAGGAAGAGAATCACGAAGATTCTGAAGAAGATCCCAAATGGATTCAG
GAACCTATCTCGGATGCGGACACTACCGGAACTACAGAAGAAACAGAGTC
TACCGTAATCGAAGAAGAGGAAGCCCCTCCAACAGATACTCACTCAGAAA
CTGTTCCGCAGCAAAACTCAGATTCTGGATCTTCGGTGGAACTTGCTCCT
CAACCAGCGTCAGACACTACCGGCTCTACTGAGGCACACAGTTCATCAGG
TAGCTCCGTCAATGCAGCCCCAGCCCCGCCACCCCCACCACAGCCCGTGG
CGGTGGAAGAACCACAACAGTCGGGATCCACAGGAGTATTTGGTGGCTCA
TCGGCATCAACCGGTTCTGGTTCAGTGTCTGCCGGCGGTTCTTCTTCATT
TTCTGGCAGTTTCCTCGGAAGAGGCGGAGGCGATGCAGGTTCGAAAAGAG
GACGAGCCACTGTAAGAAACGCTGCTCTTGGCGTGATCACCGAAAGCGAG
GATGAAATGCAAAAGGCTTACGGTCAGTTTGCCTAA
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protein sequence of Ggra4348.t1

>Ggra4348.t1 ID=Ggra4348.t1|Name=Ggra4348.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=562bp
MATWSKSDGHSFLTSPHPMSTLDGCRIGGTGGFIGNCPGPCPNYNLAGDA
DPSNPTVIFQRGGYHRVVWSRNNHEGGFVRWTMVPLNKKDSKQWHSKMAF
HYNCWNVGRFNCNDFDFHRDCNYDRQNEAYAKMLYIPPVFPDGDYVLGWT
WYGGGVGHGHFGDYYDCAYVRVSGGEPVQESYVPEFAAGGGSEYEDGCEA
TVDDLGICWKEPCLPMRKTEKRVPAQFKDGKTPEPILSEWYGEGKSTNPA
SVGLSRLLLVDARKDRILDVDLHEIILLHRSDEISLMAETTGDVESVEWY
TNGKKNGKDYSLPYTVAGDDHEDDIYPWMHPLFNRRMRVSVKIVGKDGTF
SWGSVELRFKEGGAGAAHFPGQHIHDYSPAHNAHEEENHEDSEEDPKWIQ
EPISDADTTGTTEETESTVIEEEEAPPTDTHSETVPQQNSDSGSSVELAP
QPASDTTGSTEAHSSSGSSVNAAPAPPPPPQPVAVEEPQQSGSTGVFGGS
SASTGSGSVSAGGSSSFSGSFLGRGGGDAGSKRGRATVRNAALGVITESE
DEMQKAYGQFA*
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mRNA from alignment at tig00000898_pilon:16270..18078-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4348.t1 ID=Ggra4348.t1|Name=Ggra4348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1809bp|location=Sequence derived from alignment at tig00000898_pilon:16270..18078- (Gracilaria gracilis GNS1m male)
ATGGCTACATGGTCAAAATCTGACGGGCATAGGTACGGCATTGTCATTAT
CCAAGTATAATGAACCAAGAACCACGGGGAAGCGCATCGACCATTCATGA
AACTAACAAGTTAGTTTATTTTCTTCTCCTTGATTGTGGCGTTGCCGGGA
AAAAGCTTCCTTACAAGTCCGCACCCAATGTCGACCTTAGATGGATGCCG
TATCGGTGGGACTGGTGGTTTCATCGGCAACTGCCCTGGTCCGTGTCCAA
ACTACAACCTTGCAGGAGATGCAGACCCGTCAAATCCCACAGTTATATTC
CAACGAGGAGGATACCATAGAGTCGTGTGGTCCCGAAACAATCATGAAGG
TGGGTTTGTCCGTTGGACTATGGTTCCTCTAAACAAGAAGGATTCCAAAC
AATGGCACTCAAAGATGGCTTTTCACTACAACTGCTGGAATGTAGGACGA
TTCAATTGCAATGACTTCGACTTCCACAGAGACTGCAACTACGACAGACA
GAACGAAGCGTATGCGAAAATGTTATACATTCCACCCGTGTTTCCGGACG
GAGATTATGTTCTTGGTTGGACATGGTACGGTGGCGGCGTTGGGCACGGT
CACTTCGGCGATTACTACGACTGCGCTTATGTGAGAGTTAGCGGCGGAGA
ACCAGTTCAGGAATCGTACGTTCCTGAATTTGCGGCGGGAGGAGGAAGCG
AATATGAGGATGGTTGCGAAGCAACGGTTGATGACCTTGGTATTTGTTGG
AAAGAACCCTGTCTTCCAATGCGCAAGACAGAAAAGCGAGTTCCTGCACA
GTTCAAAGATGGCAAGACTCCGGAACCTATTCTGTCAGAGTGGTATGGGG
AAGGAAAGAGCACAAACCCTGCATCAGTTGGCCTTTCTCGTCTTTTGCTG
GTAGACGCAAGAAAGGACAGAATACTTGACGTCGACCTTCACGAAATCAT
TCTTCTTCATAGAAGTGATGAGATCTCTCTAATGGCAGAGACAACCGGTG
ATGTTGAGTCCGTTGAATGGTACACAAATGGCAAGAAGAATGGAAAAGAT
TATTCTCTCCCGTACACAGTTGCCGGTGATGATCACGAGGACGATATTTA
TCCTTGGATGCACCCGCTATTTAATCGACGGATGCGAGTGTCCGTGAAGA
TAGTTGGAAAAGATGGCACGTTTTCTTGGGGTAGCGTTGAGTTGCGCTTC
AAAGAGGGAGGAGCTGGAGCTGCGCATTTCCCTGGCCAACATATTCATGA
CTATTCGCCTGCTCATAATGCACACGAGGAAGAGAATCACGAAGATTCTG
AAGAAGATCCCAAATGGATTCAGGAACCTATCTCGGATGCGGACACTACC
GGAACTACAGAAGAAACAGAGTCTACCGTAATCGAAGAAGAGGAAGCCCC
TCCAACAGATACTCACTCAGAAACTGTTCCGCAGCAAAACTCAGATTCTG
GATCTTCGGTGGAACTTGCTCCTCAACCAGCGTCAGACACTACCGGCTCT
ACTGAGGCACACAGTTCATCAGGTAGCTCCGTCAATGCAGCCCCAGCCCC
GCCACCCCCACCACAGCCCGTGGCGGTGGAAGAACCACAACAGTCGGGAT
CCACAGGAGTATTTGGTGGCTCATCGGCATCAACCGGTTCTGGTTCAGTG
TCTGCCGGCGGTTCTTCTTCATTTTCTGGCAGTTTCCTCGGAAGAGGCGG
AGGCGATGCAGGTTCGAAAAGAGGACGAGCCACTGTAAGAAACGCTGCTC
TTGGCGTGATCACCGAAAGCGAGGATGAAATGCAAAAGGCTTACGGTCAG
TTTGCCTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:16270..18078-

>Ggra4348.t1 ID=Ggra4348.t1|Name=Ggra4348.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1686bp|location=Sequence derived from alignment at tig00000898_pilon:16270..18078- (Gracilaria gracilis GNS1m male)
ATGGCTACATGGTCAAAATCTGACGGGCATAGCTTCCTTACAAGTCCGCA
CCCAATGTCGACCTTAGATGGATGCCGTATCGGTGGGACTGGTGGTTTCA
TCGGCAACTGCCCTGGTCCGTGTCCAAACTACAACCTTGCAGGAGATGCA
GACCCGTCAAATCCCACAGTTATATTCCAACGAGGAGGATACCATAGAGT
CGTGTGGTCCCGAAACAATCATGAAGGTGGGTTTGTCCGTTGGACTATGG
TTCCTCTAAACAAGAAGGATTCCAAACAATGGCACTCAAAGATGGCTTTT
CACTACAACTGCTGGAATGTAGGACGATTCAATTGCAATGACTTCGACTT
CCACAGAGACTGCAACTACGACAGACAGAACGAAGCGTATGCGAAAATGT
TATACATTCCACCCGTGTTTCCGGACGGAGATTATGTTCTTGGTTGGACA
TGGTACGGTGGCGGCGTTGGGCACGGTCACTTCGGCGATTACTACGACTG
CGCTTATGTGAGAGTTAGCGGCGGAGAACCAGTTCAGGAATCGTACGTTC
CTGAATTTGCGGCGGGAGGAGGAAGCGAATATGAGGATGGTTGCGAAGCA
ACGGTTGATGACCTTGGTATTTGTTGGAAAGAACCCTGTCTTCCAATGCG
CAAGACAGAAAAGCGAGTTCCTGCACAGTTCAAAGATGGCAAGACTCCGG
AACCTATTCTGTCAGAGTGGTATGGGGAAGGAAAGAGCACAAACCCTGCA
TCAGTTGGCCTTTCTCGTCTTTTGCTGGTAGACGCAAGAAAGGACAGAAT
ACTTGACGTCGACCTTCACGAAATCATTCTTCTTCATAGAAGTGATGAGA
TCTCTCTAATGGCAGAGACAACCGGTGATGTTGAGTCCGTTGAATGGTAC
ACAAATGGCAAGAAGAATGGAAAAGATTATTCTCTCCCGTACACAGTTGC
CGGTGATGATCACGAGGACGATATTTATCCTTGGATGCACCCGCTATTTA
ATCGACGGATGCGAGTGTCCGTGAAGATAGTTGGAAAAGATGGCACGTTT
TCTTGGGGTAGCGTTGAGTTGCGCTTCAAAGAGGGAGGAGCTGGAGCTGC
GCATTTCCCTGGCCAACATATTCATGACTATTCGCCTGCTCATAATGCAC
ACGAGGAAGAGAATCACGAAGATTCTGAAGAAGATCCCAAATGGATTCAG
GAACCTATCTCGGATGCGGACACTACCGGAACTACAGAAGAAACAGAGTC
TACCGTAATCGAAGAAGAGGAAGCCCCTCCAACAGATACTCACTCAGAAA
CTGTTCCGCAGCAAAACTCAGATTCTGGATCTTCGGTGGAACTTGCTCCT
CAACCAGCGTCAGACACTACCGGCTCTACTGAGGCACACAGTTCATCAGG
TAGCTCCGTCAATGCAGCCCCAGCCCCGCCACCCCCACCACAGCCCGTGG
CGGTGGAAGAACCACAACAGTCGGGATCCACAGGAGTATTTGGTGGCTCA
TCGGCATCAACCGGTTCTGGTTCAGTGTCTGCCGGCGGTTCTTCTTCATT
TTCTGGCAGTTTCCTCGGAAGAGGCGGAGGCGATGCAGGTTCGAAAAGAG
GACGAGCCACTGTAAGAAACGCTGCTCTTGGCGTGATCACCGAAAGCGAG
GATGAAATGCAAAAGGCTTACGGTCAGTTTGCCTAA
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