Ggra4347.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4347.t1
Unique Name	Ggra4347.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:14760..16160 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4098.XP_009587249.1
PFAMs	DAO
Max annot lvl	35493\|Streptophyta
Evalue	6.08e-37
EggNOG OGs	COG0665@1\|root,2QQBA@2759\|Eukaryota,37S72@33090\|Viridiplantae,3G8P6@35493\|Streptophyta,44EYA@71274\|asterids
Description	FAD dependent oxidoreductase
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4347	Ggra4347	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 14760..16160 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4347.t1.start1	Ggra4347.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 14760..14762 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4347.t1.CDS1	Ggra4347.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 14760..16160 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4347.t1.exon1	Ggra4347.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 14760..16160 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4347.t1.stop1	Ggra4347.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 16158..16160 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4347.t1	Ggra4347.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 14760..16160 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:14760..16160+
coding sequence from alignment at tig00000898_pilon:14760..16160+

mRNA sequence

>Ggra4347.t1 ID=Ggra4347.t1|Name=Ggra4347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=467bp
MAYRHFRTALHNTLSSHLTFTACPPIAAFNRHTATLTLHHFARKTKSRRT
PRSNVAPPEVPPPRRVAIIGGGLAGLATAYHLLNSTARYARKRGLAHTDL
RLTIFDPCDPAEGGASAVAAGLLHPFAPKVKKKVWQSVKAINATLHLVDQ
AQSCSQTPLIAFPGLLRLALRERQLVDYRIAANRYPQEVQFLEPHEVASR
FPHVNHNVPAVFLNKAAVVNTPEYLRALWRLCEQSGRIEWRKQSVQNVRH
ILGEDTVSYDTVVVCAGAAIPGIEGVGHVPVQLCRGQNLILQSRQDMYTH
EIPVISAKYIVPDLFSDKKSSRLVAGATFEHQRDEEDQELFMQELCKQDV
TRAVSELQRPLEALSPNVLENCSVLGATSGTRALPPRSALGSIPIVCKMS
GTDIRTSCWLYTGLGSRGLLHHAYLARVLAHAIVAGNERLIPLETRRLEL
ELPAIDSCRDVAVCNA*

spliced messenger RNA

>Ggra4347.t1 ID=Ggra4347.t1|Name=Ggra4347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000898_pilon:14760..16160+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTATCGGCATTTTCGAACGGCTCTTCACAACACTCTAAGCTCACA
CTTGACTTTCACTGCCTGTCCGCCAATTGCAGCGTTCAATCGCCACACAG
CCACTCTCACGCTGCATCATTTCGCTCGAAAGACAAAGAGCAGACGAACC
CCGCGCTCAAATGTTGCACCTCCCGAAGTTCCTCCTCCCCGTCGGGTGGC
CATAATTGGCGGCGGTTTAGCAGGCTTGGCCACCGCCTATCATCTACTCA
ATTCAACCGCTCGCTATGCACGAAAAAGAGGTTTGGCACATACCGACCTA
CGTCTCACCATTTTTGACCCCTGCGATCCCGCTGAGGGAGGTGCTAGCGC
AGTTGCTGCCGGTTTGTTGCATCCTTTTGCTCCTAAGGTTAAGAAAAAGG
TGTGGCAATCCGTGAAAGCTATTAATGCAACTTTGCATCTTGTCGATCAA
GCTCAGAGCTGCTCTCAAACTCCGCTTATTGCTTTTCCTGGTTTGCTTCG
GCTTGCTTTGCGTGAACGGCAACTTGTTGACTATCGAATCGCTGCAAATC
GTTATCCACAGGAAGTGCAATTTTTGGAGCCGCATGAGGTGGCAAGCCGC
TTTCCGCATGTGAACCATAACGTGCCTGCTGTGTTCTTGAACAAGGCGGC
GGTGGTAAATACTCCTGAATATCTACGAGCATTGTGGCGCCTATGCGAAC
AATCTGGTCGCATCGAATGGCGGAAACAGAGTGTGCAAAACGTGCGACAC
ATTTTGGGTGAGGATACGGTCTCATATGATACAGTTGTCGTTTGCGCTGG
TGCTGCGATCCCAGGCATAGAAGGAGTCGGGCATGTACCAGTTCAGTTAT
GTCGAGGTCAGAATTTGATACTACAATCACGTCAAGATATGTACACACAT
GAGATCCCTGTTATAAGCGCTAAATACATAGTTCCAGACTTGTTCAGCGA
TAAGAAATCCTCACGTCTGGTGGCAGGCGCAACCTTTGAGCATCAACGAG
ACGAAGAGGATCAAGAGCTCTTCATGCAAGAGCTTTGCAAGCAGGATGTT
ACTCGAGCTGTTTCGGAATTGCAGCGACCGCTAGAAGCATTGAGCCCAAA
TGTCTTGGAAAATTGTTCTGTTCTCGGTGCAACATCGGGCACGCGAGCTT
TACCTCCGCGTTCCGCCCTCGGTTCTATCCCTATCGTGTGCAAAATGTCT
GGGACGGATATCAGAACTTCATGTTGGCTCTACACAGGTTTGGGTTCTCG
CGGTTTGTTACATCATGCCTATCTTGCACGTGTTCTCGCCCATGCAATTG
TTGCTGGTAACGAGCGTTTAATACCGCTTGAAACACGCCGCTTGGAACTC
GAGCTACCCGCAATAGACTCATGTCGGGATGTAGCCGTGTGCAATGCATG
A

protein sequence of Ggra4347.t1

>Ggra4347.t1 ID=Ggra4347.t1|Name=Ggra4347.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=467bp
MAYRHFRTALHNTLSSHLTFTACPPIAAFNRHTATLTLHHFARKTKSRRT
PRSNVAPPEVPPPRRVAIIGGGLAGLATAYHLLNSTARYARKRGLAHTDL
RLTIFDPCDPAEGGASAVAAGLLHPFAPKVKKKVWQSVKAINATLHLVDQ
AQSCSQTPLIAFPGLLRLALRERQLVDYRIAANRYPQEVQFLEPHEVASR
FPHVNHNVPAVFLNKAAVVNTPEYLRALWRLCEQSGRIEWRKQSVQNVRH
ILGEDTVSYDTVVVCAGAAIPGIEGVGHVPVQLCRGQNLILQSRQDMYTH
EIPVISAKYIVPDLFSDKKSSRLVAGATFEHQRDEEDQELFMQELCKQDV
TRAVSELQRPLEALSPNVLENCSVLGATSGTRALPPRSALGSIPIVCKMS
GTDIRTSCWLYTGLGSRGLLHHAYLARVLAHAIVAGNERLIPLETRRLEL
ELPAIDSCRDVAVCNA*

mRNA from alignment at tig00000898_pilon:14760..16160+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4347.t1 ID=Ggra4347.t1|Name=Ggra4347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000898_pilon:14760..16160+ (Gracilaria gracilis GNS1m male)
ATGGCTTATCGGCATTTTCGAACGGCTCTTCACAACACTCTAAGCTCACA
CTTGACTTTCACTGCCTGTCCGCCAATTGCAGCGTTCAATCGCCACACAG
CCACTCTCACGCTGCATCATTTCGCTCGAAAGACAAAGAGCAGACGAACC
CCGCGCTCAAATGTTGCACCTCCCGAAGTTCCTCCTCCCCGTCGGGTGGC
CATAATTGGCGGCGGTTTAGCAGGCTTGGCCACCGCCTATCATCTACTCA
ATTCAACCGCTCGCTATGCACGAAAAAGAGGTTTGGCACATACCGACCTA
CGTCTCACCATTTTTGACCCCTGCGATCCCGCTGAGGGAGGTGCTAGCGC
AGTTGCTGCCGGTTTGTTGCATCCTTTTGCTCCTAAGGTTAAGAAAAAGG
TGTGGCAATCCGTGAAAGCTATTAATGCAACTTTGCATCTTGTCGATCAA
GCTCAGAGCTGCTCTCAAACTCCGCTTATTGCTTTTCCTGGTTTGCTTCG
GCTTGCTTTGCGTGAACGGCAACTTGTTGACTATCGAATCGCTGCAAATC
GTTATCCACAGGAAGTGCAATTTTTGGAGCCGCATGAGGTGGCAAGCCGC
TTTCCGCATGTGAACCATAACGTGCCTGCTGTGTTCTTGAACAAGGCGGC
GGTGGTAAATACTCCTGAATATCTACGAGCATTGTGGCGCCTATGCGAAC
AATCTGGTCGCATCGAATGGCGGAAACAGAGTGTGCAAAACGTGCGACAC
ATTTTGGGTGAGGATACGGTCTCATATGATACAGTTGTCGTTTGCGCTGG
TGCTGCGATCCCAGGCATAGAAGGAGTCGGGCATGTACCAGTTCAGTTAT
GTCGAGGTCAGAATTTGATACTACAATCACGTCAAGATATGTACACACAT
GAGATCCCTGTTATAAGCGCTAAATACATAGTTCCAGACTTGTTCAGCGA
TAAGAAATCCTCACGTCTGGTGGCAGGCGCAACCTTTGAGCATCAACGAG
ACGAAGAGGATCAAGAGCTCTTCATGCAAGAGCTTTGCAAGCAGGATGTT
ACTCGAGCTGTTTCGGAATTGCAGCGACCGCTAGAAGCATTGAGCCCAAA
TGTCTTGGAAAATTGTTCTGTTCTCGGTGCAACATCGGGCACGCGAGCTT
TACCTCCGCGTTCCGCCCTCGGTTCTATCCCTATCGTGTGCAAAATGTCT
GGGACGGATATCAGAACTTCATGTTGGCTCTACACAGGTTTGGGTTCTCG
CGGTTTGTTACATCATGCCTATCTTGCACGTGTTCTCGCCCATGCAATTG
TTGCTGGTAACGAGCGTTTAATACCGCTTGAAACACGCCGCTTGGAACTC
GAGCTACCCGCAATAGACTCATGTCGGGATGTAGCCGTGTGCAATGCATG
A

Coding sequence (CDS) from alignment at tig00000898_pilon:14760..16160+

>Ggra4347.t1 ID=Ggra4347.t1|Name=Ggra4347.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00000898_pilon:14760..16160+ (Gracilaria gracilis GNS1m male)
ATGGCTTATCGGCATTTTCGAACGGCTCTTCACAACACTCTAAGCTCACA
CTTGACTTTCACTGCCTGTCCGCCAATTGCAGCGTTCAATCGCCACACAG
CCACTCTCACGCTGCATCATTTCGCTCGAAAGACAAAGAGCAGACGAACC
CCGCGCTCAAATGTTGCACCTCCCGAAGTTCCTCCTCCCCGTCGGGTGGC
CATAATTGGCGGCGGTTTAGCAGGCTTGGCCACCGCCTATCATCTACTCA
ATTCAACCGCTCGCTATGCACGAAAAAGAGGTTTGGCACATACCGACCTA
CGTCTCACCATTTTTGACCCCTGCGATCCCGCTGAGGGAGGTGCTAGCGC
AGTTGCTGCCGGTTTGTTGCATCCTTTTGCTCCTAAGGTTAAGAAAAAGG
TGTGGCAATCCGTGAAAGCTATTAATGCAACTTTGCATCTTGTCGATCAA
GCTCAGAGCTGCTCTCAAACTCCGCTTATTGCTTTTCCTGGTTTGCTTCG
GCTTGCTTTGCGTGAACGGCAACTTGTTGACTATCGAATCGCTGCAAATC
GTTATCCACAGGAAGTGCAATTTTTGGAGCCGCATGAGGTGGCAAGCCGC
TTTCCGCATGTGAACCATAACGTGCCTGCTGTGTTCTTGAACAAGGCGGC
GGTGGTAAATACTCCTGAATATCTACGAGCATTGTGGCGCCTATGCGAAC
AATCTGGTCGCATCGAATGGCGGAAACAGAGTGTGCAAAACGTGCGACAC
ATTTTGGGTGAGGATACGGTCTCATATGATACAGTTGTCGTTTGCGCTGG
TGCTGCGATCCCAGGCATAGAAGGAGTCGGGCATGTACCAGTTCAGTTAT
GTCGAGGTCAGAATTTGATACTACAATCACGTCAAGATATGTACACACAT
GAGATCCCTGTTATAAGCGCTAAATACATAGTTCCAGACTTGTTCAGCGA
TAAGAAATCCTCACGTCTGGTGGCAGGCGCAACCTTTGAGCATCAACGAG
ACGAAGAGGATCAAGAGCTCTTCATGCAAGAGCTTTGCAAGCAGGATGTT
ACTCGAGCTGTTTCGGAATTGCAGCGACCGCTAGAAGCATTGAGCCCAAA
TGTCTTGGAAAATTGTTCTGTTCTCGGTGCAACATCGGGCACGCGAGCTT
TACCTCCGCGTTCCGCCCTCGGTTCTATCCCTATCGTGTGCAAAATGTCT
GGGACGGATATCAGAACTTCATGTTGGCTCTACACAGGTTTGGGTTCTCG
CGGTTTGTTACATCATGCCTATCTTGCACGTGTTCTCGCCCATGCAATTG
TTGCTGGTAACGAGCGTTTAATACCGCTTGAAACACGCCGCTTGGAACTC
GAGCTACCCGCAATAGACTCATGTCGGGATGTAGCCGTGTGCAATGCATG
A