Ggra4317.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4317.t1
Unique NameGgra4317.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length277
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:569425..570255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD24492
PFAMsCpeT
Max annot lvl2759|Eukaryota
Evalue1.92e-19
EggNOG OGs2CBDP@1|root,2SAUK@2759|Eukaryota
DescriptionCpeT/CpcT family (DUF1001)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4317Ggra4317Gracilaria gracilis GNS1m malegenetig00000022_pilon 569425..570255 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4317.t1.start1Ggra4317.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 569425..569427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4317.t1.CDS1Ggra4317.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 569425..570255 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4317.t1.exon1Ggra4317.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 569425..570255 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4317.t1.stop1Ggra4317.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 570253..570255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4317.t1Ggra4317.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 569425..570255 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4317.t1 ID=Ggra4317.t1|Name=Ggra4317.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=277bp
MHSLAFLSALPLVPAPLSRERRLPSRAAATCSASPPARTTCGASAAATTP
TLQRFLNWFRGDFDNYYQVADDRSSGLSYSRIHEHMHCRLQPLRNAKLAP
PHHSVVFATYYYNGNPDIVYRRRLYTLSEGEHALEMRIYKMAFIHGLHVA
KANSDFNALDMGSVDDAALYEHLDGAQILWRYVEQQHAGCELVANGAHFV
GTMRDGGFTSQDSLRYEDELVLTKEDLWVGERVFNADGVMVGGNRDGIPH
KMRRVRRQDEIKWTLDLELPDFNEPE*
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spliced messenger RNA

>Ggra4317.t1 ID=Ggra4317.t1|Name=Ggra4317.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000022_pilon:569425..570255+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCTCTAGCGTTTCTATCAGCACTACCGTTGGTACCAGCGCCCCT
ATCGCGCGAGCGGCGCCTGCCTTCGCGCGCGGCAGCCACATGCAGCGCGT
CTCCGCCCGCGCGAACCACCTGCGGCGCGTCCGCGGCCGCCACCACCCCG
ACTCTGCAGCGCTTCCTAAACTGGTTCCGCGGCGACTTTGACAACTACTA
CCAGGTAGCGGACGACCGCAGCAGCGGGCTGTCGTACTCGCGCATCCACG
AGCACATGCACTGCCGTCTGCAACCGCTGCGCAACGCGAAGCTGGCGCCG
CCGCACCACTCCGTCGTGTTCGCCACGTACTACTACAACGGCAACCCCGA
CATCGTGTACCGCCGACGGCTGTACACGCTCTCCGAAGGCGAGCATGCGC
TGGAAATGCGCATCTACAAGATGGCCTTCATCCACGGGCTGCATGTCGCC
AAGGCAAACTCCGATTTCAACGCGCTGGATATGGGCTCTGTCGACGATGC
GGCCTTGTATGAGCATCTTGACGGCGCGCAGATTCTGTGGCGCTACGTTG
AGCAGCAGCACGCCGGTTGCGAGTTGGTCGCCAATGGAGCGCACTTTGTT
GGTACGATGCGCGATGGCGGCTTTACGTCGCAGGATTCTTTGCGGTATGA
GGATGAACTTGTGCTGACCAAGGAGGACCTGTGGGTTGGCGAGCGCGTGT
TTAACGCGGATGGCGTCATGGTTGGAGGCAATCGCGATGGCATTCCGCAT
AAGATGCGAAGGGTCCGCCGCCAGGATGAGATCAAGTGGACGTTGGATCT
TGAGCTTCCGGATTTCAACGAGCCGGAGTGA
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protein sequence of Ggra4317.t1

>Ggra4317.t1 ID=Ggra4317.t1|Name=Ggra4317.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=277bp
MHSLAFLSALPLVPAPLSRERRLPSRAAATCSASPPARTTCGASAAATTP
TLQRFLNWFRGDFDNYYQVADDRSSGLSYSRIHEHMHCRLQPLRNAKLAP
PHHSVVFATYYYNGNPDIVYRRRLYTLSEGEHALEMRIYKMAFIHGLHVA
KANSDFNALDMGSVDDAALYEHLDGAQILWRYVEQQHAGCELVANGAHFV
GTMRDGGFTSQDSLRYEDELVLTKEDLWVGERVFNADGVMVGGNRDGIPH
KMRRVRRQDEIKWTLDLELPDFNEPE*
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mRNA from alignment at tig00000022_pilon:569425..570255+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4317.t1 ID=Ggra4317.t1|Name=Ggra4317.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000022_pilon:569425..570255+ (Gracilaria gracilis GNS1m male)
ATGCACTCTCTAGCGTTTCTATCAGCACTACCGTTGGTACCAGCGCCCCT
ATCGCGCGAGCGGCGCCTGCCTTCGCGCGCGGCAGCCACATGCAGCGCGT
CTCCGCCCGCGCGAACCACCTGCGGCGCGTCCGCGGCCGCCACCACCCCG
ACTCTGCAGCGCTTCCTAAACTGGTTCCGCGGCGACTTTGACAACTACTA
CCAGGTAGCGGACGACCGCAGCAGCGGGCTGTCGTACTCGCGCATCCACG
AGCACATGCACTGCCGTCTGCAACCGCTGCGCAACGCGAAGCTGGCGCCG
CCGCACCACTCCGTCGTGTTCGCCACGTACTACTACAACGGCAACCCCGA
CATCGTGTACCGCCGACGGCTGTACACGCTCTCCGAAGGCGAGCATGCGC
TGGAAATGCGCATCTACAAGATGGCCTTCATCCACGGGCTGCATGTCGCC
AAGGCAAACTCCGATTTCAACGCGCTGGATATGGGCTCTGTCGACGATGC
GGCCTTGTATGAGCATCTTGACGGCGCGCAGATTCTGTGGCGCTACGTTG
AGCAGCAGCACGCCGGTTGCGAGTTGGTCGCCAATGGAGCGCACTTTGTT
GGTACGATGCGCGATGGCGGCTTTACGTCGCAGGATTCTTTGCGGTATGA
GGATGAACTTGTGCTGACCAAGGAGGACCTGTGGGTTGGCGAGCGCGTGT
TTAACGCGGATGGCGTCATGGTTGGAGGCAATCGCGATGGCATTCCGCAT
AAGATGCGAAGGGTCCGCCGCCAGGATGAGATCAAGTGGACGTTGGATCT
TGAGCTTCCGGATTTCAACGAGCCGGAGTGA
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Coding sequence (CDS) from alignment at tig00000022_pilon:569425..570255+

>Ggra4317.t1 ID=Ggra4317.t1|Name=Ggra4317.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=831bp|location=Sequence derived from alignment at tig00000022_pilon:569425..570255+ (Gracilaria gracilis GNS1m male)
ATGCACTCTCTAGCGTTTCTATCAGCACTACCGTTGGTACCAGCGCCCCT
ATCGCGCGAGCGGCGCCTGCCTTCGCGCGCGGCAGCCACATGCAGCGCGT
CTCCGCCCGCGCGAACCACCTGCGGCGCGTCCGCGGCCGCCACCACCCCG
ACTCTGCAGCGCTTCCTAAACTGGTTCCGCGGCGACTTTGACAACTACTA
CCAGGTAGCGGACGACCGCAGCAGCGGGCTGTCGTACTCGCGCATCCACG
AGCACATGCACTGCCGTCTGCAACCGCTGCGCAACGCGAAGCTGGCGCCG
CCGCACCACTCCGTCGTGTTCGCCACGTACTACTACAACGGCAACCCCGA
CATCGTGTACCGCCGACGGCTGTACACGCTCTCCGAAGGCGAGCATGCGC
TGGAAATGCGCATCTACAAGATGGCCTTCATCCACGGGCTGCATGTCGCC
AAGGCAAACTCCGATTTCAACGCGCTGGATATGGGCTCTGTCGACGATGC
GGCCTTGTATGAGCATCTTGACGGCGCGCAGATTCTGTGGCGCTACGTTG
AGCAGCAGCACGCCGGTTGCGAGTTGGTCGCCAATGGAGCGCACTTTGTT
GGTACGATGCGCGATGGCGGCTTTACGTCGCAGGATTCTTTGCGGTATGA
GGATGAACTTGTGCTGACCAAGGAGGACCTGTGGGTTGGCGAGCGCGTGT
TTAACGCGGATGGCGTCATGGTTGGAGGCAATCGCGATGGCATTCCGCAT
AAGATGCGAAGGGTCCGCCGCCAGGATGAGATCAAGTGGACGTTGGATCT
TGAGCTTCCGGATTTCAACGAGCCGGAGTGA
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