Ggra4316.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4316.t1
Unique Name	Ggra4316.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	641

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000022_pilon	contig	tig00000022_pilon:550476..552398 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4316	Ggra4316	Gracilaria gracilis GNS1m male	gene	tig00000022_pilon 550476..552398 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4316.t1.stop1	Ggra4316.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000022_pilon 550476..550478 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4316.t1.CDS1	Ggra4316.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000022_pilon 550476..552398 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4316.t1.exon1	Ggra4316.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000022_pilon 550476..552398 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4316.t1.start1	Ggra4316.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000022_pilon 552396..552398 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4316.t1	Ggra4316.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000022_pilon 550476..552398 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000022_pilon:550476..552398-
coding sequence from alignment at tig00000022_pilon:550476..552398-

mRNA sequence

>Ggra4316.t1 ID=Ggra4316.t1|Name=Ggra4316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=641bp
MELKLSHSEMSVDVRLQKEAKLQEARSCLEEHVGWDAKTRAHLKQLVHHF
KNEHNSRFVFGGHNHGVTCPCWNSLPRAALVTHQDDKSKVDIPYFVQDVQ
ADITRYRYDVTGHVSAVTGNATVFSHDQGTGSKTAGTVFESVRLDHLLTC
CGERIKVVWSDCASVGRSFFSCVAATQFLVNSGFCDIVLFGFHANRHGKY
LCDSLFGQWSRRARNENMMSIEDMLRVFQSVKRSNGAKVKGYVLNPISSI
DWSKNLDRLGYATSRPADIGWKAMNPYYACACRQEAKQSLSEELQSIIGP
LLPAFESTVRITSWPRFRDRLSEIPFNQLPIDIPSAKLRTTERNGCMNIC
MDGGILSISFSHPFAASGDGVVSLRTANVVGHNAFRIRNKIPLLQGIASI
ASRLWPPGYSETWEGGEDVIIALENWVARTVSIKASGHIQNAALPARYPP
LNFVNAISKLLPRTMMPHYKFKDTYEESPFSLVRGTCAFNAVMKRSMQLK
GELRTSVSVLDVYKAVREEMGVFQGSGVDHHFQPFATLAEEAALEKYRAY
LKESKARMRRSPCGPRNAYQIFRQNPLQVEEMRKKLAVERRNCDRSATLA
SVSSKYWKDSEPDFKKSFEDLVHLEPQIFDREREKFLKWQ*

spliced messenger RNA

>Ggra4316.t1 ID=Ggra4316.t1|Name=Ggra4316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1923bp|location=Sequence derived from alignment at tig00000022_pilon:550476..552398- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTAAAACTTTCACATTCTGAGATGAGCGTGGACGTACGTCTACA
AAAAGAAGCTAAACTGCAAGAGGCTCGCAGTTGTTTGGAGGAGCACGTGG
GTTGGGATGCGAAAACCCGTGCACACTTAAAACAGTTGGTGCATCATTTC
AAGAACGAGCACAACTCTCGGTTCGTCTTCGGAGGGCACAACCATGGAGT
CACATGCCCATGCTGGAACTCATTACCAAGAGCCGCCCTCGTTACGCATC
AAGATGACAAATCAAAGGTGGATATTCCATATTTCGTGCAGGATGTCCAA
GCGGACATCACCAGGTACCGATATGATGTAACGGGACACGTTTCTGCAGT
GACTGGGAATGCGACAGTATTCTCACACGATCAAGGAACAGGAAGTAAAA
CAGCAGGTACGGTTTTTGAAAGCGTTCGTCTGGATCATTTGCTAACATGC
TGTGGAGAGCGCATTAAAGTGGTTTGGTCTGATTGCGCTTCTGTCGGTCG
CAGTTTCTTTTCATGTGTGGCAGCCACGCAGTTTCTCGTGAATTCGGGAT
TCTGCGACATTGTCTTGTTCGGATTCCACGCTAACAGGCATGGTAAGTAC
CTCTGCGACTCATTGTTTGGTCAATGGAGTCGACGTGCTAGAAACGAGAA
CATGATGTCCATCGAAGACATGCTTCGGGTATTTCAAAGCGTCAAGAGGT
CAAATGGTGCTAAGGTGAAAGGCTACGTTCTTAATCCAATATCATCTATA
GACTGGAGTAAAAACCTTGACCGGTTGGGATATGCCACTTCTAGGCCCGC
CGATATCGGATGGAAGGCCATGAATCCGTACTACGCATGTGCTTGCCGTC
AGGAAGCAAAACAATCTCTTTCAGAAGAGCTTCAGAGCATAATTGGGCCT
CTACTACCGGCGTTTGAGAGCACTGTCCGTATTACTTCGTGGCCTCGGTT
TCGGGACAGGCTATCAGAAATTCCATTCAATCAGCTGCCAATCGATATTC
CCTCGGCAAAACTCAGAACGACTGAGAGAAACGGATGTATGAATATATGT
ATGGACGGAGGCATTCTCTCAATTTCCTTCTCTCACCCCTTTGCCGCTAG
CGGCGACGGCGTTGTGTCTTTGCGAACTGCAAATGTGGTAGGTCATAATG
CGTTCAGGATCCGAAATAAGATTCCTCTCTTACAGGGAATTGCCTCTATC
GCAAGCCGACTGTGGCCCCCAGGATACTCTGAAACATGGGAGGGAGGCGA
AGACGTCATAATTGCACTAGAGAATTGGGTTGCTCGCACTGTGTCAATAA
AGGCGTCGGGCCACATACAAAACGCAGCGCTGCCTGCCAGGTATCCTCCC
CTCAACTTTGTGAACGCTATTTCCAAACTTCTGCCACGTACAATGATGCC
ACATTACAAGTTCAAGGATACGTATGAAGAATCACCCTTTTCCCTTGTGA
GAGGGACGTGTGCATTCAACGCTGTGATGAAGCGTTCAATGCAACTCAAA
GGAGAGCTGAGGACTTCTGTGTCTGTTCTGGATGTCTACAAGGCTGTGAG
AGAAGAGATGGGGGTGTTTCAAGGCAGTGGTGTAGATCATCACTTTCAGC
CATTCGCAACACTGGCAGAAGAAGCTGCTCTTGAGAAATACAGGGCGTAT
TTGAAAGAGAGCAAAGCGCGTATGAGAAGAAGCCCATGTGGTCCAAGAAA
TGCCTATCAGATTTTTCGCCAGAATCCCCTGCAGGTGGAAGAAATGAGAA
AGAAACTTGCCGTGGAGAGAAGAAATTGCGACAGGTCCGCAACATTAGCC
TCTGTATCATCAAAATACTGGAAAGACTCTGAACCGGATTTCAAGAAATC
GTTTGAGGACTTGGTCCATTTGGAACCCCAAATATTCGACAGGGAGCGTG
AGAAGTTTCTAAAGTGGCAATAA

protein sequence of Ggra4316.t1

>Ggra4316.t1 ID=Ggra4316.t1|Name=Ggra4316.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=641bp
MELKLSHSEMSVDVRLQKEAKLQEARSCLEEHVGWDAKTRAHLKQLVHHF
KNEHNSRFVFGGHNHGVTCPCWNSLPRAALVTHQDDKSKVDIPYFVQDVQ
ADITRYRYDVTGHVSAVTGNATVFSHDQGTGSKTAGTVFESVRLDHLLTC
CGERIKVVWSDCASVGRSFFSCVAATQFLVNSGFCDIVLFGFHANRHGKY
LCDSLFGQWSRRARNENMMSIEDMLRVFQSVKRSNGAKVKGYVLNPISSI
DWSKNLDRLGYATSRPADIGWKAMNPYYACACRQEAKQSLSEELQSIIGP
LLPAFESTVRITSWPRFRDRLSEIPFNQLPIDIPSAKLRTTERNGCMNIC
MDGGILSISFSHPFAASGDGVVSLRTANVVGHNAFRIRNKIPLLQGIASI
ASRLWPPGYSETWEGGEDVIIALENWVARTVSIKASGHIQNAALPARYPP
LNFVNAISKLLPRTMMPHYKFKDTYEESPFSLVRGTCAFNAVMKRSMQLK
GELRTSVSVLDVYKAVREEMGVFQGSGVDHHFQPFATLAEEAALEKYRAY
LKESKARMRRSPCGPRNAYQIFRQNPLQVEEMRKKLAVERRNCDRSATLA
SVSSKYWKDSEPDFKKSFEDLVHLEPQIFDREREKFLKWQ*

mRNA from alignment at tig00000022_pilon:550476..552398-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4316.t1 ID=Ggra4316.t1|Name=Ggra4316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1923bp|location=Sequence derived from alignment at tig00000022_pilon:550476..552398- (Gracilaria gracilis GNS1m male)
ATGGAACTAAAACTTTCACATTCTGAGATGAGCGTGGACGTACGTCTACA
AAAAGAAGCTAAACTGCAAGAGGCTCGCAGTTGTTTGGAGGAGCACGTGG
GTTGGGATGCGAAAACCCGTGCACACTTAAAACAGTTGGTGCATCATTTC
AAGAACGAGCACAACTCTCGGTTCGTCTTCGGAGGGCACAACCATGGAGT
CACATGCCCATGCTGGAACTCATTACCAAGAGCCGCCCTCGTTACGCATC
AAGATGACAAATCAAAGGTGGATATTCCATATTTCGTGCAGGATGTCCAA
GCGGACATCACCAGGTACCGATATGATGTAACGGGACACGTTTCTGCAGT
GACTGGGAATGCGACAGTATTCTCACACGATCAAGGAACAGGAAGTAAAA
CAGCAGGTACGGTTTTTGAAAGCGTTCGTCTGGATCATTTGCTAACATGC
TGTGGAGAGCGCATTAAAGTGGTTTGGTCTGATTGCGCTTCTGTCGGTCG
CAGTTTCTTTTCATGTGTGGCAGCCACGCAGTTTCTCGTGAATTCGGGAT
TCTGCGACATTGTCTTGTTCGGATTCCACGCTAACAGGCATGGTAAGTAC
CTCTGCGACTCATTGTTTGGTCAATGGAGTCGACGTGCTAGAAACGAGAA
CATGATGTCCATCGAAGACATGCTTCGGGTATTTCAAAGCGTCAAGAGGT
CAAATGGTGCTAAGGTGAAAGGCTACGTTCTTAATCCAATATCATCTATA
GACTGGAGTAAAAACCTTGACCGGTTGGGATATGCCACTTCTAGGCCCGC
CGATATCGGATGGAAGGCCATGAATCCGTACTACGCATGTGCTTGCCGTC
AGGAAGCAAAACAATCTCTTTCAGAAGAGCTTCAGAGCATAATTGGGCCT
CTACTACCGGCGTTTGAGAGCACTGTCCGTATTACTTCGTGGCCTCGGTT
TCGGGACAGGCTATCAGAAATTCCATTCAATCAGCTGCCAATCGATATTC
CCTCGGCAAAACTCAGAACGACTGAGAGAAACGGATGTATGAATATATGT
ATGGACGGAGGCATTCTCTCAATTTCCTTCTCTCACCCCTTTGCCGCTAG
CGGCGACGGCGTTGTGTCTTTGCGAACTGCAAATGTGGTAGGTCATAATG
CGTTCAGGATCCGAAATAAGATTCCTCTCTTACAGGGAATTGCCTCTATC
GCAAGCCGACTGTGGCCCCCAGGATACTCTGAAACATGGGAGGGAGGCGA
AGACGTCATAATTGCACTAGAGAATTGGGTTGCTCGCACTGTGTCAATAA
AGGCGTCGGGCCACATACAAAACGCAGCGCTGCCTGCCAGGTATCCTCCC
CTCAACTTTGTGAACGCTATTTCCAAACTTCTGCCACGTACAATGATGCC
ACATTACAAGTTCAAGGATACGTATGAAGAATCACCCTTTTCCCTTGTGA
GAGGGACGTGTGCATTCAACGCTGTGATGAAGCGTTCAATGCAACTCAAA
GGAGAGCTGAGGACTTCTGTGTCTGTTCTGGATGTCTACAAGGCTGTGAG
AGAAGAGATGGGGGTGTTTCAAGGCAGTGGTGTAGATCATCACTTTCAGC
CATTCGCAACACTGGCAGAAGAAGCTGCTCTTGAGAAATACAGGGCGTAT
TTGAAAGAGAGCAAAGCGCGTATGAGAAGAAGCCCATGTGGTCCAAGAAA
TGCCTATCAGATTTTTCGCCAGAATCCCCTGCAGGTGGAAGAAATGAGAA
AGAAACTTGCCGTGGAGAGAAGAAATTGCGACAGGTCCGCAACATTAGCC
TCTGTATCATCAAAATACTGGAAAGACTCTGAACCGGATTTCAAGAAATC
GTTTGAGGACTTGGTCCATTTGGAACCCCAAATATTCGACAGGGAGCGTG
AGAAGTTTCTAAAGTGGCAATAA

Coding sequence (CDS) from alignment at tig00000022_pilon:550476..552398-

>Ggra4316.t1 ID=Ggra4316.t1|Name=Ggra4316.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1923bp|location=Sequence derived from alignment at tig00000022_pilon:550476..552398- (Gracilaria gracilis GNS1m male)
ATGGAACTAAAACTTTCACATTCTGAGATGAGCGTGGACGTACGTCTACA
AAAAGAAGCTAAACTGCAAGAGGCTCGCAGTTGTTTGGAGGAGCACGTGG
GTTGGGATGCGAAAACCCGTGCACACTTAAAACAGTTGGTGCATCATTTC
AAGAACGAGCACAACTCTCGGTTCGTCTTCGGAGGGCACAACCATGGAGT
CACATGCCCATGCTGGAACTCATTACCAAGAGCCGCCCTCGTTACGCATC
AAGATGACAAATCAAAGGTGGATATTCCATATTTCGTGCAGGATGTCCAA
GCGGACATCACCAGGTACCGATATGATGTAACGGGACACGTTTCTGCAGT
GACTGGGAATGCGACAGTATTCTCACACGATCAAGGAACAGGAAGTAAAA
CAGCAGGTACGGTTTTTGAAAGCGTTCGTCTGGATCATTTGCTAACATGC
TGTGGAGAGCGCATTAAAGTGGTTTGGTCTGATTGCGCTTCTGTCGGTCG
CAGTTTCTTTTCATGTGTGGCAGCCACGCAGTTTCTCGTGAATTCGGGAT
TCTGCGACATTGTCTTGTTCGGATTCCACGCTAACAGGCATGGTAAGTAC
CTCTGCGACTCATTGTTTGGTCAATGGAGTCGACGTGCTAGAAACGAGAA
CATGATGTCCATCGAAGACATGCTTCGGGTATTTCAAAGCGTCAAGAGGT
CAAATGGTGCTAAGGTGAAAGGCTACGTTCTTAATCCAATATCATCTATA
GACTGGAGTAAAAACCTTGACCGGTTGGGATATGCCACTTCTAGGCCCGC
CGATATCGGATGGAAGGCCATGAATCCGTACTACGCATGTGCTTGCCGTC
AGGAAGCAAAACAATCTCTTTCAGAAGAGCTTCAGAGCATAATTGGGCCT
CTACTACCGGCGTTTGAGAGCACTGTCCGTATTACTTCGTGGCCTCGGTT
TCGGGACAGGCTATCAGAAATTCCATTCAATCAGCTGCCAATCGATATTC
CCTCGGCAAAACTCAGAACGACTGAGAGAAACGGATGTATGAATATATGT
ATGGACGGAGGCATTCTCTCAATTTCCTTCTCTCACCCCTTTGCCGCTAG
CGGCGACGGCGTTGTGTCTTTGCGAACTGCAAATGTGGTAGGTCATAATG
CGTTCAGGATCCGAAATAAGATTCCTCTCTTACAGGGAATTGCCTCTATC
GCAAGCCGACTGTGGCCCCCAGGATACTCTGAAACATGGGAGGGAGGCGA
AGACGTCATAATTGCACTAGAGAATTGGGTTGCTCGCACTGTGTCAATAA
AGGCGTCGGGCCACATACAAAACGCAGCGCTGCCTGCCAGGTATCCTCCC
CTCAACTTTGTGAACGCTATTTCCAAACTTCTGCCACGTACAATGATGCC
ACATTACAAGTTCAAGGATACGTATGAAGAATCACCCTTTTCCCTTGTGA
GAGGGACGTGTGCATTCAACGCTGTGATGAAGCGTTCAATGCAACTCAAA
GGAGAGCTGAGGACTTCTGTGTCTGTTCTGGATGTCTACAAGGCTGTGAG
AGAAGAGATGGGGGTGTTTCAAGGCAGTGGTGTAGATCATCACTTTCAGC
CATTCGCAACACTGGCAGAAGAAGCTGCTCTTGAGAAATACAGGGCGTAT
TTGAAAGAGAGCAAAGCGCGTATGAGAAGAAGCCCATGTGGTCCAAGAAA
TGCCTATCAGATTTTTCGCCAGAATCCCCTGCAGGTGGAAGAAATGAGAA
AGAAACTTGCCGTGGAGAGAAGAAATTGCGACAGGTCCGCAACATTAGCC
TCTGTATCATCAAAATACTGGAAAGACTCTGAACCGGATTTCAAGAAATC
GTTTGAGGACTTGGTCCATTTGGAACCCCAAATATTCGACAGGGAGCGTG
AGAAGTTTCTAAAGTGGCAATAA