Ggra4314.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4314.t1
Unique NameGgra4314.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length485
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:533996..535524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog985255.APHJ01000054_gene1972
PFAMsCotH
Max annot lvl976|Bacteroidetes
Evalue1.25e-09
EggNOG OGsCOG5337@1|root,COG5337@2|Bacteria,4NI4U@976|Bacteroidetes,1HXYN@117743|Flavobacteriia
DescriptionCOG5337 Spore coat assembly protein
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4314Ggra4314Gracilaria gracilis GNS1m malegenetig00000022_pilon 533996..535524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4314.t1Ggra4314.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 533996..535524 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4314.t1.stop1Ggra4314.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 533996..533998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4314.t1.CDS1Ggra4314.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 533996..534887 -
Ggra4314.t1.CDS2Ggra4314.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000022_pilon 534962..535524 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4314.t1.exon1Ggra4314.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 533996..534887 -
Ggra4314.t1.exon2Ggra4314.t1.exon2Gracilaria gracilis GNS1m maleexontig00000022_pilon 534962..535524 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4314.t1.intron1Ggra4314.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000022_pilon 534888..534961 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4314.t1.start1Ggra4314.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 535522..535524 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4314.t1 ID=Ggra4314.t1|Name=Ggra4314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=485bp
MVTSTDPTSADDPIFYQKPDQPDMSGAAIFEASSRNVFNRDHHKIHIRVH
QLVFDKVLSDGAADIDSGYGLVDEFSFDGTKIANVGIKVRGNTSAGNVKR
QFKFKFDAEEVFAWREGGMQQLTFPENDDRRFFGEQGFSVRASQNDPSRI
RETLAGKVFREATLGDEDPQRPWRTRGALVYRTAFATLEAIRPQGTVCGD
GDIDKTFLKTRFERFDNEKVKGYLFQADKGMASFKKEDYSRTGWKCELVK
GKKAKDEDDFLKADEKMLDLIDFLDQTPPEDQIRDRFDMDSVNGYLAGAL
LATHWDSLAANRNNDFMFYLKRDVLDKDMKPVLDAQGEACEEKKWYLITW
DLDNTLWDRPGGSEVQDPYKSWFSNYLYDPARKEKCKTQLFENIYDRKEN
EKIRSVYRGVLRDMLGGFYSKSKYESEVDSLMKRTGAAIEDTRREVATAG
WQKEWGERNNPQDFEDIKKHASVRRSKVGGQLES*
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spliced messenger RNA

>Ggra4314.t1 ID=Ggra4314.t1|Name=Ggra4314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000022_pilon:533996..535524- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACCTCTACCGACCCCACGTCCGCCGACGACCCCATCTTCTACCA
GAAGCCCGACCAGCCCGACATGTCGGGCGCGGCCATCTTCGAAGCCTCGT
CGCGCAACGTCTTCAACCGCGACCACCACAAGATCCACATCCGCGTCCAC
CAGCTGGTGTTCGACAAGGTGCTGTCGGACGGCGCGGCCGACATCGACTC
CGGCTACGGGCTCGTGGACGAGTTTAGCTTCGACGGCACCAAGATCGCCA
ACGTCGGCATCAAGGTGCGCGGGAACACGTCGGCCGGCAACGTCAAGCGT
CAGTTCAAGTTCAAGTTCGACGCCGAGGAAGTGTTTGCGTGGCGCGAAGG
TGGAATGCAACAGCTCACCTTCCCCGAAAACGACGACCGCCGCTTCTTCG
GCGAGCAGGGCTTCTCGGTGCGCGCCAGCCAGAATGATCCGTCGCGCATC
CGCGAGACGCTTGCCGGAAAGGTGTTCCGCGAGGCCACGTTGGGCGACGA
AGATCCGCAGCGACCGTGGCGCACTCGCGGCGCGCTGGTGTACCGTACGG
CGTTCGCCACACTGGAAGCTATACGACCCCAAGGGACTGTATGTGGTGAC
GGAGACATCGATAAGACGTTCCTGAAGACGCGCTTCGAGCGCTTCGACAA
CGAGAAGGTGAAGGGCTATCTGTTCCAGGCCGACAAGGGGATGGCGTCCT
TCAAGAAGGAAGACTACTCACGGACGGGGTGGAAGTGTGAGCTGGTGAAG
GGAAAGAAGGCAAAGGACGAGGACGACTTTCTGAAGGCGGACGAGAAGAT
GCTCGACCTGATCGACTTTCTGGACCAGACGCCGCCCGAGGACCAGATCC
GCGACCGATTCGACATGGACAGCGTCAACGGCTACCTGGCCGGGGCGCTG
CTAGCCACACATTGGGACAGTCTGGCGGCGAACCGCAACAACGACTTTAT
GTTCTACCTCAAGCGCGACGTGCTGGACAAGGACATGAAGCCGGTGCTTG
ACGCGCAAGGCGAGGCATGCGAGGAGAAGAAGTGGTACCTGATCACGTGG
GATCTGGACAACACGCTGTGGGATCGTCCCGGCGGATCGGAGGTACAGGA
CCCGTACAAGTCGTGGTTCTCCAACTATCTGTACGACCCGGCGCGCAAGG
AGAAATGTAAGACGCAGCTGTTCGAGAACATCTACGACAGAAAGGAGAAC
GAGAAGATCCGCAGCGTGTACCGCGGCGTGCTGCGCGACATGCTGGGCGG
CTTCTACAGCAAGAGCAAGTACGAGAGCGAGGTGGACAGCCTGATGAAAC
GAACCGGCGCCGCGATCGAGGACACGCGCCGCGAGGTGGCCACCGCCGGC
TGGCAGAAAGAGTGGGGCGAGCGTAACAACCCGCAGGACTTTGAGGACAT
CAAGAAGCACGCGAGCGTGCGCAGGAGCAAGGTGGGCGGCCAGCTGGAGT
CGTAG
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protein sequence of Ggra4314.t1

>Ggra4314.t1 ID=Ggra4314.t1|Name=Ggra4314.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=485bp
MVTSTDPTSADDPIFYQKPDQPDMSGAAIFEASSRNVFNRDHHKIHIRVH
QLVFDKVLSDGAADIDSGYGLVDEFSFDGTKIANVGIKVRGNTSAGNVKR
QFKFKFDAEEVFAWREGGMQQLTFPENDDRRFFGEQGFSVRASQNDPSRI
RETLAGKVFREATLGDEDPQRPWRTRGALVYRTAFATLEAIRPQGTVCGD
GDIDKTFLKTRFERFDNEKVKGYLFQADKGMASFKKEDYSRTGWKCELVK
GKKAKDEDDFLKADEKMLDLIDFLDQTPPEDQIRDRFDMDSVNGYLAGAL
LATHWDSLAANRNNDFMFYLKRDVLDKDMKPVLDAQGEACEEKKWYLITW
DLDNTLWDRPGGSEVQDPYKSWFSNYLYDPARKEKCKTQLFENIYDRKEN
EKIRSVYRGVLRDMLGGFYSKSKYESEVDSLMKRTGAAIEDTRREVATAG
WQKEWGERNNPQDFEDIKKHASVRRSKVGGQLES*
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mRNA from alignment at tig00000022_pilon:533996..535524-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4314.t1 ID=Ggra4314.t1|Name=Ggra4314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1529bp|location=Sequence derived from alignment at tig00000022_pilon:533996..535524- (Gracilaria gracilis GNS1m male)
ATGGTTACCTCTACCGACCCCACGTCCGCCGACGACCCCATCTTCTACCA
GAAGCCCGACCAGCCCGACATGTCGGGCGCGGCCATCTTCGAAGCCTCGT
CGCGCAACGTCTTCAACCGCGACCACCACAAGATCCACATCCGCGTCCAC
CAGCTGGTGTTCGACAAGGTGCTGTCGGACGGCGCGGCCGACATCGACTC
CGGCTACGGGCTCGTGGACGAGTTTAGCTTCGACGGCACCAAGATCGCCA
ACGTCGGCATCAAGGTGCGCGGGAACACGTCGGCCGGCAACGTCAAGCGT
CAGTTCAAGTTCAAGTTCGACGCCGAGGAAGTGTTTGCGTGGCGCGAAGG
TGGAATGCAACAGCTCACCTTCCCCGAAAACGACGACCGCCGCTTCTTCG
GCGAGCAGGGCTTCTCGGTGCGCGCCAGCCAGAATGATCCGTCGCGCATC
CGCGAGACGCTTGCCGGAAAGGTGTTCCGCGAGGCCACGTTGGGCGACGA
AGATCCGCAGCGACCGTGGCGCACTCGCGGCGCGCTGGTGTACCGTACGG
CGTTCGCCACACTGTATGTGACCAATGGACGTACCGTGGAGGAGGGCTAT
GACGGCGGGCACCCCGAGTACCGCGTGCCGTTTGAAGGGAAGCTATACGA
CCCCAAGGGACTGTATGTGGTGACGGAGACATCGATAAGACGTTCCTGAA
GACGCGCTTCGAGCGCTTCGACAACGAGAAGGTGAAGGGCTATCTGTTCC
AGGCCGACAAGGGGATGGCGTCCTTCAAGAAGGAAGACTACTCACGGACG
GGGTGGAAGTGTGAGCTGGTGAAGGGAAAGAAGGCAAAGGACGAGGACGA
CTTTCTGAAGGCGGACGAGAAGATGCTCGACCTGATCGACTTTCTGGACC
AGACGCCGCCCGAGGACCAGATCCGCGACCGATTCGACATGGACAGCGTC
AACGGCTACCTGGCCGGGGCGCTGCTAGCCACACATTGGGACAGTCTGGC
GGCGAACCGCAACAACGACTTTATGTTCTACCTCAAGCGCGACGTGCTGG
ACAAGGACATGAAGCCGGTGCTTGACGCGCAAGGCGAGGCATGCGAGGAG
AAGAAGTGGTACCTGATCACGTGGGATCTGGACAACACGCTGTGGGATCG
TCCCGGCGGATCGGAGGTACAGGACCCGTACAAGTCGTGGTTCTCCAACT
ATCTGTACGACCCGGCGCGCAAGGAGAAATGTAAGACGCAGCTGTTCGAG
AACATCTACGACAGAAAGGAGAACGAGAAGATCCGCAGCGTGTACCGCGG
CGTGCTGCGCGACATGCTGGGCGGCTTCTACAGCAAGAGCAAGTACGAGA
GCGAGGTGGACAGCCTGATGAAACGAACCGGCGCCGCGATCGAGGACACG
CGCCGCGAGGTGGCCACCGCCGGCTGGCAGAAAGAGTGGGGCGAGCGTAA
CAACCCGCAGGACTTTGAGGACATCAAGAAGCACGCGAGCGTGCGCAGGA
GCAAGGTGGGCGGCCAGCTGGAGTCGTAG
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Coding sequence (CDS) from alignment at tig00000022_pilon:533996..535524-

>Ggra4314.t1 ID=Ggra4314.t1|Name=Ggra4314.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1455bp|location=Sequence derived from alignment at tig00000022_pilon:533996..535524- (Gracilaria gracilis GNS1m male)
ATGGTTACCTCTACCGACCCCACGTCCGCCGACGACCCCATCTTCTACCA
GAAGCCCGACCAGCCCGACATGTCGGGCGCGGCCATCTTCGAAGCCTCGT
CGCGCAACGTCTTCAACCGCGACCACCACAAGATCCACATCCGCGTCCAC
CAGCTGGTGTTCGACAAGGTGCTGTCGGACGGCGCGGCCGACATCGACTC
CGGCTACGGGCTCGTGGACGAGTTTAGCTTCGACGGCACCAAGATCGCCA
ACGTCGGCATCAAGGTGCGCGGGAACACGTCGGCCGGCAACGTCAAGCGT
CAGTTCAAGTTCAAGTTCGACGCCGAGGAAGTGTTTGCGTGGCGCGAAGG
TGGAATGCAACAGCTCACCTTCCCCGAAAACGACGACCGCCGCTTCTTCG
GCGAGCAGGGCTTCTCGGTGCGCGCCAGCCAGAATGATCCGTCGCGCATC
CGCGAGACGCTTGCCGGAAAGGTGTTCCGCGAGGCCACGTTGGGCGACGA
AGATCCGCAGCGACCGTGGCGCACTCGCGGCGCGCTGGTGTACCGTACGG
CGTTCGCCACACTGGAAGCTATACGACCCCAAGGGACTGTATGTGGTGAC
GGAGACATCGATAAGACGTTCCTGAAGACGCGCTTCGAGCGCTTCGACAA
CGAGAAGGTGAAGGGCTATCTGTTCCAGGCCGACAAGGGGATGGCGTCCT
TCAAGAAGGAAGACTACTCACGGACGGGGTGGAAGTGTGAGCTGGTGAAG
GGAAAGAAGGCAAAGGACGAGGACGACTTTCTGAAGGCGGACGAGAAGAT
GCTCGACCTGATCGACTTTCTGGACCAGACGCCGCCCGAGGACCAGATCC
GCGACCGATTCGACATGGACAGCGTCAACGGCTACCTGGCCGGGGCGCTG
CTAGCCACACATTGGGACAGTCTGGCGGCGAACCGCAACAACGACTTTAT
GTTCTACCTCAAGCGCGACGTGCTGGACAAGGACATGAAGCCGGTGCTTG
ACGCGCAAGGCGAGGCATGCGAGGAGAAGAAGTGGTACCTGATCACGTGG
GATCTGGACAACACGCTGTGGGATCGTCCCGGCGGATCGGAGGTACAGGA
CCCGTACAAGTCGTGGTTCTCCAACTATCTGTACGACCCGGCGCGCAAGG
AGAAATGTAAGACGCAGCTGTTCGAGAACATCTACGACAGAAAGGAGAAC
GAGAAGATCCGCAGCGTGTACCGCGGCGTGCTGCGCGACATGCTGGGCGG
CTTCTACAGCAAGAGCAAGTACGAGAGCGAGGTGGACAGCCTGATGAAAC
GAACCGGCGCCGCGATCGAGGACACGCGCCGCGAGGTGGCCACCGCCGGC
TGGCAGAAAGAGTGGGGCGAGCGTAACAACCCGCAGGACTTTGAGGACAT
CAAGAAGCACGCGAGCGTGCGCAGGAGCAAGGTGGGCGGCCAGCTGGAGT
CGTAG
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